CmaCh14G016960 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G016960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Photosystem I reaction center subunit II
Location	Cma_Chr14 : 12598569 .. 12599195 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCTCGACCCCCAAATCCACCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTGCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTTTCAGCTGAGGCCGAGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAATCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCATCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATAGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCTCGACCCCCAAATCCACCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTGCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTTTCAGCTGAGGCCGAGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAATCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCATCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATAGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCTCGACCCCCAAATCCACCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTGCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTTTCAGCTGAGGCCGAGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAATCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCATCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATAGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

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BLAST of CmaCh14G016960 vs. Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.1e-102
Identity = 190/208 (91.35%), Postives = 197/208 (94.71%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTL F+ SKP +K A+SSR  KVSAEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CmaCh14G016960 vs. Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.3e-87
Identity = 170/211 (80.57%), Postives = 180/211 (85.31%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP LS PKST  T PWKQS  + F   K L    + +R ++  AE   AA
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  TE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
           TE   APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

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BLAST of CmaCh14G016960 vs. Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.9e-84
Identity = 163/209 (77.99%), Postives = 177/209 (84.69%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS PKS+A   PWKQS  L   + K L    ++ R ++  AE  A  
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  -TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

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BLAST of CmaCh14G016960 vs. Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 308.9 bits (790), Expect = 4.2e-83
Identity = 166/217 (76.50%), Postives = 181/217 (83.41%), Query Frame = 1


Query: 1   MAMAAQATLFTPSL---STPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAE 60
           MAMA QATLF+PS    + P  T +T  +KQ S + F +     KPA+    ++ +A AE
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-----KPASRHHSIRAAAAAE 60

Query: 61  ---AAATE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120
              AAATE   AP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE
Sbjct: 61  GKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120

Query: 121 MPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVY 180
           MPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVY
Sbjct: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVY 180

Query: 181 PEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           PEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

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BLAST of CmaCh14G016960 vs. Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 8.4e-76
Identity = 153/208 (73.56%), Postives = 165/208 (79.33%), Query Frame = 1


Query: 3   MAAQAT-LFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKV-SAEAEAAA 62
           MA QA  +F+P+++T  S    +    SS       K L     + R  K  S+ A  A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSH----RPKSLSFTKTAIRAEKTESSSAAPAV 60

Query: 63  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

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BLAST of CmaCh14G016960 vs. TrEMBL
Match: A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.2e-100
Identity = 190/208 (91.35%), Postives = 197/208 (94.71%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTL F+ SKP +K A+SSR  KVSAEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CmaCh14G016960 vs. TrEMBL
Match: A0A068TRV1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.9e-87
Identity = 168/208 (80.77%), Postives = 186/208 (89.42%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS+P S  VT+PWKQSS + F + KP IK   ++R ++  AE EA+ 
Sbjct: 1   MAMATQASLFTPTLSSP-SDRVTVPWKQSSLVAFASPKP-IKTNMATRTIRAMAE-EAST 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
             APAGF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAIM
Sbjct: 61  AAAPAGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           RQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKISYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVG N RSIGKN+SPIEVKFTGKQVY+L
Sbjct: 181 GVGLNLRSIGKNISPIEVKFTGKQVYEL 205

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BLAST of CmaCh14G016960 vs. TrEMBL
Match: B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis GN=RCOM_0677760 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.5e-87
Identity = 173/210 (82.38%), Postives = 185/210 (88.10%), Query Frame = 1


Query: 1   MAMAAQATLFTPS-LSTPKSTA-VTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEA 60
           MAMA QA+LFTP+ LSTPKS+    +PWKQSS L    +KP  K + + + +K +A AE 
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPR-KYSIAQKTIKAAA-AEG 60

Query: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
              EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA
Sbjct: 61  KTKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAA 120

Query: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of CmaCh14G016960 vs. TrEMBL
Match: A9PJR8_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.6e-86
Identity = 172/208 (82.69%), Postives = 181/208 (87.02%), Query Frame = 1


Query: 3   MAAQATLFTP-SLSTPKSTAVTI-PWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 62
           MAAQA+LFTP +LST KS+   I PWKQSS L   N KP        R +KV+A  E A 
Sbjct: 1   MAAQASLFTPPTLSTLKSSNQAIAPWKQSSFLPISNVKP-------QRTMKVAAAEETAV 60

Query: 63  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 201

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BLAST of CmaCh14G016960 vs. TrEMBL
Match: A0A0D2TUC3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.1e-86
Identity = 166/213 (77.93%), Postives = 182/213 (85.45%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAE--- 60
           MAMA QA LFTP+++TPKS A   PWK +S+  F  S   +  + + R ++ +A  E   
Sbjct: 1   MAMATQAGLFTPTITTPKSLA---PWKPASSFSFATSSKSLNFSMAQRTIRAAAADEEAS 60

Query: 61  --AAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
             AA  EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTG
Sbjct: 61  SAAATKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTG 120

Query: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           NPGR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210

[Close]

BLAST of CmaCh14G016960 vs. TAIR10
Match: AT1G03130.1 (AT1G03130.1 photosystem I subunit D-2)

HSP 1 Score: 284.6 bits (727), Expect = 4.7e-77
Identity = 153/208 (73.56%), Postives = 165/208 (79.33%), Query Frame = 1


Query: 3   MAAQAT-LFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKV-SAEAEAAA 62
           MA QA  +F+P+++T  S    +    SS       K L     + R  K  S+ A  A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSH----RPKSLSFTKTAIRAEKTESSSAAPAV 60

Query: 63  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of CmaCh14G016960 vs. TAIR10
Match: AT4G02770.1 (AT4G02770.1 photosystem I subunit D-1)

HSP 1 Score: 281.2 bits (718), Expect = 5.2e-76
Identity = 153/211 (72.51%), Postives = 166/211 (78.67%), Query Frame = 1


Query: 3   MAAQAT-LFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAAT 62
           MA QA  +F  +++T  ++ V      S+T      K L     + R  K  + A AAA 
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTH---RPKSLSFTKTAIRAEKTDSSAAAAAA 60

Query: 63  ----EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 122
               EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 123 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 182
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 183 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of CmaCh14G016960 vs. NCBI nr
Match: gi|659076451|ref|XP_008438687.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 374.4 bits (960), Expect = 1.3e-100
Identity = 190/208 (91.35%), Postives = 199/208 (95.67%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKS+A++IPWKQS TL F+ SKP +K A+SSR +KVSAEAEAA 
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmaCh14G016960 vs. NCBI nr
Match: gi|449432708|ref|XP_004134141.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus])

HSP 1 Score: 374.0 bits (959), Expect = 1.7e-100
Identity = 190/208 (91.35%), Postives = 197/208 (94.71%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTL F+ SKP +K A+SSR  KVSAEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmaCh14G016960 vs. NCBI nr
Match: gi|661897328|emb|CDO99040.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 330.1 bits (845), Expect = 2.8e-87
Identity = 168/208 (80.77%), Postives = 186/208 (89.42%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS+P S  VT+PWKQSS + F + KP IK   ++R ++  AE EA+ 
Sbjct: 1   MAMATQASLFTPTLSSP-SDRVTVPWKQSSLVAFASPKP-IKTNMATRTIRAMAE-EAST 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
             APAGF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAIM
Sbjct: 61  AAAPAGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           RQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKISYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVG N RSIGKN+SPIEVKFTGKQVY+L
Sbjct: 181 GVGLNLRSIGKNISPIEVKFTGKQVYEL 205

[Close]

BLAST of CmaCh14G016960 vs. NCBI nr
Match: gi|255551453|ref|XP_002516772.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Ricinus communis])

HSP 1 Score: 329.7 bits (844), Expect = 3.6e-87
Identity = 173/210 (82.38%), Postives = 185/210 (88.10%), Query Frame = 1


Query: 1   MAMAAQATLFTPS-LSTPKSTA-VTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEA 60
           MAMA QA+LFTP+ LSTPKS+    +PWKQSS L    +KP  K + + + +K +A AE 
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPR-KYSIAQKTIKAAA-AEG 60

Query: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
              EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA
Sbjct: 61  KTKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAA 120

Query: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of CmaCh14G016960 vs. NCBI nr
Match: gi|970035543|ref|XP_015079105.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Solanum pennellii])

HSP 1 Score: 327.4 bits (838), Expect = 1.8e-86
Identity = 171/211 (81.04%), Postives = 182/211 (86.26%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS PKSTA   PWKQS  + F   KPL    + +R ++  AE   AA
Sbjct: 1   MAMATQASLFTPALSVPKSTA---PWKQS-LVSFSTPKPLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  TE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
           TE   APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 207

The following BLAST results are available for this feature:

BLAST of CmaCh14G016960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAD_CUCSA	1.1e-102	91.35	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=ps...	[more]
PSAD_SOLLC	1.3e-87	80.57	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
PSAD_NICSY	2.9e-84	77.99	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
PSAD_SPIOL	4.2e-83	76.50	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAD2_ARATH	8.4e-76	73.56	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CmaCh14G016960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Y6_CUCSA	1.2e-100	91.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1	[more]
A0A068TRV1_COFCA	1.9e-87	80.77	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1	[more]
B9RSQ3_RICCO	2.5e-87	82.38	Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus commu...	[more]
A9PJR8_9ROSI	1.6e-86	82.69	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]
A0A0D2TUC3_GOSRA	2.1e-86	77.93	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1	[more]

BLAST of CmaCh14G016960 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03130.1	4.7e-77	73.56	photosystem I subunit D-2	[more]
AT4G02770.1	5.2e-76	72.51	photosystem I subunit D-1	[more]

BLAST of CmaCh14G016960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076451\|ref\|XP_008438687.1\|	1.3e-100	91.35	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo...	[more]
gi\|449432708\|ref\|XP_004134141.1\|	1.7e-100	91.35	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati...	[more]
gi\|661897328\|emb\|CDO99040.1\|	2.8e-87	80.77	unnamed protein product [Coffea canephora]	[more]
gi\|255551453\|ref\|XP_002516772.1\|	3.6e-87	82.38	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Ricinus comm...	[more]
gi\|970035543\|ref\|XP_015079105.1\|	1.8e-86	81.04	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Solanum penn...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003685	PsaD

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G016960.1	CmaCh14G016960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003685	Photosystem I PsaD	GENE3D	G3DSA:3.30.1470.10		coord: 73..207 score: 1.5
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 76..206 score: 6.2
IPR003685	Photosystem I PsaD	unknown	SSF64234	Photosystem I subunit PsaD	coord: 73..207 score: 4.32
None	No IPR available	PANTHER	PTHR31982	FAMILY NOT NAMED	coord: 2..208 score: 2.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G016960	Cucsa.254240	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G016960	Cla021635	Watermelon (97103) v1	cmawmB242
CmaCh14G016960	Csa3G147780	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G016960	MELO3C006539	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G016960	CSPI03G13230	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G016960	CmoCh14G017410	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G016960	Lsi05G014280	Bottle gourd (USVL1VR-Ls)	cmalsiB250
CmaCh14G016960	Cp4.1LG03g10890	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G016960	Cp4.1LG08g04270	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G016960	MELO3C006539.2	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G016960	CsaV3_3G013420	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G016960	Bhi01G000599	Wax gourd	cmawgoB0328
CmaCh14G016960	CsGy3G013350	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G016960	Carg23805	Silver-seed gourd	carcmaB0307
CmaCh14G016960	Carg17412	Silver-seed gourd	carcmaB0847

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G016960	CmaCh00G003870	Cucurbita maxima (Rimu)	cmacmaB009
CmaCh14G016960	CmaCh06G014170	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G016960	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh14G016960	Cucurbita moschata (Rifu)	cmacmoB251
CmaCh14G016960	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G016960	Cucurbita moschata (Rifu)	cmacmoB279
CmaCh14G016960	Watermelon (Charleston Gray)	cmawcgB215
CmaCh14G016960	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G016960	Watermelon (97103) v1	cmawmB250
CmaCh14G016960	Bottle gourd (USVL1VR-Ls)	cmalsiB225
CmaCh14G016960	Silver-seed gourd	carcmaB0090
CmaCh14G016960	Silver-seed gourd	carcmaB0453
CmaCh14G016960	Watermelon (97103) v2	cmawmbB263
CmaCh14G016960	Watermelon (97103) v2	cmawmbB266
CmaCh14G016960	Watermelon (97103) v2	cmawmbB280
CmaCh14G016960	Wax gourd	cmawgoB0312