Cp4.1LG03g10890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g10890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhotosystem I reaction center subunit II
LocationCp4.1LG03 : 11478546 .. 11479175 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCACCGCCGTTACGATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAATCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCCGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCACCGCCGTTACGATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAATCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCCGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCACCGCCGTTACGATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAATCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCCGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Homology
[Close]
BLAST of Cp4.1LG03g10890 vs. Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 8.1e-103
Identity = 191/209 (91.39%), Postives = 198/209 (94.74%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  --EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]
BLAST of Cp4.1LG03g10890 vs. Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 9.6e-88
Identity = 173/212 (81.60%), Postives = 183/212 (86.32%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP LS PKST  T PWKQS  +SF   K L    + +R ++  AE EA A
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAE-EAPA 60

Query: 61  ATE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
           ATE   APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG
Sbjct: 61  ATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120

Query: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           PGREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 PGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]
BLAST of Cp4.1LG03g10890 vs. Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.4e-85
Identity = 163/209 (77.99%), Postives = 178/209 (85.17%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS PKS+A   PWKQS  L+  + K L    ++ R ++  AE  A  
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]
BLAST of Cp4.1LG03g10890 vs. Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 310.1 bits (793), Expect = 1.9e-83
Identity = 167/217 (76.96%), Postives = 183/217 (84.33%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSL---STPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAE 60
           MAMA QATLF+PS    + P  T +T  +KQ S ++F +     KPA+    ++ +A AE
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-----KPASRHHSIRAAAAAE 60

Query: 61  --AAAATE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120
             AAAATE   AP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE
Sbjct: 61  GKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120

Query: 121 MPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVY 180
           MPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVY
Sbjct: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVY 180

Query: 181 PEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           PEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]
BLAST of Cp4.1LG03g10890 vs. Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.2e-76
Identity = 152/208 (73.08%), Postives = 165/208 (79.33%), Query Frame = 1 

Query: 3   MAAQAT-LFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAA 62
           MA QA  +F+P+++T  S    +    SS       K L     + R  K  + + A A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSH----RPKSLSFTKTAIRAEKTESSSAAPAV 60

Query: 63  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]
BLAST of Cp4.1LG03g10890 vs. TrEMBL
Match: A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 9.0e-101
Identity = 191/209 (91.39%), Postives = 198/209 (94.74%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  --EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]
BLAST of Cp4.1LG03g10890 vs. TrEMBL
Match: A0A0D2TUC3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-87
Identity = 170/213 (79.81%), Postives = 187/213 (87.79%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSA---EAE 60
           MAMA QA LFTP+++TPKS A   PWK +S+ SF  S   +  + + R ++ +A   EA 
Sbjct: 1   MAMATQAGLFTPTITTPKSLA---PWKPASSFSFATSSKSLNFSMAQRTIRAAAADEEAS 60

Query: 61  AAAAT-EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
           +AAAT EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTG
Sbjct: 61  SAAATKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTG 120

Query: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           NPGR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210

[Close]
BLAST of Cp4.1LG03g10890 vs. TrEMBL
Match: B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis GN=RCOM_0677760 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 7.4e-87
Identity = 173/211 (81.99%), Postives = 182/211 (86.26%), Query Frame = 1 

Query: 1   MAMAAQATLFTPS-LSTPKSTA-VTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEA 60
           MAMA QA+LFTP+ LSTPKS+    +PWKQSS LS   +KP     A   I   +AE + 
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPRKYSIAQKTIKAAAAEGKT 60

Query: 61  AAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
               EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGA
Sbjct: 61  K---EAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]
BLAST of Cp4.1LG03g10890 vs. TrEMBL
Match: A0A068TRV1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.3e-86
Identity = 168/209 (80.38%), Postives = 187/209 (89.47%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS+P S  VT+PWKQSS ++F + KP IK   ++R ++  AE  + A
Sbjct: 1   MAMATQASLFTPTLSSP-SDRVTVPWKQSSLVAFASPKP-IKTNMATRTIRAMAEEASTA 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           A  APAGF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAI
Sbjct: 61  A--APAGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKISYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           +GVG N RSIGKN+SPIEVKFTGKQVY+L
Sbjct: 181 QGVGLNLRSIGKNISPIEVKFTGKQVYEL 205

[Close]
BLAST of Cp4.1LG03g10890 vs. TrEMBL
Match: A0A061DQS0_THECC (Photosystem I subunit D-2 OS=Theobroma cacao GN=TCM_004355 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.7e-86
Identity = 166/207 (80.19%), Postives = 179/207 (86.47%), Query Frame = 1 

Query: 3   MAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAAT 62
           MA QA LFTP++STPKS    +PWK S + SF   K L    A S I   +A+ EAA   
Sbjct: 1   MATQAGLFTPTISTPKSL---VPWKPSWSFSFATPKSLNLSMAHSTIRAAAADQEAATKE 60

Query: 63  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 122
           EAP GF+PPELDP+TPSP+F+GSTGGLLRKAQVEEFYVITW+SP+EQIFEMPTGGAAIMR
Sbjct: 61  EAPVGFTPPELDPNTPSPMFSGSTGGLLRKAQVEEFYVITWDSPREQIFEMPTGGAAIMR 120

Query: 123 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 182
           QGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQG 180

Query: 183 VGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 204

[Close]
BLAST of Cp4.1LG03g10890 vs. TAIR10
Match: AT1G03130.1 (AT1G03130.1 photosystem I subunit D-2)

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-77
Identity = 152/208 (73.08%), Postives = 165/208 (79.33%), Query Frame = 1 

Query: 3   MAAQAT-LFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAA 62
           MA QA  +F+P+++T  S    +    SS       K L     + R  K  + + A A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSH----RPKSLSFTKTAIRAEKTESSSAAPAV 60

Query: 63  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]
BLAST of Cp4.1LG03g10890 vs. TAIR10
Match: AT4G02770.1 (AT4G02770.1 photosystem I subunit D-1)

HSP 1 Score: 283.9 bits (725), Expect = 8.1e-77
Identity = 155/208 (74.52%), Postives = 162/208 (77.88%), Query Frame = 1 

Query: 3   MAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAAT 62
           MA QA     S  T  +T+        ST     S    K A  +     SA A AA AT
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPAT 60

Query: 63  -EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]
BLAST of Cp4.1LG03g10890 vs. NCBI nr
Match: gi|659076451|ref|XP_008438687.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 374.8 bits (961), Expect = 9.9e-101
Identity = 191/209 (91.39%), Postives = 200/209 (95.69%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKS+A++IPWKQS TLSF+ SKP +K A+SSR +KVSAEAEAA 
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  --EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]
BLAST of Cp4.1LG03g10890 vs. NCBI nr
Match: gi|449432708|ref|XP_004134141.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 1.3e-100
Identity = 191/209 (91.39%), Postives = 198/209 (94.74%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  --EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]
BLAST of Cp4.1LG03g10890 vs. NCBI nr
Match: gi|823202543|ref|XP_012435851.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Gossypium raimondii])

HSP 1 Score: 330.1 bits (845), Expect = 2.8e-87
Identity = 170/213 (79.81%), Postives = 187/213 (87.79%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSA---EAE 60
           MAMA QA LFTP+++TPKS A   PWK +S+ SF  S   +  + + R ++ +A   EA 
Sbjct: 1   MAMATQAGLFTPTITTPKSLA---PWKPASSFSFATSSKSLNFSMAQRTIRAAAADEEAS 60

Query: 61  AAAAT-EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
           +AAAT EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTG
Sbjct: 61  SAAATKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTG 120

Query: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           NPGR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210

[Close]
BLAST of Cp4.1LG03g10890 vs. NCBI nr
Match: gi|719972429|ref|XP_010277521.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 330.1 bits (845), Expect = 2.8e-87
Identity = 174/213 (81.69%), Postives = 183/213 (85.92%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKS-TAVTIPWKQSST-LSFINSKPLIKPAASSRIVKVSAE--A 60
           MAMA QA LFTP+LS PKS     +PWK SST LSFI+ +PL    A   I   +A+   
Sbjct: 1   MAMATQAALFTPTLSAPKSGNRALVPWKPSSTSLSFISPRPLNLSVAQRTIRAAAADEKT 60

Query: 61  EAAAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
           EA  A EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG
Sbjct: 61  EAPPAAEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120

Query: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           N GR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 NAGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 213

[Close]
BLAST of Cp4.1LG03g10890 vs. NCBI nr
Match: gi|657970185|ref|XP_008376830.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus domestica])

HSP 1 Score: 329.7 bits (844), Expect = 3.7e-87
Identity = 170/212 (80.19%), Postives = 183/212 (86.32%), Query Frame = 1 

Query: 1   MAMAAQATLFTPSLSTPKSTA--VTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEA 60
           MAMA QA+LFTP+ S PK+TA   T PWKQS + SF+  KPL    A +  +  SAE + 
Sbjct: 1   MAMATQASLFTPTPSAPKTTADRTTTPWKQSVSSSFMAPKPLKLSTARTMRINASAEEKT 60

Query: 61  AAAT-EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
              T EAP GF+PPELDP+TPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPTGG
Sbjct: 61  VTPTKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPTGG 120

Query: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210
           PGR+GVGQNFRSIGKNVSPIEVKFTGKQVYD+
Sbjct: 181 PGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDI 212

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g10890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSAD_CUCSA8.1e-10391.39Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=ps... [more]
PSAD_SOLLC9.6e-8881.60Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ... [more]
PSAD_NICSY3.4e-8577.99Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ... [more]
PSAD_SPIOL1.9e-8376.96Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=... [more]
PSAD2_ARATH2.2e-7673.08Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian... [more]
BLAST of Cp4.1LG03g10890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4Y6_CUCSA9.0e-10191.39Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1[more]
A0A0D2TUC3_GOSRA2.0e-8779.81Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1[more]
B9RSQ3_RICCO7.4e-8781.99Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus commu... [more]
A0A068TRV1_COFCA1.3e-8680.38Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1[more]
A0A061DQS0_THECC3.7e-8680.19Photosystem I subunit D-2 OS=Theobroma cacao GN=TCM_004355 PE=4 SV=1[more]
BLAST of Cp4.1LG03g10890 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03130.11.3e-7773.08 photosystem I subunit D-2[more]
AT4G02770.18.1e-7774.52 photosystem I subunit D-1[more]
BLAST of Cp4.1LG03g10890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076451|ref|XP_008438687.1|9.9e-10191.39PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo... [more]
gi|449432708|ref|XP_004134141.1|1.3e-10091.39PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati... [more]
gi|823202543|ref|XP_012435851.1|2.8e-8779.81PREDICTED: photosystem I reaction center subunit II, chloroplastic [Gossypium ra... [more]
gi|719972429|ref|XP_010277521.1|2.8e-8781.69PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nelumbo nuci... [more]
gi|657970185|ref|XP_008376830.1|3.7e-8780.19PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus d... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009538photosystem I reaction center
GO:0009522photosystem I
Vocabulary: INTERPRO
TermDefinition
IPR003685PsaD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0009522 photosystem I
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g10890.1Cp4.1LG03g10890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003685Photosystem I PsaDGENE3DG3DSA:3.30.1470.10coord: 74..208
score: 1.5
IPR003685Photosystem I PsaDPFAMPF02531PsaDcoord: 77..207
score: 6.3
IPR003685Photosystem I PsaDunknownSSF64234Photosystem I subunit PsaDcoord: 74..208
score: 4.32
NoneNo IPR availablePANTHERPTHR31982FAMILY NOT NAMEDcoord: 2..209
score: 2.8E
NoneNo IPR availablePANTHERPTHR31982:SF4PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATEDcoord: 2..209
score: 2.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g10890Cucsa.254240Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g10890CmaCh00G003870Cucurbita maxima (Rimu)cmacpeB004
Cp4.1LG03g10890CmaCh14G016960Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g10890CmaCh06G014170Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g10890CmoCh14G017410Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g10890Cla021635Watermelon (97103) v1cpewmB613
Cp4.1LG03g10890Csa3G147780Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g10890MELO3C006539Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g10890CSPI03G13230Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g10890Lsi05G014280Bottle gourd (USVL1VR-Ls)cpelsiB512
Cp4.1LG03g10890MELO3C006539.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g10890CsaV3_3G013420Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g10890Bhi01G000599Wax gourdcpewgoB0783
Cp4.1LG03g10890CsGy3G013350Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g10890Carg17412Silver-seed gourdcarcpeB0860
Cp4.1LG03g10890Carg23805Silver-seed gourdcarcpeB0317
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g10890Cp4.1LG08g04270Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g10890Cucumber (Chinese Long) v3cpecucB0791
Cp4.1LG03g10890Cucumber (Chinese Long) v3cpecucB0795
Cp4.1LG03g10890Wax gourdcpewgoB0800
Cp4.1LG03g10890Cucurbita pepo (Zucchini)cpecpeB183
Cp4.1LG03g10890Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g10890Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG03g10890Cucurbita maxima (Rimu)cmacpeB401
Cp4.1LG03g10890Cucurbita maxima (Rimu)cmacpeB536
Cp4.1LG03g10890Cucurbita maxima (Rimu)cmacpeB928
Cp4.1LG03g10890Cucurbita moschata (Rifu)cmocpeB363
Cp4.1LG03g10890Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g10890Cucurbita moschata (Rifu)cmocpeB862
Cp4.1LG03g10890Bottle gourd (USVL1VR-Ls)cpelsiB498
Cp4.1LG03g10890Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g10890Bottle gourd (USVL1VR-Ls)cpelsiB510
Cp4.1LG03g10890Watermelon (Charleston Gray)cpewcgB539
Cp4.1LG03g10890Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g10890Watermelon (97103) v1cpewmB590
Cp4.1LG03g10890Watermelon (97103) v1cpewmB605
Cp4.1LG03g10890Cucumber (Gy14) v2cgybcpeB959
Cp4.1LG03g10890Melon (DHL92) v3.6.1cpemedB666
Cp4.1LG03g10890Silver-seed gourdcarcpeB0106
Cp4.1LG03g10890Silver-seed gourdcarcpeB0454
Cp4.1LG03g10890Silver-seed gourdcarcpeB1061