MELO3C006539.2 (gene) Melon (DHL92) v3.6.1
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATCCTCCATTCCCAATCCACCATTTCCAATCCTCTTCCTCTGCTCCAAATCCCATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCTCCGCCATTTCCATTCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGACCGCCTCCTCTTCCCGCTCTCTCAAGGTCTCCGCCGAAGCCGAGGCTGCTGTCGAGGCTCCGGCCGGATTCACCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCAATCTTCGCGGGCAGCACCGGGGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCCACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGAAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAAGAAATTTAATCTCTTATGTTCTTATATGCTCTTTTTTTTATGATGTCAATTATGAATCATACTCTCTTATATTAATTCTTATAAGTGTCTATGCTCTTGATCTTCTGTTCCGTTTTTGTTTGGTGGAATTATGGTTTGTGTGTTAGATGTAAATTTGTGGGTTGTTTTTAGTGATCATGCTACACAATTCTGTGATGAAATTTAATTCTCTTTTTGTGTATTTGGTTTGCTTATGAGTTAAATTGGGTTATTTTGTTTGATTTC AATCCTCCATTCCCAATCCACCATTTCCAATCCTCTTCCTCTGCTCCAAATCCCATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCTCCGCCATTTCCATTCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGACCGCCTCCTCTTCCCGCTCTCTCAAGGTCTCCGCCGAAGCCGAGGCTGCTGTCGAGGCTCCGGCCGGATTCACCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCAATCTTCGCGGGCAGCACCGGGGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCCACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGAAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAAGAAATTTAATCTCTTATGTTCTTATATGCTCTTTTTTTTATGATGTCAATTATGAATCATACTCTCTTATATTAATTCTTATAAGTGTCTATGCTCTTGATCTTCTGTTCCGTTTTTGTTTGGTGGAATTATGGTTTGTGTGTTAGATGTAAATTTGTGGGTTGTTTTTAGTGATCATGCTACACAATTCTGTGATGAAATTTAATTCTCTTTTTGTGTATTTGGTTTGCTTATGAGTTAAATTGGGTTATTTTGTTTGATTTC ATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCTCCGCCATTTCCATTCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGACCGCCTCCTCTTCCCGCTCTCTCAAGGTCTCCGCCGAAGCCGAGGCTGCTGTCGAGGCTCCGGCCGGATTCACCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCAATCTTCGCGGGCAGCACCGGGGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCCACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGAAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAA MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL
BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_008438687.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo]) HSP 1 Score: 407.5 bits (1046), Expect = 2.7e-110 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_004134141.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus] >P32869.1 RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=PS I subunit 5; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor >KGN56995.1 hypothetical protein Csa_3G147780 [Cucumis sativus] >prf||1710320A photosystem I 20kD protein) HSP 1 Score: 394.0 bits (1011), Expect = 3.0e-106 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0
BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]) HSP 1 Score: 376.3 bits (965), Expect = 6.6e-101 Identity = 191/208 (91.83%), Postives = 200/208 (96.15%), Query Frame = 0
BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 375.9 bits (964), Expect = 8.6e-101 Identity = 191/209 (91.39%), Postives = 200/209 (95.69%), Query Frame = 0
BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_022979397.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima]) HSP 1 Score: 374.4 bits (960), Expect = 2.5e-100 Identity = 190/208 (91.35%), Postives = 199/208 (95.67%), Query Frame = 0
BLAST of MELO3C006539.2 vs. TAIR10
Match: AT1G03130.1 (photosystem I subunit D-2) HSP 1 Score: 293.5 bits (750), Expect = 1.0e-79 Identity = 157/210 (74.76%), Postives = 170/210 (80.95%), Query Frame = 0
BLAST of MELO3C006539.2 vs. TAIR10
Match: AT4G02770.1 (photosystem I subunit D-1) HSP 1 Score: 287.7 bits (735), Expect = 5.6e-78 Identity = 154/211 (72.99%), Postives = 168/211 (79.62%), Query Frame = 0
BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|P32869|PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 1.0e-108 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0
BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|P12372|PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 1.3e-87 Identity = 172/211 (81.52%), Postives = 183/211 (86.73%), Query Frame = 0
BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|P29302|PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 1.8e-86 Identity = 168/209 (80.38%), Postives = 179/209 (85.65%), Query Frame = 0
BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|P12353|PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2) HSP 1 Score: 306.2 bits (783), Expect = 2.7e-82 Identity = 165/217 (76.04%), Postives = 179/217 (82.49%), Query Frame = 0
BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|Q9SA56|PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 1.8e-78 Identity = 157/210 (74.76%), Postives = 170/210 (80.95%), Query Frame = 0
BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|A0A1S3AXN9|A0A1S3AXN9_CUCME (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=4 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 1.8e-110 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|A0A0A0L4Y6|A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 2.0e-106 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0
BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|A0A251QR03|A0A251QR03_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G011500 PE=4 SV=1) HSP 1 Score: 336.3 bits (861), Expect = 5.0e-89 Identity = 172/214 (80.37%), Postives = 190/214 (88.79%), Query Frame = 0
BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|B9RSQ3|B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_0677760 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 8.5e-89 Identity = 175/209 (83.73%), Postives = 187/209 (89.47%), Query Frame = 0
BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|A0A2I4GSF6|A0A2I4GSF6_9ROSI (photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109010445 PE=4 SV=1) HSP 1 Score: 334.7 bits (857), Expect = 1.5e-88 Identity = 176/211 (83.41%), Postives = 188/211 (89.10%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |