Cla97C05G086450 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G086450
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Photosystem I reaction center subunit II
Location	Cla97Chr05 : 4816670 .. 4817299 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCAGCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCAGCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCCATGGCAGCTCAAGCAACCCTCTTCACCCCATCTCTCTCCAGCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCAACTCCAAGCCCCTCAAGCCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAAGCCCAGGCGGCCCCGGTCGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAACCACCCCTTCCCCAATCTTCGCCGGCAGTACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGAGTCCCCCAAGGAGCAAATATTCGAGATGCCGACCGGTGGCGCGGCGATTATGCGAGAAGGGCCGAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGCTGAGATCTAAGTACAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAATATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAATTTCAGGTCTATTGGGAAGAATGTCAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSAEAEAQAAPVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

[Close]

BLAST of Cla97C05G086450 vs. NCBI nr
Match: XP_008438687.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 372.5 bits (955), Expect = 9.6e-100
Identity = 192/210 (91.43%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSXXXXXXX 60
           MAMA QATLFTPSLS+PKS+AI++PWKQSPTLSFL SKP LK ASSSRSLKVS       
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVS---AEAE 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A VEAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AAVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cla97C05G086450 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 372.1 bits (954), Expect = 1.3e-99
Identity = 190/210 (90.48%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPL-KPASSSRSLKVSXXXXXXX 60
           MAMAAQATLFTPSLS+PKSTA+T+PWKQS TLSF+NSKPL KPA+SSR +KVS       
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVS--AEAEA 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Cla97C05G086450 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.1 bits (954), Expect = 1.3e-99
Identity = 190/210 (90.48%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPL-KPASSSRSLKVSXXXXXXX 60
           MAMAAQATLFTPSLS+PKSTA+T+PWKQS TLSF+NSKPL KPA+SSR +KVS       
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVS-AEAEAA 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209

[Close]

BLAST of Cla97C05G086450 vs. NCBI nr
Match: XP_022979397.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima])

HSP 1 Score: 370.2 bits (949), Expect = 4.8e-99
Identity = 189/210 (90.00%), Postives = 197/210 (93.81%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPL-KPASSSRSLKVSXXXXXXX 60
           MAMAAQATLFTPSLS+PKSTA+T+PWKQS TL F+NSKPL KPA+SSR +KVS       
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVS--AEAEA 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A  EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Cla97C05G086450 vs. NCBI nr
Match: XP_004134141.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus] >P32869.1 RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=PS I subunit 5; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor >KGN56995.1 hypothetical protein Csa_3G147780 [Cucumis sativus] >prf||1710320A photosystem I 20kD protein)

HSP 1 Score: 367.5 bits (942), Expect = 3.1e-98
Identity = 190/210 (90.48%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSXXXXXXX 60
           MAMA QATLFTPSLS+PKST I++PWKQS TLSFL SKP LK ASSSRS KVS       
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVS---AEAE 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
             VEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  TSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cla97C05G086450 vs. TrEMBL
Match: tr|A0A1S3AXN9|A0A1S3AXN9_CUCME (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 6.3e-100
Identity = 192/210 (91.43%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSXXXXXXX 60
           MAMA QATLFTPSLS+PKS+AI++PWKQSPTLSFL SKP LK ASSSRSLKVS       
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVS---AEAE 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
           A VEAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  AAVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cla97C05G086450 vs. TrEMBL
Match: tr|A0A0A0L4Y6|A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 2.0e-98
Identity = 190/210 (90.48%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSXXXXXXX 60
           MAMA QATLFTPSLS+PKST I++PWKQS TLSFL SKP LK ASSSRS KVS       
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVS---AEAE 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
             VEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  TSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cla97C05G086450 vs. TrEMBL
Match: tr|A0A251QR03|A0A251QR03_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G011500 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 3.0e-89
Identity = 170/213 (79.81%), Postives = 188/213 (88.26%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTA--ITVPWKQSPTLSFLNSKPLKPASSSRSLKVSXXXXXX 60
           MAMA QATLFTP+ S+PK++    TVPWKQS + SF+  KPLK +S++R+++++      
Sbjct: 1   MAMATQATLFTPTPSAPKTSVERSTVPWKQSVSSSFMAPKPLKLSSTTRTMRINAAAEEK 60

Query: 61  XA--PVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
               P EAP GF+PPELDPTTPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPTG
Sbjct: 61  TVAPPKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPTG 120

Query: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           NPGR+GVGQNFRSIGKNV+PIEVKFTGKQVYD+
Sbjct: 181 NPGRQGVGQNFRSIGKNVNPIEVKFTGKQVYDI 213

[Close]

BLAST of Cla97C05G086450 vs. TrEMBL
Match: tr|A0A2I4G985|A0A2I4G985_9ROSI (photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109005852 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 5.0e-89
Identity = 172/212 (81.13%), Postives = 185/212 (87.26%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTA--ITVPWKQSPTLSFLNSKPLKPASSSRSLKVSXXXXXX 60
           MAMA QA+LFTP LS+ KS A  +TVP KQSPTLSF + KP K     R++K +      
Sbjct: 1   MAMATQASLFTPPLSASKSGADRVTVPGKQSPTLSFTSPKPFKSFPGQRTIKAATADGKT 60

Query: 61  XAPV-EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
            AP  EAP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGG
Sbjct: 61  EAPTKEAPVGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGG 120

Query: 121 AAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           PGR+GVG NFRSIGKNV+PIEVKFTGKQVYDL
Sbjct: 181 PGRQGVGVNFRSIGKNVNPIEVKFTGKQVYDL 212

[Close]

BLAST of Cla97C05G086450 vs. TrEMBL
Match: tr|A0A2I4GSF6|A0A2I4GSF6_9ROSI (photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109010445 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 8.6e-89
Identity = 170/210 (80.95%), Postives = 184/210 (87.62%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKS-TAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSXXXXXXX 60
           MAMA QA+LFTP LS+ KS   +TVPWKQS TLSF + K LK + S R++K +       
Sbjct: 1   MAMATQASLFTPPLSASKSGDRVTVPWKQSSTLSFTSPKQLKFSVSQRTIKAAAGEAAEA 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
              EAP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA
Sbjct: 61  PTKEAPVGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           R+GVG NFRSIGKNV+PIEVKFTGKQVYDL
Sbjct: 181 RQGVGVNFRSIGKNVNPIEVKFTGKQVYDL 210

[Close]

BLAST of Cla97C05G086450 vs. Swiss-Prot
Match: sp|P32869|PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.0e-100
Identity = 190/210 (90.48%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKP-LKPASSSRSLKVSXXXXXXX 60
           MAMA QATLFTPSLS+PKST I++PWKQS TLSFL SKP LK ASSSRS KVS       
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVS---AEAE 60

Query: 61  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
             VEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 61  TSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120

Query: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cla97C05G086450 vs. Swiss-Prot
Match: sp|P12372|PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.7e-84
Identity = 166/211 (78.67%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPLK-PASSSRSLK-VSXXXXXX 60
           MAMA QA+LFTP LS PKST  T PWKQS  +SF   K LK   S +R ++ ++      
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  XAPVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
                APAGF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]

BLAST of Cla97C05G086450 vs. Swiss-Prot
Match: sp|P29302|PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.5e-83
Identity = 162/209 (77.51%), Postives = 174/209 (83.25%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSSPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSXXXXXXXA 60
           MAMA QA+LFTP+LS+PKS+A   PWKQS  L+  + K LK   S+     +        
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  PVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]

BLAST of Cla97C05G086450 vs. Swiss-Prot
Match: sp|P12353|PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 305.8 bits (782), Expect = 3.6e-82
Identity = 165/216 (76.39%), Postives = 177/216 (81.94%), Query Frame = 0


Query: 1   MAMAAQATLFTP-SLSS--PKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSXXXXX 60
           MAMA QATLF+P SLSS  P  T +T  +KQ   ++F +    KPAS   S++ +     
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS----KPASRHHSIRAAAAAEG 60

Query: 61  XXAPV----EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120
            X       EAP GF+PPELDP TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM
Sbjct: 61  KXXXXTETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120

Query: 121 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYP 180
           PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYP
Sbjct: 121 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYP 180

Query: 181 EKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 EKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]

BLAST of Cla97C05G086450 vs. Swiss-Prot
Match: sp|Q9S7H1|PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=psaD1 PE=1 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 6.6e-76
Identity = 138/150 (92.00%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 60  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 119
           A  EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 59  ATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 118

Query: 120 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 179
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 119 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 178

Query: 180 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 179 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of Cla97C05G086450 vs. TAIR10
Match: AT4G02770.1 (photosystem I subunit D-1)

HSP 1 Score: 285.0 bits (728), Expect = 3.6e-77
Identity = 138/150 (92.00%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 60  APVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 119
           A  EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 59  ATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 118

Query: 120 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 179
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 119 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 178

Query: 180 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 179 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of Cla97C05G086450 vs. TAIR10
Match: AT1G03130.1 (photosystem I subunit D-2)

HSP 1 Score: 281.6 bits (719), Expect = 4.0e-76
Identity = 148/210 (70.48%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSSPKSTAITVPWKQSPTLSFLNSKPLKPASSSRSLKVSXXXXXXXAP 62
           MA QA  +F+P++++  S        +   L   + +P   + +  +++         AP
Sbjct: 1   MATQAAGIFSPAITTTTSAV------KKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAP 60

Query: 63  V--EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
              EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

The following BLAST results are available for this feature:

BLAST of Cla97C05G086450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438687.1	9.6e-100	91.43	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo...	[more]
XP_022955930.1	1.3e-99	90.48	photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]	[more]
XP_023528925.1	1.3e-99	90.48	photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022979397.1	4.8e-99	90.00	photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima]	[more]
XP_004134141.1	3.1e-98	90.48	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati...	[more]

BLAST of Cla97C05G086450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXN9\|A0A1S3AXN9_CUCME	6.3e-100	91.43	photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0L4Y6\|A0A0A0L4Y6_CUCSA	2.0e-98	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1	[more]
tr\|A0A251QR03\|A0A251QR03_PRUPE	3.0e-89	79.81	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G011500 PE=4 SV=1	[more]
tr\|A0A2I4G985\|A0A2I4G985_9ROSI	5.0e-89	81.13	photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX...	[more]
tr\|A0A2I4GSF6\|A0A2I4GSF6_9ROSI	8.6e-89	80.95	photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX...	[more]

BLAST of Cla97C05G086450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P32869\|PSAD_CUCSA	1.0e-100	90.48	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
sp\|P12372\|PSAD_SOLLC	1.7e-84	78.67	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
sp\|P29302\|PSAD_NICSY	1.5e-83	77.51	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
sp\|P12353\|PSAD_SPIOL	3.6e-82	76.39	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
sp\|Q9S7H1\|PSAD1_ARATH	6.6e-76	92.00	Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Cla97C05G086450 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02770.1	3.6e-77	92.00	photosystem I subunit D-1	[more]
AT1G03130.1	4.0e-76	70.48	photosystem I subunit D-2	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR036579	PsaD_sf
IPR003685	PsaD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G086450.1	Cla97C05G086450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.1470.10		coord: 67..209 e-value: 2.3E-78 score: 262.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..77
None	No IPR available	PANTHER	PTHR31982:SF4	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..209
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 77..207 e-value: 6.9E-68 score: 226.3
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	FAMILY NOT NAMED	coord: 1..209
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	SSF64234	Photosystem I subunit PsaD	coord: 74..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G086450	Cla021635	Watermelon (97103) v1	wmwmbB206
Cla97C05G086450	Csa3G147780	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G086450	MELO3C006539	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G086450	CSPI03G13230	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G086450	Cucsa.254240	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G086450	CmaCh00G003870	Cucurbita maxima (Rimu)	cmawmbB011
Cla97C05G086450	CmaCh06G014170	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G086450	Lsi05G014280	Bottle gourd (USVL1VR-Ls)	lsiwmbB330
Cla97C05G086450	CsGy3G013350	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G086450	MELO3C006539.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G086450	Carg17412	Silver-seed gourd	carwmbB0631
Cla97C05G086450	CsaV3_3G013420	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G086450	Bhi01G000599	Wax gourd	wgowmbB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G086450	Watermelon (97103) v2	wmbwmbB137
Cla97C05G086450	Silver-seed gourd	carwmbB0333
Cla97C05G086450	Silver-seed gourd	carwmbB0883
Cla97C05G086450	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G086450	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G086450	Cucurbita maxima (Rimu)	cmawmbB914
Cla97C05G086450	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G086450	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G086450	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G086450	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G086450	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G086450	Watermelon (97103) v1	wmwmbB402
Cla97C05G086450	Wax gourd	wgowmbB074