CsaV3_3G013420 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTAGAGATAATTGTGTTTTCTATTTGAAGATTGCATCTAAAGGTATTTTCATTTATTGTTTGGAACTTAAAATAAAATATCAATATTGAATCCAATTTTGACAAAACAGAGTTGGAATGAACTGAAGATGAAATAAAAGCTGTGGGTGAGGTCTCCATATCAAAAACTCTCATTCTAATTGGCCAACCAAAGATCATCTTATCCACTCTCCAAATTCCCATCATCCACACAAAAACCCCAAATCCAATTCTTCTTATTATTCTTCCTCAATCCTCCATTCTCAATCCACCATTCCCAATCCTCTTCCTCTGCTCCAAATCCCATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCACCGGCATTTCCATTCCATGGAAGCAATCCTCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGGCCGCCTCCTCTTCCCGCTCTTTCAAGGTCTCCGCCGAAGCCGAGACTTCTGTCGAGGCTCCGGCCGGATTCTCCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCGATCTTCGCGGGCAGCACCGGAGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCGACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATCGGGAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAAGAAATTTAATTTCTTATGTTCTTATATGCTCTTTTTCTTTATGATGTCAATTATGAATCATACTCTCTTATATTAATTCTTATAAGTGTATGTTCTTGATCTTCTGTTCTGATTTTGTCTTGTGGAGTTATGATTTGTGTGTTAGATGTAAATTTGTCAGTTGTTTTTAGTGATCATGCTAGAAAATTCTGTGATGAAATTGATCTCTTTTTGTGTATGTGCGTATGTGACTTGCTTATGAGGTAAATTGGGTTATTTTGTTTAATTTCATTAACTATTTCGTAACACATAACTTTCACGAGATGAATGTTCGGGTTCTCCTAAACAGCTTATATTGAAACAAGAGATTCTCCCATATCATAGGCTTCACTCTAAATTTTGTTTAACATTTAAGTTTTTTTCAAAATCATTACTTGAGGATTAGATTTGTGTTGAGCTATGATCGGCCCTT ATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCACCGGCATTTCCATTCCATGGAAGCAATCCTCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGGCCGCCTCCTCTTCCCGCTCTTTCAAGGTCTCCGCCGAAGCCGAGACTTCTGTCGAGGCTCCGGCCGGATTCTCCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCGATCTTCGCGGGCAGCACCGGAGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCGACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATCGGGAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAA ATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCACCGGCATTTCCATTCCATGGAAGCAATCCTCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGGCCGCCTCCTCTTCCCGCTCTTTCAAGGTCTCCGCCGAAGCCGAGACTTCTGTCGAGGCTCCGGCCGGATTCTCCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCGATCTTCGCGGGCAGCACCGGAGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCGACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATCGGGAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAA MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL
BLAST of CsaV3_3G013420 vs. NCBI nr
Match: XP_004134141.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus] >P32869.1 RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=PS I subunit 5; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor >KGN56995.1 hypothetical protein Csa_3G147780 [Cucumis sativus] >prf||1710320A photosystem I 20kD protein) HSP 1 Score: 408.7 bits (1049), Expect = 1.2e-110 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. NCBI nr
Match: XP_008438687.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo]) HSP 1 Score: 394.8 bits (1013), Expect = 1.8e-106 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]) HSP 1 Score: 376.7 bits (966), Expect = 5.1e-101 Identity = 191/208 (91.83%), Postives = 198/208 (95.19%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 376.3 bits (965), Expect = 6.6e-101 Identity = 191/209 (91.39%), Postives = 198/209 (94.74%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. NCBI nr
Match: XP_022979397.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima]) HSP 1 Score: 374.8 bits (961), Expect = 1.9e-100 Identity = 190/208 (91.35%), Postives = 197/208 (94.71%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. TAIR10
Match: AT1G03130.1 (photosystem I subunit D-2) HSP 1 Score: 288.5 bits (737), Expect = 3.3e-78 Identity = 155/210 (73.81%), Postives = 168/210 (80.00%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. TAIR10
Match: AT4G02770.1 (photosystem I subunit D-1) HSP 1 Score: 288.1 bits (736), Expect = 4.3e-78 Identity = 155/211 (73.46%), Postives = 172/211 (81.52%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. Swiss-Prot
Match: sp|P32869|PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1) HSP 1 Score: 408.7 bits (1049), Expect = 3.9e-113 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. Swiss-Prot
Match: sp|P12372|PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 1.8e-86 Identity = 168/211 (79.62%), Postives = 178/211 (84.36%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. Swiss-Prot
Match: sp|P29302|PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1) HSP 1 Score: 315.1 bits (806), Expect = 5.9e-85 Identity = 165/209 (78.95%), Postives = 176/209 (84.21%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. Swiss-Prot
Match: sp|P12353|PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2) HSP 1 Score: 307.8 bits (787), Expect = 9.4e-83 Identity = 166/217 (76.50%), Postives = 180/217 (82.95%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. Swiss-Prot
Match: sp|Q9SA56|PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 5.9e-77 Identity = 155/210 (73.81%), Postives = 168/210 (80.00%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. TrEMBL
Match: tr|A0A0A0L4Y6|A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1) HSP 1 Score: 408.7 bits (1049), Expect = 7.9e-111 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. TrEMBL
Match: tr|A0A1S3AXN9|A0A1S3AXN9_CUCME (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 1.2e-106 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. TrEMBL
Match: tr|B9RSQ3|B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_0677760 PE=4 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 6.5e-89 Identity = 174/209 (83.25%), Postives = 188/209 (89.95%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. TrEMBL
Match: tr|A0A2I4GSF6|A0A2I4GSF6_9ROSI (photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109010445 PE=4 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 1.9e-88 Identity = 176/212 (83.02%), Postives = 188/212 (88.68%), Query Frame = 0
BLAST of CsaV3_3G013420 vs. TrEMBL
Match: tr|A0A251QR03|A0A251QR03_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G011500 PE=4 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 3.2e-88 Identity = 170/214 (79.44%), Postives = 189/214 (88.32%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |