CsGy3G013350 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G013350
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Photosystem I reaction center subunit II, chloroplastic
Location	Chr3 : 9971811 .. 9972434 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCACCGGCATTTCCATTCCATGGAAGCAATCCTCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGGCCGCCTCCTCTTCCCGCTCTTTCAAGGTCTCCGCCGAAGCCGAGACTTCTGTCGAGGCTCCGGCCGGATTCTCCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCGATCTTCGCGGGCAGCACCGGAGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCGACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATCGGGAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCACCGGCATTTCCATTCCATGGAAGCAATCCTCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGGCCGCCTCCTCTTCCCGCTCTTTCAAGGTCTCCGCCGAAGCCGAGACTTCTGTCGAGGCTCCGGCCGGATTCTCCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCGATCTTCGCGGGCAGCACCGGAGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCGACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATCGGGAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCACCGGCATTTCCATTCCATGGAAGCAATCCTCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGGCCGCCTCCTCTTCCCGCTCTTTCAAGGTCTCCGCCGAAGCCGAGACTTCTGTCGAGGCTCCGGCCGGATTCTCCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCGATCTTCGCGGGCAGCACCGGAGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCGACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATCGGGAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

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BLAST of CsGy3G013350 vs. NCBI nr
Match: XP_004134141.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus] >P32869.1 RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=PS I subunit 5; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor >KGN56995.1 hypothetical protein Csa_3G147780 [Cucumis sativus] >prf||1710320A photosystem I 20kD protein)

HSP 1 Score: 407.9 bits (1047), Expect = 2.0e-110
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CsGy3G013350 vs. NCBI nr
Match: XP_008438687.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 394.0 bits (1011), Expect = 3.0e-106
Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQATLFTPSLSTPKS+ ISIPWKQS TLSFLTSKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CsGy3G013350 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 375.9 bits (964), Expect = 8.6e-101
Identity = 191/208 (91.83%), Postives = 198/208 (95.19%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE-TS 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE  +
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of CsGy3G013350 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.6 bits (963), Expect = 1.1e-100
Identity = 191/209 (91.39%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE--T 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE   
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           + EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209

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BLAST of CsGy3G013350 vs. NCBI nr
Match: XP_022979397.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima])

HSP 1 Score: 374.0 bits (959), Expect = 3.3e-100
Identity = 190/208 (91.35%), Postives = 197/208 (94.71%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE-TS 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTL F+ SKP +K A+SSR  KVSAEAE  +
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of CsGy3G013350 vs. TAIR10
Match: AT1G03130.1 (photosystem I subunit D-2)

HSP 1 Score: 287.7 bits (735), Expect = 5.6e-78
Identity = 155/210 (73.81%), Postives = 168/210 (80.00%), Query Frame = 0


Query: 3   MATQAT-LFTPSLSTPKSTGISIPWKQSS----TLSFLTSKPHLKAASSSRSFKVSAEAE 62
           MATQA  +F+P+++T  S    +    SS    +LSF       K A  +   + S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF------TKTAIRAEKTESSSAAP 60

Query: 63  TSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
              EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of CsGy3G013350 vs. TAIR10
Match: AT4G02770.1 (photosystem I subunit D-1)

HSP 1 Score: 287.3 bits (734), Expect = 7.3e-78
Identity = 155/211 (73.46%), Postives = 172/211 (81.52%), Query Frame = 0


Query: 3   MATQAT-LFTPSLSTPKSTGISIPWKQSST-----LSFLTSKPHLKAASSSRSFKVSAEA 62
           MATQA  +F  +++T  ++G+      S+T     LSF  +K  ++A  +  S   +A A
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSF--TKTAIRAEKTDSS-AAAAAA 60

Query: 63  ETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 122
             + EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 123 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 182
           AIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 183 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of CsGy3G013350 vs. Swiss-Prot
Match: sp|P32869|PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 6.7e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CsGy3G013350 vs. Swiss-Prot
Match: sp|P12372|PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 3.1e-86
Identity = 168/211 (79.62%), Postives = 178/211 (84.36%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAE----A 60
           MAMATQA+LFTP LS PKST  + PWKQ S +SF T K      S +R  +  AE    A
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQ-SLVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  ETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
                APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]

BLAST of CsGy3G013350 vs. Swiss-Prot
Match: sp|P29302|PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.0e-84
Identity = 165/209 (78.95%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAE--AET 60
           MAMATQA+LFTP+LS PKS   S PWKQS  L+  + K      S+ R  +  AE  A  
Sbjct: 1   MAMATQASLFTPALSAPKS---SAPWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]

BLAST of CsGy3G013350 vs. Swiss-Prot
Match: sp|P12353|PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 307.0 bits (785), Expect = 1.6e-82
Identity = 166/217 (76.50%), Postives = 180/217 (82.95%), Query Frame = 0


Query: 1   MAMATQATLFTP---SLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE 60
           MAMATQATLF+P   S + P  T ++  +KQ S ++F  SKP    AS   S + +A AE
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTF-ASKP----ASRHHSIRAAAAAE 60

Query: 61  -------TSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120
                   + EAP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE
Sbjct: 61  GKXXXXTETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120

Query: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVY 180
           MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVY
Sbjct: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVY 180

Query: 181 PEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           PEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]

BLAST of CsGy3G013350 vs. Swiss-Prot
Match: sp|Q9SA56|PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.0e-76
Identity = 155/210 (73.81%), Postives = 168/210 (80.00%), Query Frame = 0


Query: 3   MATQAT-LFTPSLSTPKSTGISIPWKQSS----TLSFLTSKPHLKAASSSRSFKVSAEAE 62
           MATQA  +F+P+++T  S    +    SS    +LSF       K A  +   + S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF------TKTAIRAEKTESSSAAP 60

Query: 63  TSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
              EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of CsGy3G013350 vs. TrEMBL
Match: tr|A0A0A0L4Y6|A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 1.3e-110
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CsGy3G013350 vs. TrEMBL
Match: tr|A0A1S3AXN9|A0A1S3AXN9_CUCME (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.0e-106
Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQATLFTPSLSTPKS+ ISIPWKQS TLSFLTSKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CsGy3G013350 vs. TrEMBL
Match: tr|B9RSQ3|B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_0677760 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.1e-88
Identity = 174/209 (83.25%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MAMATQATLFTP-SLSTPKSTGISI-PWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAET 60
           MAMATQA+LFTP +LSTPKS+  +I PWKQSS LS  T+KP  K + + ++ K +A    
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPR-KYSIAQKTIKAAAAEGK 60

Query: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           + EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of CsGy3G013350 vs. TrEMBL
Match: tr|A0A2I4GSF6|A0A2I4GSF6_9ROSI (photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109010445 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 3.2e-88
Identity = 176/212 (83.02%), Postives = 188/212 (88.68%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKS-TGISIPWKQSSTLSFLTSKPHLKAASSSRSFKV----SAE 60
           MAMATQA+LFTP LS  KS   +++PWKQSSTLSF TS   LK + S R+ K     +AE
Sbjct: 1   MAMATQASLFTPPLSASKSGDRVTVPWKQSSTLSF-TSPKQLKFSVSQRTIKAAAGEAAE 60

Query: 61  AETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
           A T  EAP GF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGG
Sbjct: 61  APTK-EAPVGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGG 120

Query: 121 AAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           PGR+GVG NFRSIGKNV+PIEVKFTGKQVYDL
Sbjct: 181 PGRQGVGVNFRSIGKNVNPIEVKFTGKQVYDL 210

[Close]

BLAST of CsGy3G013350 vs. TrEMBL
Match: tr|A0A251QR03|A0A251QR03_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G011500 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 5.5e-88
Identity = 170/214 (79.44%), Postives = 189/214 (88.32%), Query Frame = 0


Query: 1   MAMATQATLFTPSLSTPKST--GISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAET 60
           MAMATQATLFTP+ S PK++    ++PWKQS + SF+  KP LK +S++R+ +++A AE 
Sbjct: 1   MAMATQATLFTPTPSAPKTSVERSTVPWKQSVSSSFMAPKP-LKLSSTTRTMRINAAAEE 60

Query: 61  SV-----EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120
                  EAP GF+PPELDP+TPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPT
Sbjct: 61  KTVAPPKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPT 120

Query: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180
           GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180

Query: 181 VNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VNPGR+GVGQNFRSIGKNV+PIEVKFTGKQVYD+
Sbjct: 181 VNPGRQGVGQNFRSIGKNVNPIEVKFTGKQVYDI 213

The following BLAST results are available for this feature:

BLAST of CsGy3G013350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134141.1	2.0e-110	100.00	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati...	[more]
XP_008438687.1	3.0e-106	96.14	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo...	[more]
XP_022955930.1	8.6e-101	91.83	photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]	[more]
XP_023528925.1	1.1e-100	91.39	photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022979397.1	3.3e-100	91.35	photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima]	[more]

BLAST of CsGy3G013350 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03130.1	5.6e-78	73.81	photosystem I subunit D-2	[more]
AT4G02770.1	7.3e-78	73.46	photosystem I subunit D-1	[more]

BLAST of CsGy3G013350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P32869\|PSAD_CUCSA	6.7e-113	100.00	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
sp\|P12372\|PSAD_SOLLC	3.1e-86	79.62	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
sp\|P29302\|PSAD_NICSY	1.0e-84	78.95	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
sp\|P12353\|PSAD_SPIOL	1.6e-82	76.50	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
sp\|Q9SA56\|PSAD2_ARATH	1.0e-76	73.81	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CsGy3G013350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4Y6\|A0A0A0L4Y6_CUCSA	1.3e-110	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1	[more]
tr\|A0A1S3AXN9\|A0A1S3AXN9_CUCME	2.0e-106	96.14	photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|B9RSQ3\|B9RSQ3_RICCO	1.1e-88	83.25	Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus commu...	[more]
tr\|A0A2I4GSF6\|A0A2I4GSF6_9ROSI	3.2e-88	83.02	photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX...	[more]
tr\|A0A251QR03\|A0A251QR03_PRUPE	5.5e-88	79.44	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G011500 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **INTERPRO**
Term	Definition
IPR036579	PsaD_sf
IPR003685	PsaD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G013350.1	CsGy3G013350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 75..205 e-value: 7.1E-68 score: 226.3
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	FAMILY NOT NAMED	coord: 1..207
None	No IPR available	GENE3D	G3DSA:3.30.1470.10		coord: 65..207 e-value: 1.5E-78 score: 263.1
None	No IPR available	PANTHER	PTHR31982:SF4	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..207
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	SSF64234	Photosystem I subunit PsaD	coord: 72..206

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G013350	Cla021635	Watermelon (97103) v1	cgybwmB217
CsGy3G013350	Csa3G147780	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G013350	MELO3C006539	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G013350	CSPI03G13230	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G013350	CmaCh00G003870	Cucurbita maxima (Rimu)	cgybcmaB284
CsGy3G013350	CmaCh14G016960	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G013350	CmaCh06G014170	Cucurbita maxima (Rimu)	cgybcmaB427
CsGy3G013350	CmoCh14G017410	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G013350	Lsi05G014280	Bottle gourd (USVL1VR-Ls)	cgyblsiB184
CsGy3G013350	Cp4.1LG03g10890	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G013350	Cp4.1LG08g04270	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G013350	MELO3C006539.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G013350	CsaV3_3G013420	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G013350	Cla97C05G086450	Watermelon (97103) v2	cgybwmbB196
CsGy3G013350	Bhi01G000599	Wax gourd	cgybwgoB257
CsGy3G013350	Carg17412	Silver-seed gourd	carcgybB0605
CsGy3G013350	Carg23805	Silver-seed gourd	carcgybB0239

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G013350	Cucurbita maxima (Rimu)	cgybcmaB345
CsGy3G013350	Cucurbita maxima (Rimu)	cgybcmaB349
CsGy3G013350	Cucurbita maxima (Rimu)	cgybcmaB454
CsGy3G013350	Cucurbita moschata (Rifu)	cgybcmoB322
CsGy3G013350	Cucurbita moschata (Rifu)	cgybcmoB317
CsGy3G013350	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G013350	Cucurbita moschata (Rifu)	cgybcmoB421
CsGy3G013350	Cucurbita pepo (Zucchini)	cgybcpeB310
CsGy3G013350	Cucurbita pepo (Zucchini)	cgybcpeB354
CsGy3G013350	Bottle gourd (USVL1VR-Ls)	cgyblsiB136
CsGy3G013350	Bottle gourd (USVL1VR-Ls)	cgyblsiB157
CsGy3G013350	Watermelon (Charleston Gray)	cgybwcgB169
CsGy3G013350	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G013350	Watermelon (Charleston Gray)	cgybwcgB230
CsGy3G013350	Watermelon (97103) v1	cgybwmB179
CsGy3G013350	Watermelon (97103) v1	cgybwmB262
CsGy3G013350	Silver-seed gourd	carcgybB0071
CsGy3G013350	Silver-seed gourd	carcgybB0333
CsGy3G013350	Watermelon (97103) v2	cgybwmbB222
CsGy3G013350	Watermelon (97103) v2	cgybwmbB248
CsGy3G013350	Wax gourd	cgybwgoB239