Carg17412 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17412
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem I reaction center subunit II like
Location	Cucurbita_argyrosperma_scaffold_092 : 503615 .. 504238 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCTCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGACTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCGACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTCAGCCCCATTGAGGTCAAGTTCACCGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCTCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGACTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCGACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTCAGCCCCATTGAGGTCAAGTTCACCGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCTCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGACTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCGACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGGAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTCAGCCCCATTGAGGTCAAGTTCACCGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

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BLAST of Carg17412 vs. NCBI nr
Match: XP_022934493.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 392.9 bits (1008), Expect = 6.8e-106
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEXXXX 60
           MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEXXXX
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEXXXX 60

Query: 61  XXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           XXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  XXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Carg17412 vs. NCBI nr
Match: XP_023539342.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.5 bits (1007), Expect = 8.9e-106
Identity = 205/207 (99.03%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEXXXX 60
           MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRL+KVSAEAE XXX
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLIKVSAEAEAXXX 60

Query: 61  XXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           XXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  XXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Carg17412 vs. NCBI nr
Match: XP_022973649.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima] >XP_022975157.1 photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 391.0 bits (1003), Expect = 2.6e-105
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEXXXX 60
           MAMAAQATLFTPSLTTPKSTATAV WKQSPTLSFLNAKPLNLASSSRLVKVSAEAEXXXX
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEXXXX 60

Query: 61  XXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           XXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  XXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Carg17412 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 369.0 bits (946), Expect = 1.0e-98
Identity = 188/208 (90.38%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPL-NLASSSRLVKVSAEAEXXX 60
           MAMAAQATLFTPSL+TPKSTA  + WKQS TLSF+N+KPL   A+SSR+VKVSAEAE   
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  XXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
               AGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of Carg17412 vs. NCBI nr
Match: XP_022979397.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima])

HSP 1 Score: 367.1 bits (941), Expect = 4.0e-98
Identity = 187/208 (89.90%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPL-NLASSSRLVKVSAEAEXXX 60
           MAMAAQATLFTPSL+TPKSTA  + WKQS TL F+N+KPL   A+SSR+VKVSAEAE   
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  XXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
               AGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of Carg17412 vs. TAIR10
Match: AT1G03130.1 (photosystem I subunit D-2)

HSP 1 Score: 280.4 bits (716), Expect = 8.9e-76
Identity = 147/210 (70.00%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKV----SAEAEX 62
           MA QA  +F+P++TT  S    +    S      + +P +L+ +   ++     S+ A  
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSS------SHRPKSLSFTKTAIRAEKTESSSAAP 60

Query: 63  XXXXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
                  GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Carg17412 vs. TAIR10
Match: AT4G02770.1 (photosystem I subunit D-1)

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-75
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 65  GFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPN 124
           GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMR+GPN
Sbjct: 66  GFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPN 125

Query: 125 LLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN 184
           LLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N
Sbjct: 126 LLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLN 185

Query: 185 FRSIGKNVSPIEVKFTGKQVYDL 208
            RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 186 MRSIGKNVSPIEVKFTGKQSYDL 208

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BLAST of Carg17412 vs. Swiss-Prot
Match: sp|P32869|PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.0e-97
Identity = 185/208 (88.94%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKP-LNLASSSRLVKVSAEAEXXX 60
           MAMA QATLFTPSL+TPKST  ++ WKQS TLSFL +KP L  ASSSR  KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE-TS 60

Query: 61  XXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
               AGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Carg17412 vs. Swiss-Prot
Match: sp|P12372|PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.2e-83
Identity = 164/211 (77.73%), Postives = 175/211 (82.94%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPL-NLASSSRLVKVSAE---AE 60
           MAMA QA+LFTP L+ PKS  T   WKQS  +SF   K L +  S +R ++  AE   A 
Sbjct: 1   MAMATQASLFTPPLSVPKS--TTAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  XXXXXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
                  AGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]

BLAST of Carg17412 vs. Swiss-Prot
Match: sp|P29302|PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.7e-81
Identity = 158/208 (75.96%), Postives = 173/208 (83.17%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSA-EAEXXX 60
           MAMA QA+LFTP+L+ PKS+A    WKQS   SF   +  +  S+ R ++  A EA    
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS-LASFSPKQLKSTVSAPRPIRAMAEEAATKE 60

Query: 61  XXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
                GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  AEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+
Sbjct: 121 REGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]

BLAST of Carg17412 vs. Swiss-Prot
Match: sp|P12353|PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 295.4 bits (755), Expect = 4.8e-79
Identity = 159/216 (73.61%), Postives = 173/216 (80.09%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTT---PKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAE- 60
           MAMA QATLF+PS  +   P  T    S+KQ   ++F  +KP   AS    ++ +A AE 
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFA-SKP---ASRHHSIRAAAAAEG 60

Query: 61  -----XXXXXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120
                        GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM
Sbjct: 61  KXXXXTETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 120

Query: 121 PTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYP 180
           PTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYP
Sbjct: 121 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYP 180

Query: 181 EKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 EKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]

BLAST of Carg17412 vs. Swiss-Prot
Match: sp|Q9SA56|PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.6e-74
Identity = 147/210 (70.00%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKV----SAEAEX 62
           MA QA  +F+P++TT  S    +    S      + +P +L+ +   ++     S+ A  
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSS------SHRPKSLSFTKTAIRAEKTESSSAAP 60

Query: 63  XXXXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
                  GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Carg17412 vs. TrEMBL
Match: tr|A0A1S3AXN9|A0A1S3AXN9_CUCME (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 3.2e-96
Identity = 185/208 (88.94%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKP-LNLASSSRLVKVSAEAEXXX 60
           MAMA QATLFTPSL+TPKS+A ++ WKQSPTLSFL +KP L  ASSSR +KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE-AA 60

Query: 61  XXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
               AGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  VEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Carg17412 vs. TrEMBL
Match: tr|A0A0A0L4Y6|A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 2.1e-95
Identity = 185/208 (88.94%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKP-LNLASSSRLVKVSAEAEXXX 60
           MAMA QATLFTPSL+TPKST  ++ WKQS TLSFL +KP L  ASSSR  KVSAEAE   
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE-TS 60

Query: 61  XXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
               AGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Carg17412 vs. TrEMBL
Match: tr|A0A1U7ZRC5|A0A1U7ZRC5_NELNU (photosystem I reaction center subunit II, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104596510 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 5.2e-86
Identity = 169/212 (79.72%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKSTATA-VSWK-QSPTLSFLNAKPLNLASSSRLVKVSA---EA 60
           MAMA QA LFTP+L+TP S   A V WK  S +LSFL+ +PLNL+ + R ++ SA   + 
Sbjct: 1   MAMATQAGLFTPTLSTPNSGNRALVPWKPSSSSLSFLSPRPLNLSLAHRTIRASAADGKT 60

Query: 61  EXXXXXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
           E        GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGG
Sbjct: 61  EAPPAEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGG 120

Query: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           PGR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 PGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 212

[Close]

BLAST of Carg17412 vs. TrEMBL
Match: tr|B9RSQ3|B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_0677760 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 8.8e-86
Identity = 170/209 (81.34%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1   MAMAAQATLFTP-SLTTPKSTATA-VSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEXX 60
           MAMA QA+LFTP +L+TPKS+  A V WKQS  LS   AKP   + + + +K +A AE  
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPRKYSIAQKTIKAAA-AEGK 60

Query: 61  XXXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
                 GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Carg17412 vs. TrEMBL
Match: tr|A0A2I4GSF6|A0A2I4GSF6_9ROSI (photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109010445 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.1e-85
Identity = 168/210 (80.00%), Postives = 178/210 (84.76%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLTTPKS-TATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSA--EAEX 60
           MAMA QA+LFTP L+  KS     V WKQS TLSF + K L  + S R +K +A   AE 
Sbjct: 1   MAMATQASLFTPPLSASKSGDRVTVPWKQSSTLSFTSPKQLKFSVSQRTIKAAAGEAAEA 60

Query: 61  XXXXXXAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
                  GF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA
Sbjct: 61  PTKEAPVGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAA 120

Query: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           R+GVG NFRSIGKNV+PIEVKFTGKQVYDL
Sbjct: 181 RQGVGVNFRSIGKNVNPIEVKFTGKQVYDL 210

The following BLAST results are available for this feature:

BLAST of Carg17412 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934493.1	6.8e-106	100.00	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita moschata...	[more]
XP_023539342.1	8.9e-106	99.03	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022973649.1	2.6e-105	99.52	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima] ...	[more]
XP_022955930.1	1.0e-98	90.38	photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]	[more]
XP_022979397.1	4.0e-98	89.90	photosystem I reaction center subunit II, chloroplastic [Cucurbita maxima]	[more]

BLAST of Carg17412 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03130.1	8.9e-76	70.00	photosystem I subunit D-2	[more]
AT4G02770.1	2.6e-75	93.01	photosystem I subunit D-1	[more]

BLAST of Carg17412 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P32869\|PSAD_CUCSA	1.0e-97	88.94	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
sp\|P12372\|PSAD_SOLLC	3.2e-83	77.73	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
sp\|P29302\|PSAD_NICSY	6.7e-81	75.96	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
sp\|P12353\|PSAD_SPIOL	4.8e-79	73.61	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
sp\|Q9SA56\|PSAD2_ARATH	1.6e-74	70.00	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Carg17412 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXN9\|A0A1S3AXN9_CUCME	3.2e-96	88.94	photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0L4Y6\|A0A0A0L4Y6_CUCSA	2.1e-95	88.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=4 SV=1	[more]
tr\|A0A1U7ZRC5\|A0A1U7ZRC5_NELNU	5.2e-86	79.72	photosystem I reaction center subunit II, chloroplastic OS=Nelumbo nucifera OX=4...	[more]
tr\|B9RSQ3\|B9RSQ3_RICCO	8.8e-86	81.34	Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus commu...	[more]
tr\|A0A2I4GSF6\|A0A2I4GSF6_9ROSI	1.1e-85	80.00	photosystem I reaction center subunit II, chloroplastic-like OS=Juglans regia OX...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR036579	PsaD_sf
IPR003685	PsaD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17412-RA	Carg17412-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.1470.10		coord: 65..207 e-value: 1.7E-78 score: 262.9
None	No IPR available	PANTHER	PTHR31982:SF4	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..207
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 75..205 e-value: 6.3E-68 score: 226.4
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	FAMILY NOT NAMED	coord: 1..207
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	SSF64234	Photosystem I subunit PsaD	coord: 72..206

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17412	Cla021635	Watermelon (97103) v1	carwmB0603
Carg17412	Csa3G147780	Cucumber (Chinese Long) v2	carcuB0633
Carg17412	MELO3C006539	Melon (DHL92) v3.5.1	carmeB0610
Carg17412	CSPI03G13230	Wild cucumber (PI 183967)	carcpiB0639
Carg17412	Cucsa.254240	Cucumber (Gy14) v1	carcgyB0681
Carg17412	CmaCh06G014170	Cucurbita maxima (Rimu)	carcmaB0849
Carg17412	CmaCh14G016960	Cucurbita maxima (Rimu)	carcmaB0847
Carg17412	CmaCh00G003870	Cucurbita maxima (Rimu)	carcmaB0845
Carg17412	CmoCh14G017410	Cucurbita moschata (Rifu)	carcmoB0823
Carg17412	Lsi05G014280	Bottle gourd (USVL1VR-Ls)	carlsiB552
Carg17412	Cp4.1LG08g04270	Cucurbita pepo (Zucchini)	carcpeB0861
Carg17412	Cp4.1LG03g10890	Cucurbita pepo (Zucchini)	carcpeB0860
Carg17412	CsGy3G013350	Cucumber (Gy14) v2	carcgybB0605
Carg17412	MELO3C006539.2	Melon (DHL92) v3.6.1	carmedB0616
Carg17412	CsaV3_3G013420	Cucumber (Chinese Long) v3	carcucB0640
Carg17412	Cla97C05G086450	Watermelon (97103) v2	carwmbB0631
Carg17412	Bhi01G000599	Wax gourd	carwgoB0722

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17412	Carg23805	Silver-seed gourd	carcarB258

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17412	Silver-seed gourd	carcarB083
Carg17412	Silver-seed gourd	carcarB347
Carg17412	Cucurbita maxima (Rimu)	carcmaB0850
Carg17412	Cucurbita moschata (Rifu)	carcmoB0824
Carg17412	Cucurbita moschata (Rifu)	carcmoB0825
Carg17412	Cucurbita moschata (Rifu)	carcmoB0826
Carg17412	Cucurbita pepo (Zucchini)	carcpeB0857
Carg17412	Cucurbita pepo (Zucchini)	carcpeB0858
Carg17412	Bottle gourd (USVL1VR-Ls)	carlsiB550
Carg17412	Watermelon (Charleston Gray)	carwcgB0588
Carg17412	Watermelon (Charleston Gray)	carwcgB0589
Carg17412	Watermelon (97103) v1	carwmB0604
Carg17412	Watermelon (97103) v2	carwmbB0632