Lsi05G014280 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G014280
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPhotosystem I reaction center subunit II
Locationchr05 : 22189624 .. 22190247 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGCTGCTCAAGCAACCCTTTTCACCCCATCTCTCTCCACCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCATCAACTCCAAACCCCATCTCAAACCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAGGCCGCAGTTGAGGCTCCTGCTGGATTCTCCCCACCGGAGCTCGACCCAACCACCCCTTCCCCGATCTTCGCCGGCAGCACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTGATCACATGGGAGTCCCCCAAGGAGCAAATCTTCGAGATGCCAACCGGCGGAGCGGCGATCATGCGAGAAGGGCCAAATCTGCTGAAATTGGCGAGGAAAGAGCAGTGCTTGGCTTTGGGGACAAGGCTGAGATCTAAATACAAGATCAAGTACCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGGAAGAATGTAAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCCATGGCTGCTCAAGCAACCCTTTTCACCCCATCTCTCTCCACCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCATCAACTCCAAACCCCATCTCAAACCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAGGCCGCAGTTGAGGCTCCTGCTGGATTCTCCCCACCGGAGCTCGACCCAACCACCCCTTCCCCGATCTTCGCCGGCAGCACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTGATCACATGGGAGTCCCCCAAGGAGCAAATCTTCGAGATGCCAACCGGCGGAGCGGCGATCATGCGAGAAGGGCCAAATCTGCTGAAATTGGCGAGGAAAGAGCAGTGCTTGGCTTTGGGGACAAGGCTGAGATCTAAATACAAGATCAAGTACCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGGAAGAATGTAAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCCATGGCTGCTCAAGCAACCCTTTTCACCCCATCTCTCTCCACCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCATCAACTCCAAACCCCATCTCAAACCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAGGCCGCAGTTGAGGCTCCTGCTGGATTCTCCCCACCGGAGCTCGACCCAACCACCCCTTCCCCGATCTTCGCCGGCAGCACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTGATCACATGGGAGTCCCCCAAGGAGCAAATCTTCGAGATGCCAACCGGCGGAGCGGCGATCATGCGAGAAGGGCCAAATCTGCTGAAATTGGCGAGGAAAGAGCAGTGCTTGGCTTTGGGGACAAGGCTGAGATCTAAATACAAGATCAAGTACCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGGAAGAATGTAAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Homology
[Close]
BLAST of Lsi05G014280 vs. Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 2.4e-107
Identity = 195/207 (94.20%), Postives = 200/207 (96.62%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKST I++PWKQS TLSF+ SKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]
BLAST of Lsi05G014280 vs. Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.8e-86
Identity = 170/211 (80.57%), Postives = 179/211 (84.83%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAE-AEAA 60
           MAMA QA+LFTP LS PKST  T PWKQS  +SF   K      S +R ++  AE A AA
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  VE---APAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
            E   APAGF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]
BLAST of Lsi05G014280 vs. Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.7e-84
Identity = 164/209 (78.47%), Postives = 176/209 (84.21%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAA- 60
           MAMA QA+LFTP+LS PKS+A   PWKQS  L+  + K      S+ R ++  AE  A  
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  -VEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]
BLAST of Lsi05G014280 vs. Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 309.7 bits (792), Expect = 2.4e-83
Identity = 164/217 (75.58%), Postives = 177/217 (81.57%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSL---STPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAE 60
           MAMA QATLF+PS    + P  T +T  +KQ   ++F +     KPAS   S++ +A AE
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-----KPASRHHSIRAAAAAE 60

Query: 61  AAV-------EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120
                     EAP GF+PPELDP TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE
Sbjct: 61  GKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120

Query: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVY 180
           MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVY
Sbjct: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVY 180

Query: 181 PEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           PEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]
BLAST of Lsi05G014280 vs. Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.2e-76
Identity = 154/210 (73.33%), Postives = 166/210 (79.05%), Query Frame = 1 

Query: 3   MAAQAT-LFTPSLSTPKSTAITVPWKQSP----TLSFINSKPHLKPASSSRSLKVSAEAE 62
           MA QA  +F+P+++T  S    +    S     +LSF       K A  +   + S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSFT------KTAIRAEKTESSSAAP 60

Query: 63  AAVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]
BLAST of Lsi05G014280 vs. TrEMBL
Match: A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 2.7e-105
Identity = 195/207 (94.20%), Postives = 200/207 (96.62%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKST I++PWKQS TLSF+ SKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]
BLAST of Lsi05G014280 vs. TrEMBL
Match: B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis GN=RCOM_0677760 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.3e-86
Identity = 170/209 (81.34%), Postives = 184/209 (88.04%), Query Frame = 1 

Query: 1   MAMAAQATLFTPS-LSTPKSTA-ITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEA 60
           MAMA QA+LFTP+ LSTPKS+    VPWKQS  LS   +KP  K + + +++K +A    
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPR-KYSIAQKTIKAAAAEGK 60

Query: 61  AVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]
BLAST of Lsi05G014280 vs. TrEMBL
Match: A0A068TRV1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.1e-86
Identity = 163/207 (78.74%), Postives = 184/207 (88.89%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QA+LFTP+LS+P S  +TVPWKQS  ++F + KP +K   ++R+++  AE  +  
Sbjct: 1   MAMATQASLFTPTLSSP-SDRVTVPWKQSSLVAFASPKP-IKTNMATRTIRAMAEEASTA 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
            APAGF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAIMR
Sbjct: 61  AAPAGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           +GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKISYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VG N RSIGKN+SPIEVKFTGKQVY+L
Sbjct: 181 VGLNLRSIGKNISPIEVKFTGKQVYEL 205

[Close]
BLAST of Lsi05G014280 vs. TrEMBL
Match: A0A0L9U000_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g227000 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.8e-86
Identity = 169/209 (80.86%), Postives = 180/209 (86.12%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKST-AITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAA 60
           MAMA QA+LF+PS S  K T  ++VPWKQSPT SF + KP LK + + R+      AEA 
Sbjct: 1   MAMATQASLFSPSFSALKPTDRVSVPWKQSPTFSFSSPKP-LKFSKTIRAAAADETAEAV 60

Query: 61  V-EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PPELDP TPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           +GVGQNFRSIGKNV+PIEVKFTGKQ YDL
Sbjct: 181 QGVGQNFRSIGKNVNPIEVKFTGKQPYDL 208

[Close]
BLAST of Lsi05G014280 vs. TrEMBL
Match: A0A0S3SMI8_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.08G062100 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.8e-86
Identity = 169/209 (80.86%), Postives = 180/209 (86.12%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKST-AITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAA 60
           MAMA QA+LF+PS S  K T  ++VPWKQSPT SF + KP LK + + R+      AEA 
Sbjct: 1   MAMATQASLFSPSFSALKPTDRVSVPWKQSPTFSFSSPKP-LKFSKTIRAAAADETAEAV 60

Query: 61  V-EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PPELDP TPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           +GVGQNFRSIGKNV+PIEVKFTGKQ YDL
Sbjct: 181 QGVGQNFRSIGKNVNPIEVKFTGKQPYDL 208

[Close]
BLAST of Lsi05G014280 vs. TAIR10
Match: AT1G03130.1 (AT1G03130.1 photosystem I subunit D-2)

HSP 1 Score: 286.6 bits (732), Expect = 1.2e-77
Identity = 154/210 (73.33%), Postives = 166/210 (79.05%), Query Frame = 1 

Query: 3   MAAQAT-LFTPSLSTPKSTAITVPWKQSP----TLSFINSKPHLKPASSSRSLKVSAEAE 62
           MA QA  +F+P+++T  S    +    S     +LSF       K A  +   + S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSFT------KTAIRAEKTESSSAAP 60

Query: 63  AAVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]
BLAST of Lsi05G014280 vs. TAIR10
Match: AT4G02770.1 (AT4G02770.1 photosystem I subunit D-1)

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-76
Identity = 153/211 (72.51%), Postives = 166/211 (78.67%), Query Frame = 1 

Query: 3   MAAQAT-LFTPSLSTPKSTAITVPWKQSPT-----LSFINSKPHLKPASSSRSLKVSAEA 62
           MA QA  +F  +++T  ++ +      S T     LSF  +    +   SS +   +A A
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAA---AAAA 60

Query: 63  EAAVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 122
            A  EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 123 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 182
           AIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 183 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]
BLAST of Lsi05G014280 vs. NCBI nr
Match: gi|659076451|ref|XP_008438687.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 395.6 bits (1015), Expect = 5.4e-107
Identity = 198/207 (95.65%), Postives = 204/207 (98.55%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKS+AI++PWKQSPTLSF+ SKPHLK ASSSRSLKVSAEAEAAV
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]
BLAST of Lsi05G014280 vs. NCBI nr
Match: gi|449432708|ref|XP_004134141.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 3.9e-105
Identity = 195/207 (94.20%), Postives = 200/207 (96.62%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKST I++PWKQS TLSF+ SKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]
BLAST of Lsi05G014280 vs. NCBI nr
Match: gi|657970185|ref|XP_008376830.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus domestica])

HSP 1 Score: 331.6 bits (849), Expect = 9.5e-88
Identity = 173/214 (80.84%), Postives = 188/214 (87.85%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTA--ITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEA 60
           MAMA QA+LFTP+ S PK+TA   T PWKQS + SF+  KP LK  S++R+++++A AE 
Sbjct: 1   MAMATQASLFTPTPSAPKTTADRTTTPWKQSVSSSFMAPKP-LK-LSTARTMRINASAEE 60

Query: 61  AV-----EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120
                  EAP GF+PPELDPTTPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPT
Sbjct: 61  KTVTPTKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPT 120

Query: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180
           GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180

Query: 181 VNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VNPGR+GVGQNFRSIGKNVSPIEVKFTGKQVYD+
Sbjct: 181 VNPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDI 212

[Close]
BLAST of Lsi05G014280 vs. NCBI nr
Match: gi|645236013|ref|XP_008224535.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Prunus mume])

HSP 1 Score: 331.3 bits (848), Expect = 1.2e-87
Identity = 171/214 (79.91%), Postives = 188/214 (87.85%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTA--ITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEA 60
           MAMA QATLFTP+ S PK++    TVPWKQS + SF+  KP L  +S++R+++++A AE 
Sbjct: 1   MAMATQATLFTPTPSAPKTSVERSTVPWKQSVSSSFMAPKP-LMLSSTTRTMRINAAAEE 60

Query: 61  AV-----EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120
                  EAP GF+PPELDPTTPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPT
Sbjct: 61  KTVAPPKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPT 120

Query: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180
           GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180

Query: 181 VNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VNPGR+GVGQNFRSIGKNV+PIEVKFTGKQVYD+
Sbjct: 181 VNPGRQGVGQNFRSIGKNVNPIEVKFTGKQVYDI 213

[Close]
BLAST of Lsi05G014280 vs. NCBI nr
Match: gi|658011448|ref|XP_008340966.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus domestica])

HSP 1 Score: 330.1 bits (845), Expect = 2.8e-87
Identity = 172/215 (80.00%), Postives = 188/215 (87.44%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTA--ITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEA 60
           MAMA QA+LFTP+ S PK+TA   T PWKQS + SF+  KP LK  S++R+++++A AE 
Sbjct: 1   MAMATQASLFTPTPSVPKTTADRTTAPWKQSVSSSFMPPKP-LK-LSTTRTMRINASAEE 60

Query: 61  AV------EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 120
                   EAP GF+PPELDPTTPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMP
Sbjct: 61  KTVTTTKEEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMP 120

Query: 121 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 180
           TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE
Sbjct: 121 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 180

Query: 181 KVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           KVNPGR+GVGQNFRSIGKNV+PIEVKFTGKQVYD+
Sbjct: 181 KVNPGRQGVGQNFRSIGKNVNPIEVKFTGKQVYDI 213

The following BLAST results are available for this feature:
BLAST of Lsi05G014280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSAD_CUCSA2.4e-10794.20Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=ps... [more]
PSAD_SOLLC1.8e-8680.57Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ... [more]
PSAD_NICSY1.7e-8478.47Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ... [more]
PSAD_SPIOL2.4e-8375.58Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=... [more]
PSAD2_ARATH2.2e-7673.33Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian... [more]
BLAST of Lsi05G014280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4Y6_CUCSA2.7e-10594.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1[more]
B9RSQ3_RICCO1.3e-8681.34Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus commu... [more]
A0A068TRV1_COFCA2.1e-8678.74Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1[more]
A0A0L9U000_PHAAN4.8e-8680.86Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g227000 PE=4 SV=1[more]
A0A0S3SMI8_PHAAN4.8e-8680.86Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.08... [more]
BLAST of Lsi05G014280 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03130.11.2e-7773.33 photosystem I subunit D-2[more]
AT4G02770.11.1e-7672.51 photosystem I subunit D-1[more]
BLAST of Lsi05G014280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076451|ref|XP_008438687.1|5.4e-10795.65PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo... [more]
gi|449432708|ref|XP_004134141.1|3.9e-10594.20PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati... [more]
gi|657970185|ref|XP_008376830.1|9.5e-8880.84PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus d... [more]
gi|645236013|ref|XP_008224535.1|1.2e-8779.91PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Prunus ... [more]
gi|658011448|ref|XP_008340966.1|2.8e-8780.00PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus d... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009538photosystem I reaction center
GO:0009522photosystem I
Vocabulary: INTERPRO
TermDefinition
IPR003685PsaD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0009522 photosystem I
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G014280.1Lsi05G014280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003685Photosystem I PsaDGENE3DG3DSA:3.30.1470.10coord: 72..206
score: 1.2
IPR003685Photosystem I PsaDPFAMPF02531PsaDcoord: 75..205
score: 6.5
IPR003685Photosystem I PsaDunknownSSF64234Photosystem I subunit PsaDcoord: 72..206
score: 3.01
NoneNo IPR availablePANTHERPTHR31982FAMILY NOT NAMEDcoord: 2..207
score: 4.5E