Cla021635 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021635
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Photosystem I reaction center subunit II (AHRD V1 **** B4FAW3_MAIZE); contains Interpro domain(s) IPR003685 Photosystem I protein PsaD
Location	Chr5 : 4819643 .. 4820272 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCAGCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCAGCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCAGCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQAAPVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

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BLAST of Cla021635 vs. Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 2.3e-105
Identity = 194/210 (92.38%), Postives = 196/210 (93.33%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSAEAEAQA 60
           MAMA QATLFTPSLS+PKST I++PWKQS TLSFL SKP LK ASSSRS KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETS- 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
             VEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  --VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Cla021635 vs. Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 5.1e-89
Identity = 173/212 (81.60%), Postives = 180/212 (84.91%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPLKPASS-SRSLKVSAEAEAQA 60
           MAMA QA+LFTP LS PKST  T PWKQS  +SF   K LK   S +R ++  AE EA A
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAE-EAPA 60

Query: 61  APVE--APAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
           A  E  APAGF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG
Sbjct: 61  ATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120

Query: 121 AAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           PGREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 PGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

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BLAST of Cla021635 vs. Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.6e-87
Identity = 167/210 (79.52%), Postives = 178/210 (84.76%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPLKPA-SSSRSLKVSAEAEAQA 60
           MAMA QA+LFTP+LS+PKS+A   PWKQS  L+  + K LK   S+ R ++  AE EA  
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAE-EAAT 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
              EAP GF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  KEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN G
Sbjct: 121 IMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           R+GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 RQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

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BLAST of Cla021635 vs. Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-87
Identity = 169/216 (78.24%), Postives = 180/216 (83.33%), Query Frame = 1


Query: 1   MAMAAQATLFTPS-LSSPK--STAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEA 60
           MAMA QATLF+PS LSS K   T +T  +KQ   ++F +    KPAS   S++ +A AE 
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS----KPASRHHSIRAAAAAEG 60

Query: 61  QAAPV----EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120
           +AA      EAP GF+PPELDP TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM
Sbjct: 61  KAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120

Query: 121 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYP 180
           PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYP
Sbjct: 121 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYP 180

Query: 181 EKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 EKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

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BLAST of Cla021635 vs. Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 5.3e-78
Identity = 144/165 (87.27%), Postives = 146/165 (88.48%), Query Frame = 1


Query: 47  RSLKVSAEAEAQAAPV--EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWE 106
           R+ K  + A A AAP   EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW 
Sbjct: 44  RAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWN 103

Query: 107 SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQY 166
           SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQY
Sbjct: 104 SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQY 163

Query: 167 LHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           LHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 164 LHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

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BLAST of Cla021635 vs. TrEMBL
Match: A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 2.5e-103
Identity = 194/210 (92.38%), Postives = 198/210 (94.29%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSAEAEAQA 60
           MAMA QATLFTPSLS+PKST I++PWKQS TLSFL SKP LK ASSSRS KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETS- 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
             VEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  --VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cla021635 vs. TrEMBL
Match: V7BEA2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G055900g PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.0e-91
Identity = 172/210 (81.90%), Postives = 184/210 (87.62%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPK-STAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQA 60
           MAMA QA+LFTP  S  K S   +VPWKQSPT SF + KPLK    S++++ +A+  A+A
Sbjct: 1   MAMATQASLFTPPFSGLKLSDRASVPWKQSPTFSFTSPKPLK---LSKTIRAAADETAEA 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAP GF+PPELDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  ATKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           R+GVGQNFRSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 RQGVGQNFRSIGKNVSPIEVKFTGKQPYDL 207

[Close]

BLAST of Cla021635 vs. TrEMBL
Match: T2DMR3_PHAVU (Photosystem I reaction center subunit II chloroplastic-like protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.0e-91
Identity = 172/210 (81.90%), Postives = 184/210 (87.62%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPK-STAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQA 60
           MAMA QA+LFTP  S  K S   +VPWKQSPT SF + KPLK    S++++ +A+  A+A
Sbjct: 1   MAMATQASLFTPPFSGLKPSDRASVPWKQSPTFSFTSPKPLK---LSKTIRAAADETAEA 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAP GF+PPELDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  ATKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           R+GVGQNFRSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 RQGVGQNFRSIGKNVSPIEVKFTGKQPYDL 207

[Close]

BLAST of Cla021635 vs. TrEMBL
Match: A0A0S3SMI8_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.08G062100 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 3.2e-90
Identity = 169/210 (80.48%), Postives = 184/210 (87.62%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKST-AITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQA 60
           MAMA QA+LF+PS S+ K T  ++VPWKQSPT SF + KPLK + + R+   +A+  A+A
Sbjct: 1   MAMATQASLFSPSFSALKPTDRVSVPWKQSPTFSFSSPKPLKFSKTIRA--AAADETAEA 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
              EAP GF+PPELDP TPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  VTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           R+GVGQNFRSIGKNV+PIEVKFTGKQ YDL
Sbjct: 181 RQGVGQNFRSIGKNVNPIEVKFTGKQPYDL 208

[Close]

BLAST of Cla021635 vs. TrEMBL
Match: A0A0L9U000_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g227000 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 3.2e-90
Identity = 169/210 (80.48%), Postives = 184/210 (87.62%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKST-AITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQA 60
           MAMA QA+LF+PS S+ K T  ++VPWKQSPT SF + KPLK + + R+   +A+  A+A
Sbjct: 1   MAMATQASLFSPSFSALKPTDRVSVPWKQSPTFSFSSPKPLKFSKTIRA--AAADETAEA 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
              EAP GF+PPELDP TPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  VTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           R+GVGQNFRSIGKNV+PIEVKFTGKQ YDL
Sbjct: 181 RQGVGQNFRSIGKNVNPIEVKFTGKQPYDL 208

[Close]

BLAST of Cla021635 vs. NCBI nr
Match: gi|659076451|ref|XP_008438687.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 387.5 bits (994), Expect = 1.5e-104
Identity = 196/210 (93.33%), Postives = 202/210 (96.19%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSAEAEAQA 60
           MAMA QATLFTPSLS+PKS+AI++PWKQSPTLSFL SKP LK ASSSRSLKVSAEAEA  
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAA- 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
             VEAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  --VEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cla021635 vs. NCBI nr
Match: gi|449432708|ref|XP_004134141.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 3.6e-103
Identity = 194/210 (92.38%), Postives = 198/210 (94.29%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSAEAEAQA 60
           MAMA QATLFTPSLS+PKST I++PWKQS TLSFL SKP LK ASSSRS KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETS- 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
             VEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  --VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cla021635 vs. NCBI nr
Match: gi|645236013|ref|XP_008224535.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Prunus mume])

HSP 1 Score: 349.7 bits (896), Expect = 3.4e-93
Identity = 173/213 (81.22%), Postives = 192/213 (90.14%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKSTA--ITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQ 60
           MAMA QATLFTP+ S+PK++    TVPWKQS + SF+  KPL  +S++R+++++A AE +
Sbjct: 1   MAMATQATLFTPTPSAPKTSVERSTVPWKQSVSSSFMAPKPLMLSSTTRTMRINAAAEEK 60

Query: 61  --AAPVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
             A P EAP GF+PPELDPTTPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPTG
Sbjct: 61  TVAPPKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPTG 120

Query: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           NPGR+GVGQNFRSIGKNV+PIEVKFTGKQVYD+
Sbjct: 181 NPGRQGVGQNFRSIGKNVNPIEVKFTGKQVYDI 213

[Close]

BLAST of Cla021635 vs. NCBI nr
Match: gi|657970185|ref|XP_008376830.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus domestica])

HSP 1 Score: 345.5 bits (885), Expect = 6.4e-92
Identity = 173/213 (81.22%), Postives = 190/213 (89.20%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPKSTA--ITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQ 60
           MAMA QA+LFTP+ S+PK+TA   T PWKQS + SF+  KPLK  S++R+++++A AE +
Sbjct: 1   MAMATQASLFTPTPSAPKTTADRTTTPWKQSVSSSFMAPKPLK-LSTARTMRINASAEEK 60

Query: 61  AAPV--EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
                 EAP GF+PPELDPTTPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPTG
Sbjct: 61  TVTPTKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPTG 120

Query: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           NPGR+GVGQNFRSIGKNVSPIEVKFTGKQVYD+
Sbjct: 181 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDI 212

[Close]

BLAST of Cla021635 vs. NCBI nr
Match: gi|593660802|ref|XP_007143239.1| (hypothetical protein PHAVU_007G055900g [Phaseolus vulgaris])

HSP 1 Score: 344.4 bits (882), Expect = 1.4e-91
Identity = 172/210 (81.90%), Postives = 184/210 (87.62%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSSPK-STAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQA 60
           MAMA QA+LFTP  S  K S   +VPWKQSPT SF + KPLK    S++++ +A+  A+A
Sbjct: 1   MAMATQASLFTPPFSGLKLSDRASVPWKQSPTFSFTSPKPLK---LSKTIRAAADETAEA 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAP GF+PPELDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  ATKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           R+GVGQNFRSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 RQGVGQNFRSIGKNVSPIEVKFTGKQPYDL 207

The following BLAST results are available for this feature:

BLAST of Cla021635 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAD_CUCSA	2.3e-105	92.38	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=ps...	[more]
PSAD_SOLLC	5.1e-89	81.60	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
PSAD_NICSY	1.6e-87	79.52	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
PSAD_SPIOL	2.1e-87	78.24	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAD1_ARATH	5.3e-78	87.27	Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Cla021635 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Y6_CUCSA	2.5e-103	92.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1	[more]
V7BEA2_PHAVU	1.0e-91	81.90	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G055900g PE=4 SV=1	[more]
T2DMR3_PHAVU	1.0e-91	81.90	Photosystem I reaction center subunit II chloroplastic-like protein OS=Phaseolus...	[more]
A0A0S3SMI8_PHAAN	3.2e-90	80.48	Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.08...	[more]
A0A0L9U000_PHAAN	3.2e-90	80.48	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g227000 PE=4 SV=1	[more]

BLAST of Cla021635 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076451\|ref\|XP_008438687.1\|	1.5e-104	93.33	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo...	[more]
gi\|449432708\|ref\|XP_004134141.1\|	3.6e-103	92.38	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati...	[more]
gi\|645236013\|ref\|XP_008224535.1\|	3.4e-93	81.22	PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Prunus ...	[more]
gi\|657970185\|ref\|XP_008376830.1\|	6.4e-92	81.22	PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus d...	[more]
gi\|593660802\|ref\|XP_007143239.1\|	1.4e-91	81.90	hypothetical protein PHAVU_007G055900g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003685	PsaD

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU71423	watermelon EST collection version 2.0	transcribed_cluster
WMU74009	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021635	Cla021635.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU71423	WMU71423	transcribed_cluster
WMU74009	WMU74009	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003685	Photosystem I PsaD	GENE3D	G3DSA:3.30.1470.10		coord: 74..208 score: 1.3
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 77..207 score: 6.7
IPR003685	Photosystem I PsaD	unknown	SSF64234	Photosystem I subunit PsaD	coord: 74..208 score: 3.01
None	No IPR available	PANTHER	PTHR31982	FAMILY NOT NAMED	coord: 2..209 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021635	Cla97C05G086450	Watermelon (97103) v2	wmwmbB206
Cla021635	Csa3G147780	Cucumber (Chinese Long) v2	cuwmB233
Cla021635	MELO3C006539	Melon (DHL92) v3.5.1	mewmB461
Cla021635	CSPI03G13230	Wild cucumber (PI 183967)	cpiwmB231
Cla021635	Cucsa.254240	Cucumber (Gy14) v1	cgywmB479
Cla021635	CmaCh06G014170	Cucurbita maxima (Rimu)	cmawmB798
Cla021635	CmaCh14G016960	Cucurbita maxima (Rimu)	cmawmB242
Cla021635	CmaCh00G003870	Cucurbita maxima (Rimu)	cmawmB006
Cla021635	CmoCh14G017410	Cucurbita moschata (Rifu)	cmowmB231
Cla021635	Lsi05G014280	Bottle gourd (USVL1VR-Ls)	lsiwmB362
Cla021635	Cp4.1LG03g10890	Cucurbita pepo (Zucchini)	cpewmB613
Cla021635	Cp4.1LG08g04270	Cucurbita pepo (Zucchini)	cpewmB845
Cla021635	CsGy3G013350	Cucumber (Gy14) v2	cgybwmB217
Cla021635	MELO3C006539.2	Melon (DHL92) v3.6.1	medwmB447
Cla021635	Carg23805	Silver-seed gourd	carwmB0211
Cla021635	Carg17412	Silver-seed gourd	carwmB0603
Cla021635	CsaV3_3G013420	Cucumber (Chinese Long) v3	cucwmB239
Cla021635	Bhi01G000599	Wax gourd	wgowmB201

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021635	Silver-seed gourd	carwmB0070
Cla021635	Silver-seed gourd	carwmB0316
Cla021635	Watermelon (97103) v2	wmwmbB217
Cla021635	Wax gourd	wgowmB064
Cla021635	Watermelon (97103) v1	wmwmB138
Cla021635	Cucurbita maxima (Rimu)	cmawmB344
Cla021635	Cucurbita maxima (Rimu)	cmawmB869
Cla021635	Cucurbita moschata (Rifu)	cmowmB793
Cla021635	Cucurbita moschata (Rifu)	cmowmB856
Cla021635	Watermelon (Charleston Gray)	wcgwmB286
Cla021635	Cucurbita pepo (Zucchini)	cpewmB331
Cla021635	Bottle gourd (USVL1VR-Ls)	lsiwmB017
Cla021635	Melon (DHL92) v3.6.1	medwmB228