Carg23805 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23805
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem I reaction center subunit II like
Location	Cucurbita_argyrosperma_scaffold_324 : 116897 .. 117526 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCGCCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAGTCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATCTGTAA

mRNA sequence

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCGCCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAGTCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATCTGTAA

Coding sequence (CDS)

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCGCCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAGTCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATCTGTAA

Protein sequence

MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

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BLAST of Carg23805 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.0 bits (1042), Expect = 7.8e-110
Identity = 208/209 (99.52%), Postives = 208/209 (99.52%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMAAQATLFTPSLSTPKS AVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209

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BLAST of Carg23805 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 4.3e-108
Identity = 207/209 (99.04%), Postives = 207/209 (99.04%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMAAQATLFTPSLSTPKS AVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAE AA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAE-AA 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of Carg23805 vs. NCBI nr
Match: XP_022979397.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima])

HSP 1 Score: 398.3 bits (1022), Expect = 1.6e-107
Identity = 206/209 (98.56%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMAAQATLFTPSLSTPKS AVTIPWKQSSTL FINSKPLIKPAASSRIVKVSAEAE AA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAE-AA 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of Carg23805 vs. NCBI nr
Match: XP_008438687.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 375.2 bits (962), Expect = 1.5e-100
Identity = 191/209 (91.39%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKS+A++IPWKQS TLSF+ SKP +K A+SSR +KVSAEAE  A
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE--A 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           A EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  AVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Carg23805 vs. NCBI nr
Match: XP_004134141.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus] >P32869.1 RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=PS I subunit 5; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor >KGN56995.1 hypothetical protein Csa_3G147780 [Cucumis sativus] >prf||1710320A photosystem I 20kD protein)

HSP 1 Score: 372.9 bits (956), Expect = 7.3e-100
Identity = 190/209 (90.91%), Postives = 197/209 (94.26%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKS  ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE--T 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           + EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Carg23805 vs. TAIR10
Match: AT1G03130.1 (photosystem I subunit D-2)

HSP 1 Score: 288.5 bits (737), Expect = 3.3e-78
Identity = 153/208 (73.56%), Postives = 166/208 (79.81%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAA 62
           MA QA  +F+P+++T  SA   +    SS       K L     + R  K  + + A A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSH----RPKSLSFTKTAIRAEKTESSSAAPAV 60

Query: 63  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Carg23805 vs. TAIR10
Match: AT4G02770.1 (photosystem I subunit D-1)

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-76
Identity = 155/209 (74.16%), Postives = 166/209 (79.43%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAA 62
           MA QA  +F  +++T  ++ V       ST     S    K A  +     SA A AA A
Sbjct: 1   MATQAAGIFNSAITTAATSGVK-KLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPA 60

Query: 63  T-EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 122
           T EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAI 120

Query: 123 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 182
           MR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGR 180

Query: 183 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 EGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of Carg23805 vs. Swiss-Prot
Match: sp|P32869|PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 2.4e-102
Identity = 190/209 (90.91%), Postives = 197/209 (94.26%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKS  ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE--T 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           + EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Carg23805 vs. Swiss-Prot
Match: sp|P12372|PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.7e-87
Identity = 172/212 (81.13%), Postives = 182/212 (85.85%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP LS PKS   T PWKQ S +SF   K L    + +R ++  AE EA A
Sbjct: 1   MAMATQASLFTPPLSVPKS--TTAPWKQ-SLVSFSTPKQLKSTVSVTRPIRAMAE-EAPA 60

Query: 61  ATE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
           ATE   APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG
Sbjct: 61  ATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120

Query: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           PGREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 PGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]

BLAST of Carg23805 vs. Swiss-Prot
Match: sp|P29302|PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.5e-85
Identity = 163/209 (77.99%), Postives = 178/209 (85.17%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS PKS+A   PWKQS  L+  + K L    ++ R ++  AE  A  
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]

BLAST of Carg23805 vs. Swiss-Prot
Match: sp|P12353|PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 303.5 bits (776), Expect = 1.8e-81
Identity = 161/217 (74.19%), Postives = 177/217 (81.57%), Query Frame = 0


Query: 1   MAMAAQATLFTP---SLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAE 60
           MAMA QATLF+P   S + P    +T  +KQ S ++F +     KPA+    ++ +A AE
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-----KPASRHHSIRAAAAAE 60

Query: 61  A-----AAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120
                     EAP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE
Sbjct: 61  GKXXXXTETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120

Query: 121 MPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVY 180
           MPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVY
Sbjct: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVY 180

Query: 181 PEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           PEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]

BLAST of Carg23805 vs. Swiss-Prot
Match: sp|Q9SA56|PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.9e-77
Identity = 153/208 (73.56%), Postives = 166/208 (79.81%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAA 62
           MA QA  +F+P+++T  SA   +    SS       K L     + R  K  + + A A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSH----RPKSLSFTKTAIRAEKTESSSAAPAV 60

Query: 63  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Carg23805 vs. TrEMBL
Match: tr|A0A1S3AXN9|A0A1S3AXN9_CUCME (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 9.8e-101
Identity = 191/209 (91.39%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKS+A++IPWKQS TLSF+ SKP +K A+SSR +KVSAEAE  A
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE--A 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           A EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  AVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Carg23805 vs. TrEMBL
Match: tr|A0A0A0L4Y6|A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 4.9e-100
Identity = 190/209 (90.91%), Postives = 197/209 (94.26%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKS  ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE--T 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           + EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Carg23805 vs. TrEMBL
Match: tr|A0A2I4GSF6|A0A2I4GSF6_9ROSI (photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109010445 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 3.0e-89
Identity = 177/211 (83.89%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSA-AVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSA-EAEA 60
           MAMA QA+LFTP LS  KS   VT+PWKQSSTLSF + K L K + S R +K +A EA  
Sbjct: 1   MAMATQASLFTPPLSASKSGDRVTVPWKQSSTLSFTSPKQL-KFSVSQRTIKAAAGEAAE 60

Query: 61  AAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
           A   EAP GF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGA
Sbjct: 61  APTKEAPVGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GR+GVG NFRSIGKNV+PIEVKFTGKQVYDL
Sbjct: 181 GRQGVGVNFRSIGKNVNPIEVKFTGKQVYDL 210

[Close]

BLAST of Carg23805 vs. TrEMBL
Match: tr|A0A2K3MN92|A0A2K3MN92_TRIPR (Photosystem I reaction center subunit II chloroplastic-like OS=Trifolium pratense OX=57577 GN=L195_g015392 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 3.3e-88
Identity = 176/220 (80.00%), Postives = 187/220 (85.00%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSAAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEA---- 60
           MAMA QA+LFTP LSTPK      PWKQ STLSFI+ KP+     S +I K+SA A    
Sbjct: 1   MAMATQASLFTPPLSTPK------PWKQPSTLSFISLKPIKFTTISPKITKISAAADGKA 60

Query: 61  ---EAAAATE----APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQ 120
              EAA AT+    AP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQ
Sbjct: 61  EPEEAAVATKEEKTAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQ 120

Query: 121 IFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKD 180
           IFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKD
Sbjct: 121 IFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKD 180

Query: 181 GVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GVYPEKVNPGR+GVGQNFRSIGKNVSPIEVKFTGKQ YD+
Sbjct: 181 GVYPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDV 214

[Close]

BLAST of Carg23805 vs. TrEMBL
Match: tr|A0A1U8B8T4|A0A1U8B8T4_NELNU (photosystem I reaction center subunit II, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104611929 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 3.6e-87
Identity = 174/213 (81.69%), Postives = 183/213 (85.92%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSA-AVTIPWKQSST-LSFINSKPLIKPAASSRIVKVSAE--A 60
           MAMA QA LFTP+LS PKS     +PWK SST LSFI+ +PL    A   I   +A+   
Sbjct: 1   MAMATQAALFTPTLSAPKSGNRALVPWKPSSTSLSFISPRPLNLSVAQRTIRAAAADEKT 60

Query: 61  EAAAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
           EA  A EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG
Sbjct: 61  EAPPAAEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120

Query: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           N GR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 NAGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 213

The following BLAST results are available for this feature:

BLAST of Carg23805 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528925.1	7.8e-110	99.52	photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022955930.1	4.3e-108	99.04	photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]	[more]
XP_022979397.1	1.6e-107	98.56	photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima]	[more]
XP_008438687.1	1.5e-100	91.39	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo...	[more]
XP_004134141.1	7.3e-100	90.91	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati...	[more]

BLAST of Carg23805 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03130.1	3.3e-78	73.56	photosystem I subunit D-2	[more]
AT4G02770.1	1.4e-76	74.16	photosystem I subunit D-1	[more]

BLAST of Carg23805 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P32869\|PSAD_CUCSA	2.4e-102	90.91	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
sp\|P12372\|PSAD_SOLLC	3.7e-87	81.13	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
sp\|P29302\|PSAD_NICSY	3.5e-85	77.99	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
sp\|P12353\|PSAD_SPIOL	1.8e-81	74.19	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
sp\|Q9SA56\|PSAD2_ARATH	5.9e-77	73.56	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Carg23805 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXN9\|A0A1S3AXN9_CUCME	9.8e-101	91.39	photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0L4Y6\|A0A0A0L4Y6_CUCSA	4.9e-100	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1	[more]
tr\|A0A2I4GSF6\|A0A2I4GSF6_9ROSI	3.0e-89	83.89	photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX...	[more]
tr\|A0A2K3MN92\|A0A2K3MN92_TRIPR	3.3e-88	80.00	Photosystem I reaction center subunit II chloroplastic-like OS=Trifolium pratens...	[more]
tr\|A0A1U8B8T4\|A0A1U8B8T4_NELNU	3.6e-87	81.69	photosystem I reaction center subunit II, chloroplastic OS=Nelumbo nucifera OX=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR036579	PsaD_sf
IPR003685	PsaD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23805-RA	Carg23805-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.1470.10		coord: 67..209 e-value: 1.8E-78 score: 262.8
None	No IPR available	PANTHER	PTHR31982:SF4	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..209
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 77..207 e-value: 6.5E-68 score: 226.4
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	FAMILY NOT NAMED	coord: 1..209
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	SSF64234	Photosystem I subunit PsaD	coord: 74..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23805	Cla021635	Watermelon (97103) v1	carwmB0211
Carg23805	Csa3G147780	Cucumber (Chinese Long) v2	carcuB0250
Carg23805	MELO3C006539	Melon (DHL92) v3.5.1	carmeB0228
Carg23805	CSPI03G13230	Wild cucumber (PI 183967)	carcpiB0255
Carg23805	Cucsa.254240	Cucumber (Gy14) v1	carcgyB0265
Carg23805	CmaCh06G014170	Cucurbita maxima (Rimu)	carcmaB0309
Carg23805	CmaCh14G016960	Cucurbita maxima (Rimu)	carcmaB0307
Carg23805	CmaCh00G003870	Cucurbita maxima (Rimu)	carcmaB0306
Carg23805	CmoCh14G017410	Cucurbita moschata (Rifu)	carcmoB0311
Carg23805	Lsi05G014280	Bottle gourd (USVL1VR-Ls)	carlsiB200
Carg23805	Cp4.1LG08g04270	Cucurbita pepo (Zucchini)	carcpeB0318
Carg23805	Cp4.1LG03g10890	Cucurbita pepo (Zucchini)	carcpeB0317
Carg23805	CsGy3G013350	Cucumber (Gy14) v2	carcgybB0239
Carg23805	MELO3C006539.2	Melon (DHL92) v3.6.1	carmedB0235
Carg23805	CsaV3_3G013420	Cucumber (Chinese Long) v3	carcucB0254
Carg23805	Bhi01G000599	Wax gourd	carwgoB0277

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23805	Carg17412	Silver-seed gourd	carcarB258

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23805	Watermelon (Charleston Gray)	carwcgB0216
Carg23805	Watermelon (97103) v2	carwmbB0225