CmoCh14G017410 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G017410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Photosystem I reaction center subunit II
Location	Cmo_Chr14 : 13566791 .. 13567417 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCACCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAGTCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATCTGTAA

mRNA sequence

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCACCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAGTCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATCTGTAA

Coding sequence (CDS)

ATGGCCATGGCCGCTCAAGCAACCCTCTTCACCCCATCACTCTCCACCCCCAAATCCACCGCCGTTACCATCCCATGGAAGCAATCCTCCACTCTCTCCTTCATCAACTCCAAGCCCCTCATCAAGCCTGCCGCATCTTCCCGAATAGTCAAAGTCTCAGCTGAGGCCGAGGCGGCGGCTACGGAGGCTCCTGCCGGATTCTCCCCACCAGAGCTCGACCCAAGTACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGACTACTCCGGAAGGCCCAGGTCGAGGAATTCTATGTCATAACATGGGAGTCCCCGAAGGAGCAAATCTTCGAAATGCCAACGGGAGGCGCAGCCATCATGCGACAGGGCCCGAATCTGCTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACAAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTTCCGAATGGGGAAGTTCAGTATTTGCACCCCAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTTGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAAGTCAAGTTCACTGGTAAACAAGTGTATGATCTGTAA

Homology

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BLAST of CmoCh14G017410 vs. Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 4.7e-103
Identity = 191/208 (91.83%), Postives = 198/208 (95.19%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CmoCh14G017410 vs. Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 7.3e-88
Identity = 171/211 (81.04%), Postives = 181/211 (85.78%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP LS PKST  T PWKQ S +SF   K L    + +R ++  AE   AA
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQ-SLVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  TE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
           TE   APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

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BLAST of CmoCh14G017410 vs. Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.9e-84
Identity = 163/209 (77.99%), Postives = 178/209 (85.17%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS PKS+A   PWKQS  L+  + K L    ++ R ++  AE  A  
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  -TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

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BLAST of CmoCh14G017410 vs. Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 308.9 bits (790), Expect = 4.2e-83
Identity = 166/217 (76.50%), Postives = 182/217 (83.87%), Query Frame = 1


Query: 1   MAMAAQATLFTPSL---STPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAE 60
           MAMA QATLF+PS    + P  T +T  +KQ S ++F +     KPA+    ++ +A AE
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-----KPASRHHSIRAAAAAE 60

Query: 61  ---AAATE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120
              AAATE   AP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE
Sbjct: 61  GKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120

Query: 121 MPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVY 180
           MPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVY
Sbjct: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVY 180

Query: 181 PEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           PEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

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BLAST of CmoCh14G017410 vs. Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-75
Identity = 154/211 (72.99%), Postives = 169/211 (80.09%), Query Frame = 1


Query: 3   MAAQAT-LFTPSLSTPKSTAVTIPWKQSS----TLSFINSKPLIKPAASSRIVKVSAEAE 62
           MA QA  +F+P+++T  S    +    SS    +LSF  +K  I+   +      S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF--TKTAIRAEKTE-----SSSAA 60

Query: 63  AAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 122
            A  EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 123 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 182
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 183 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

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BLAST of CmoCh14G017410 vs. TrEMBL
Match: A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 5.3e-101
Identity = 191/208 (91.83%), Postives = 198/208 (95.19%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CmoCh14G017410 vs. TrEMBL
Match: B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis GN=RCOM_0677760 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.1e-87
Identity = 174/210 (82.86%), Postives = 186/210 (88.57%), Query Frame = 1


Query: 1   MAMAAQATLFTPS-LSTPKSTA-VTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEA 60
           MAMA QA+LFTP+ LSTPKS+    +PWKQSS LS   +KP  K + + + +K +A AE 
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPR-KYSIAQKTIKAAA-AEG 60

Query: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
              EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA
Sbjct: 61  KTKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAA 120

Query: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of CmoCh14G017410 vs. TrEMBL
Match: A0A068TRV1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.3e-87
Identity = 168/208 (80.77%), Postives = 187/208 (89.90%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS+P S  VT+PWKQSS ++F + KP IK   ++R ++  AE EA+ 
Sbjct: 1   MAMATQASLFTPTLSSP-SDRVTVPWKQSSLVAFASPKP-IKTNMATRTIRAMAE-EAST 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
             APAGF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAIM
Sbjct: 61  AAAPAGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           RQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKISYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVG N RSIGKN+SPIEVKFTGKQVY+L
Sbjct: 181 GVGLNLRSIGKNISPIEVKFTGKQVYEL 205

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BLAST of CmoCh14G017410 vs. TrEMBL
Match: A0A0D2TUC3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.3e-86
Identity = 167/213 (78.40%), Postives = 183/213 (85.92%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAE--- 60
           MAMA QA LFTP+++TPKS A   PWK +S+ SF  S   +  + + R ++ +A  E   
Sbjct: 1   MAMATQAGLFTPTITTPKSLA---PWKPASSFSFATSSKSLNFSMAQRTIRAAAADEEAS 60

Query: 61  --AAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
             AA  EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTG
Sbjct: 61  SAAATKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTG 120

Query: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           NPGR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210

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BLAST of CmoCh14G017410 vs. TrEMBL
Match: A9PJR8_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.6e-86
Identity = 172/208 (82.69%), Postives = 181/208 (87.02%), Query Frame = 1


Query: 3   MAAQATLFTP-SLSTPKSTAVTI-PWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 62
           MAAQA+LFTP +LST KS+   I PWKQSS L   N KP        R +KV+A  E A 
Sbjct: 1   MAAQASLFTPPTLSTLKSSNQAIAPWKQSSFLPISNVKP-------QRTMKVAAAEETAV 60

Query: 63  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 201

[Close]

BLAST of CmoCh14G017410 vs. TAIR10
Match: AT1G03130.1 (AT1G03130.1 photosystem I subunit D-2)

HSP 1 Score: 284.3 bits (726), Expect = 6.2e-77
Identity = 154/211 (72.99%), Postives = 169/211 (80.09%), Query Frame = 1


Query: 3   MAAQAT-LFTPSLSTPKSTAVTIPWKQSS----TLSFINSKPLIKPAASSRIVKVSAEAE 62
           MA QA  +F+P+++T  S    +    SS    +LSF  +K  I+   +      S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF--TKTAIRAEKTE-----SSSAA 60

Query: 63  AAATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 122
            A  EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 123 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 182
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 183 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of CmoCh14G017410 vs. TAIR10
Match: AT4G02770.1 (AT4G02770.1 photosystem I subunit D-1)

HSP 1 Score: 280.8 bits (717), Expect = 6.8e-76
Identity = 153/208 (73.56%), Postives = 160/208 (76.92%), Query Frame = 1


Query: 3   MAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAAT- 62
           MA QA     S  T  +T+        ST     S    K A  +     SA A AA   
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPAT 60

Query: 63  -EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 122
            EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 120

Query: 123 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 182
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 180

Query: 183 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of CmoCh14G017410 vs. NCBI nr
Match: gi|659076451|ref|XP_008438687.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 5.8e-101
Identity = 191/208 (91.83%), Postives = 200/208 (96.15%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKS+A++IPWKQS TLSF+ SKP +K A+SSR +KVSAEAEAA 
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmoCh14G017410 vs. NCBI nr
Match: gi|449432708|ref|XP_004134141.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus])

HSP 1 Score: 375.2 bits (962), Expect = 7.6e-101
Identity = 191/208 (91.83%), Postives = 198/208 (95.19%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QATLFTPSLSTPKST ++IPWKQSSTLSF+ SKP +K A+SSR  KVSAEAE + 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmoCh14G017410 vs. NCBI nr
Match: gi|255551453|ref|XP_002516772.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Ricinus communis])

HSP 1 Score: 330.9 bits (847), Expect = 1.6e-87
Identity = 174/210 (82.86%), Postives = 186/210 (88.57%), Query Frame = 1


Query: 1   MAMAAQATLFTPS-LSTPKSTA-VTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEA 60
           MAMA QA+LFTP+ LSTPKS+    +PWKQSS LS   +KP  K + + + +K +A AE 
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPR-KYSIAQKTIKAAA-AEG 60

Query: 61  AATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 120
              EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA
Sbjct: 61  KTKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAA 120

Query: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180
           IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 121 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180

Query: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           REGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of CmoCh14G017410 vs. NCBI nr
Match: gi|661897328|emb|CDO99040.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 329.3 bits (843), Expect = 4.8e-87
Identity = 168/208 (80.77%), Postives = 187/208 (89.90%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS+P S  VT+PWKQSS ++F + KP IK   ++R ++  AE EA+ 
Sbjct: 1   MAMATQASLFTPTLSSP-SDRVTVPWKQSSLVAFASPKP-IKTNMATRTIRAMAE-EAST 60

Query: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
             APAGF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAIM
Sbjct: 61  AAAPAGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           RQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKISYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GVG N RSIGKN+SPIEVKFTGKQVY+L
Sbjct: 181 GVGLNLRSIGKNISPIEVKFTGKQVYEL 205

[Close]

BLAST of CmoCh14G017410 vs. NCBI nr
Match: gi|970035543|ref|XP_015079105.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Solanum pennellii])

HSP 1 Score: 328.6 bits (841), Expect = 8.1e-87
Identity = 172/211 (81.52%), Postives = 183/211 (86.73%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60
           MAMA QA+LFTP+LS PKSTA   PWKQS  +SF   KPL    + +R ++  AE   AA
Sbjct: 1   MAMATQASLFTPALSVPKSTA---PWKQS-LVSFSTPKPLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  TE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
           TE   APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 207

The following BLAST results are available for this feature:

BLAST of CmoCh14G017410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAD_CUCSA	4.7e-103	91.83	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=ps...	[more]
PSAD_SOLLC	7.3e-88	81.04	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
PSAD_NICSY	4.9e-84	77.99	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
PSAD_SPIOL	4.2e-83	76.50	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAD2_ARATH	1.1e-75	72.99	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CmoCh14G017410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Y6_CUCSA	5.3e-101	91.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1	[more]
B9RSQ3_RICCO	1.1e-87	82.86	Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus commu...	[more]
A0A068TRV1_COFCA	3.3e-87	80.77	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1	[more]
A0A0D2TUC3_GOSRA	1.3e-86	78.40	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1	[more]
A9PJR8_9ROSI	1.6e-86	82.69	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]

BLAST of CmoCh14G017410 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03130.1	6.2e-77	72.99	photosystem I subunit D-2	[more]
AT4G02770.1	6.8e-76	73.56	photosystem I subunit D-1	[more]

BLAST of CmoCh14G017410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076451\|ref\|XP_008438687.1\|	5.8e-101	91.83	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo...	[more]
gi\|449432708\|ref\|XP_004134141.1\|	7.6e-101	91.83	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati...	[more]
gi\|255551453\|ref\|XP_002516772.1\|	1.6e-87	82.86	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Ricinus comm...	[more]
gi\|661897328\|emb\|CDO99040.1\|	4.8e-87	80.77	unnamed protein product [Coffea canephora]	[more]
gi\|970035543\|ref\|XP_015079105.1\|	8.1e-87	81.52	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Solanum penn...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003685	PsaD

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G017410.1	CmoCh14G017410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003685	Photosystem I PsaD	GENE3D	G3DSA:3.30.1470.10		coord: 73..207 score: 1.5
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 76..206 score: 6.2
IPR003685	Photosystem I PsaD	unknown	SSF64234	Photosystem I subunit PsaD	coord: 73..207 score: 4.32
None	No IPR available	PANTHER	PTHR31982	FAMILY NOT NAMED	coord: 2..208 score: 1.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G017410	Cucsa.254240	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G017410	CmaCh00G003870	Cucurbita maxima (Rimu)	cmacmoB007
CmoCh14G017410	CmaCh14G016960	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G017410	CmaCh06G014170	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G017410	Cla021635	Watermelon (97103) v1	cmowmB231
CmoCh14G017410	Csa3G147780	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G017410	MELO3C006539	Melon (DHL92) v3.5.1	cmomeB230
CmoCh14G017410	CSPI03G13230	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G017410	Lsi05G014280	Bottle gourd (USVL1VR-Ls)	cmolsiB238
CmoCh14G017410	Cp4.1LG03g10890	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G017410	Cp4.1LG08g04270	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G017410	MELO3C006539.2	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G017410	CsaV3_3G013420	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G017410	Bhi01G000599	Wax gourd	cmowgoB0317
CmoCh14G017410	CsGy3G013350	Cucumber (Gy14) v2	cgybcmoB290
CmoCh14G017410	Carg17412	Silver-seed gourd	carcmoB0823
CmoCh14G017410	Carg23805	Silver-seed gourd	carcmoB0311

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G017410	Silver-seed gourd	carcmoB0096
CmoCh14G017410	Silver-seed gourd	carcmoB0444
CmoCh14G017410	Watermelon (97103) v2	cmowmbB243
CmoCh14G017410	Watermelon (97103) v2	cmowmbB246
CmoCh14G017410	Watermelon (97103) v2	cmowmbB263
CmoCh14G017410	Wax gourd	cmowgoB0300
CmoCh14G017410	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh14G017410	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh14G017410	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh14G017410	Cucurbita maxima (Rimu)	cmacmoB350
CmoCh14G017410	Cucurbita maxima (Rimu)	cmacmoB883
CmoCh14G017410	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G017410	Watermelon (97103) v1	cmowmB239
CmoCh14G017410	Cucurbita pepo (Zucchini)	cmocpeB230
CmoCh14G017410	Bottle gourd (USVL1VR-Ls)	cmolsiB213