MELO3C006539.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C006539.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionphotosystem I reaction center subunit II, chloroplastic
Locationchr06 : 4013619 .. 4014560 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCTCCATTCCCAATCCACCATTTCCAATCCTCTTCCTCTGCTCCAAATCCCATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCTCCGCCATTTCCATTCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGACCGCCTCCTCTTCCCGCTCTCTCAAGGTCTCCGCCGAAGCCGAGGCTGCTGTCGAGGCTCCGGCCGGATTCACCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCAATCTTCGCGGGCAGCACCGGGGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCCACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGAAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAAGAAATTTAATCTCTTATGTTCTTATATGCTCTTTTTTTTATGATGTCAATTATGAATCATACTCTCTTATATTAATTCTTATAAGTGTCTATGCTCTTGATCTTCTGTTCCGTTTTTGTTTGGTGGAATTATGGTTTGTGTGTTAGATGTAAATTTGTGGGTTGTTTTTAGTGATCATGCTACACAATTCTGTGATGAAATTTAATTCTCTTTTTGTGTATTTGGTTTGCTTATGAGTTAAATTGGGTTATTTTGTTTGATTTC

mRNA sequence

AATCCTCCATTCCCAATCCACCATTTCCAATCCTCTTCCTCTGCTCCAAATCCCATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCTCCGCCATTTCCATTCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGACCGCCTCCTCTTCCCGCTCTCTCAAGGTCTCCGCCGAAGCCGAGGCTGCTGTCGAGGCTCCGGCCGGATTCACCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCAATCTTCGCGGGCAGCACCGGGGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCCACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGAAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAAGAAATTTAATCTCTTATGTTCTTATATGCTCTTTTTTTTATGATGTCAATTATGAATCATACTCTCTTATATTAATTCTTATAAGTGTCTATGCTCTTGATCTTCTGTTCCGTTTTTGTTTGGTGGAATTATGGTTTGTGTGTTAGATGTAAATTTGTGGGTTGTTTTTAGTGATCATGCTACACAATTCTGTGATGAAATTTAATTCTCTTTTTGTGTATTTGGTTTGCTTATGAGTTAAATTGGGTTATTTTGTTTGATTTC

Coding sequence (CDS)

ATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCTCCGCCATTTCCATTCCATGGAAGCAATCCCCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGACCGCCTCCTCTTCCCGCTCTCTCAAGGTCTCCGCCGAAGCCGAGGCTGCTGTCGAGGCTCCGGCCGGATTCACCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCAATCTTCGCGGGCAGCACCGGGGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCCACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGAAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL
BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_008438687.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 407.5 bits (1046), Expect = 2.7e-110
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60
           MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_004134141.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus] >P32869.1 RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=PS I subunit 5; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor >KGN56995.1 hypothetical protein Csa_3G147780 [Cucumis sativus] >prf||1710320A photosystem I 20kD protein)

HSP 1 Score: 394.0 bits (1011), Expect = 3.0e-106
Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60
           MAMATQATLFTPSLSTPKS+ ISIPWKQS TLSFLTSKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 376.3 bits (965), Expect = 6.6e-101
Identity = 191/208 (91.83%), Postives = 200/208 (96.15%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE-AA 60
           MAMA QATLFTPSLSTPKS+A++IPWKQS TLSF+ SKP +K A+SSR +KVSAEAE AA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  VEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 8.6e-101
Identity = 191/209 (91.39%), Postives = 200/209 (95.69%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE--A 60
           MAMA QATLFTPSLSTPKS+A++IPWKQS TLSF+ SKP +K A+SSR +KVSAEAE  A
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  AVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           A EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209

BLAST of MELO3C006539.2 vs. NCBI nr
Match: XP_022979397.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima])

HSP 1 Score: 374.4 bits (960), Expect = 2.5e-100
Identity = 190/208 (91.35%), Postives = 199/208 (95.67%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE-AA 60
           MAMA QATLFTPSLSTPKS+A++IPWKQS TL F+ SKP +K A+SSR +KVSAEAE AA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  VEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

BLAST of MELO3C006539.2 vs. TAIR10
Match: AT1G03130.1 (photosystem I subunit D-2)

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-79
Identity = 157/210 (74.76%), Postives = 170/210 (80.95%), Query Frame = 0

Query: 3   MATQAT-LFTPSLSTPKSSAISIPWKQS----PTLSFLTSKPHLKTASSSRSLKVSAEAE 62
           MATQA  +F+P+++T  S+   +    S     +LSF       KTA  +   + S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF------TKTAIRAEKTESSSAAP 60

Query: 63  AAVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GFTPP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

BLAST of MELO3C006539.2 vs. TAIR10
Match: AT4G02770.1 (photosystem I subunit D-1)

HSP 1 Score: 287.7 bits (735), Expect = 5.6e-78
Identity = 154/211 (72.99%), Postives = 168/211 (79.62%), Query Frame = 0

Query: 3   MATQAT-LFTPSLSTPKSSAIS-----IPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEA 62
           MATQA  +F  +++T  +S +          +  +LSF  +    +   SS +   +A A
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAA---AAAA 60

Query: 63  EAAVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 122
            A  EAP GFTPP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 123 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 182
           AIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 183 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|P32869|PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.0e-108
Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60
           MAMATQATLFTPSLSTPKS+ ISIPWKQS TLSFLTSKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|P12372|PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.3e-87
Identity = 172/211 (81.52%), Postives = 183/211 (86.73%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSA-EAEAA 60
           MAMATQA+LFTP LS PKS+  + PWKQS  +SF T K    T S +R ++  A EA AA
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  VE---APAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
            E   APAGFTPP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|P29302|PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.8e-86
Identity = 168/209 (80.38%), Postives = 179/209 (85.65%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAA- 60
           MAMATQA+LFTP+LS PKSSA   PWKQS  L+  + K    T S+ R ++  AE  A  
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  -VEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GFTPP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|P12353|PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 306.2 bits (783), Expect = 2.7e-82
Identity = 165/217 (76.04%), Postives = 179/217 (82.49%), Query Frame = 0

Query: 1   MAMATQATLFTP---SLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE 60
           MAMATQATLF+P   S + P  + ++  +KQ   ++F  SKP    AS   S++ +A AE
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTF-ASKP----ASRHHSIRAAAAAE 60

Query: 61  A-------AVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120
                     EAP GFTPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE
Sbjct: 61  GKXXXXTETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120

Query: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVY 180
           MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVY
Sbjct: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVY 180

Query: 181 PEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           PEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

BLAST of MELO3C006539.2 vs. Swiss-Prot
Match: sp|Q9SA56|PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.8e-78
Identity = 157/210 (74.76%), Postives = 170/210 (80.95%), Query Frame = 0

Query: 3   MATQAT-LFTPSLSTPKSSAISIPWKQS----PTLSFLTSKPHLKTASSSRSLKVSAEAE 62
           MATQA  +F+P+++T  S+   +    S     +LSF       KTA  +   + S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF------TKTAIRAEKTESSSAAP 60

Query: 63  AAVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GFTPP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|A0A1S3AXN9|A0A1S3AXN9_CUCME (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.8e-110
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60
           MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|A0A0A0L4Y6|A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.0e-106
Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60
           MAMATQATLFTPSLSTPKS+ ISIPWKQS TLSFLTSKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|A0A251QR03|A0A251QR03_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G011500 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 5.0e-89
Identity = 172/214 (80.37%), Postives = 190/214 (88.79%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKSSA--ISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEA 60
           MAMATQATLFTP+ S PK+S    ++PWKQS + SF+  KP LK +S++R+++++A AE 
Sbjct: 1   MAMATQATLFTPTPSAPKTSVERSTVPWKQSVSSSFMAPKP-LKLSSTTRTMRINAAAEE 60

Query: 61  AV-----EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120
                  EAP GFTPPELDP+TPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPT
Sbjct: 61  KTVAPPKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPT 120

Query: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180
           GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180

Query: 181 VNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VNPGR+GVGQNFRSIGKNV+PIEVKFTGKQVYD+
Sbjct: 181 VNPGRQGVGQNFRSIGKNVNPIEVKFTGKQVYDI 213

BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|B9RSQ3|B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_0677760 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 8.5e-89
Identity = 175/209 (83.73%), Postives = 187/209 (89.47%), Query Frame = 0

Query: 1   MAMATQATLFTP-SLSTPKSSAISI-PWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEA 60
           MAMATQA+LFTP +LSTPKSS  +I PWKQS  LS  T+KP  K + + +++K +A    
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPR-KYSIAQKTIKAAAAEGK 60

Query: 61  AVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GFTPPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

BLAST of MELO3C006539.2 vs. TrEMBL
Match: tr|A0A2I4GSF6|A0A2I4GSF6_9ROSI (photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109010445 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.5e-88
Identity = 176/211 (83.41%), Postives = 188/211 (89.10%), Query Frame = 0

Query: 1   MAMATQATLFTPSLSTPKS-SAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSA--EAE 60
           MAMATQA+LFTP LS  KS   +++PWKQS TLSF TS   LK + S R++K +A   AE
Sbjct: 1   MAMATQASLFTPPLSASKSGDRVTVPWKQSSTLSF-TSPKQLKFSVSQRTIKAAAGEAAE 60

Query: 61  AAV-EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
           A   EAP GFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGA
Sbjct: 61  APTKEAPVGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGA 120

Query: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GR+GVG NFRSIGKNV+PIEVKFTGKQVYDL
Sbjct: 181 GRQGVGVNFRSIGKNVNPIEVKFTGKQVYDL 210

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008438687.12.7e-110100.00PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo... [more]
XP_004134141.13.0e-10696.14PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati... [more]
XP_022955930.16.6e-10191.83photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata][more]
XP_023528925.18.6e-10191.39photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. p... [more]
XP_022979397.12.5e-10091.35photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT1G03130.11.0e-7974.76photosystem I subunit D-2[more]
AT4G02770.15.6e-7872.99photosystem I subunit D-1[more]
Match NameE-valueIdentityDescription
sp|P32869|PSAD_CUCSA1.0e-10896.14Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36... [more]
sp|P12372|PSAD_SOLLC1.3e-8781.52Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ... [more]
sp|P29302|PSAD_NICSY1.8e-8680.38Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ... [more]
sp|P12353|PSAD_SPIOL2.7e-8276.04Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=... [more]
sp|Q9SA56|PSAD2_ARATH1.8e-7874.76Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3AXN9|A0A1S3AXN9_CUCME1.8e-110100.00photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 ... [more]
tr|A0A0A0L4Y6|A0A0A0L4Y6_CUCSA2.0e-10696.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1[more]
tr|A0A251QR03|A0A251QR03_PRUPE5.0e-8980.37Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G011500 PE=4 SV=1[more]
tr|B9RSQ3|B9RSQ3_RICCO8.5e-8983.73Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus commu... [more]
tr|A0A2I4GSF6|A0A2I4GSF6_9ROSI1.5e-8883.41photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
GO:0009538photosystem I reaction center
Vocabulary: INTERPRO
TermDefinition
IPR036579PsaD_sf
IPR003685PsaD
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009522 photosystem I
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006539.2.1MELO3C006539.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003685Photosystem I PsaDPFAMPF02531PsaDcoord: 75..205
e-value: 7.1E-68
score: 226.3
IPR003685Photosystem I PsaDPANTHERPTHR31982FAMILY NOT NAMEDcoord: 1..207
NoneNo IPR availableGENE3DG3DSA:3.30.1470.10coord: 65..207
e-value: 4.6E-79
score: 264.7
NoneNo IPR availablePANTHERPTHR31982:SF4PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATEDcoord: 1..207
IPR036579Photosystem I, reaction centre subunit PsaD superfamilySUPERFAMILYSSF64234Photosystem I subunit PsaDcoord: 72..206

The following gene(s) are paralogous to this gene:

None