CmaCh00G003870 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G003870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Photosystem I reaction center subunit II
Location	Cma_Chr00 : 31093139 .. 31093762 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCCCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGACTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCAACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGAAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAGGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCCCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGACTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCAACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGAAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAGGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCCCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGACTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCAACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGAAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAGGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

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BLAST of CmaCh00G003870 vs. Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 2.9e-100
Identity = 189/208 (90.87%), Postives = 195/208 (93.75%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKP-LNLASSSRLVKVSAEAEAAA 60
           MAMA QATLFTPSL+TPKST  ++PWKQS TLSFL +KP L  ASSSR  KVSAEAE  +
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE-TS 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of CmaCh00G003870 vs. Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 8.9e-86
Identity = 169/211 (80.09%), Postives = 180/211 (85.31%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPL-NLASSSRLVKVSAEAEAAA 60
           MAMA QA+LFTP L+ PKST    PWKQS  +SF   K L +  S +R ++  AE   AA
Sbjct: 1   MAMATQASLFTPPLSVPKSTTA--PWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  AE---APAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
            E   APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

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BLAST of CmaCh00G003870 vs. Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.4e-83
Identity = 163/208 (78.37%), Postives = 178/208 (85.58%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAA- 60
           MAMA QA+LFTP+L+ PKS+A   PWKQS   SF   +  +  S+ R ++  AE  A   
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS-LASFSPKQLKSTVSAPRPIRAMAEEAATKE 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
           AEAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  AEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+
Sbjct: 121 REGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

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BLAST of CmaCh00G003870 vs. Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 302.8 bits (774), Expect = 3.0e-81
Identity = 164/214 (76.64%), Postives = 178/214 (83.18%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTT---PKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEA 60
           MAMA QATLF+PS  +   P  T     +KQ   ++F + KP +   S R    +AE +A
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-KPASRHHSIRAA-AAAEGKA 60

Query: 61  AAA----EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120
           AAA    EAP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT
Sbjct: 61  AAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120

Query: 121 GGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180
           GGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEK
Sbjct: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEK 180

Query: 181 VNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 VNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

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BLAST of CmaCh00G003870 vs. Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.8e-76
Identity = 151/210 (71.90%), Postives = 168/210 (80.00%), Query Frame = 1


Query: 3   MAAQAT-LFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKV----SAEAEA 62
           MA QA  +F+P++TT  S    +    S      + +P +L+ +   ++     S+ A  
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSS------SHRPKSLSFTKTAIRAEKTESSSAAP 60

Query: 63  AAAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

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BLAST of CmaCh00G003870 vs. TrEMBL
Match: A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.2e-98
Identity = 189/208 (90.87%), Postives = 195/208 (93.75%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKP-LNLASSSRLVKVSAEAEAAA 60
           MAMA QATLFTPSL+TPKST  ++PWKQS TLSFL +KP L  ASSSR  KVSAEAE  +
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE-TS 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmaCh00G003870 vs. TrEMBL
Match: B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis GN=RCOM_0677760 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.0e-88
Identity = 174/209 (83.25%), Postives = 185/209 (88.52%), Query Frame = 1


Query: 1   MAMAAQATLFTPS-LTTPKSTATA-VPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAA 60
           MAMA QA+LFTP+ L+TPKS+  A VPWKQS  LS   AKP   + + + +K +A AE  
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPRKYSIAQKTIKAAA-AEGK 60

Query: 61  AAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

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BLAST of CmaCh00G003870 vs. TrEMBL
Match: V7BEA2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G055900g PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.9e-87
Identity = 170/208 (81.73%), Postives = 180/208 (86.54%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPK-STATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAA 60
           MAMA QA+LFTP  +  K S   +VPWKQSPT SF + KPL L+ + R       AEAA 
Sbjct: 1   MAMATQASLFTPPFSGLKLSDRASVPWKQSPTFSFTSPKPLKLSKTIRAA-ADETAEAAT 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQPYDL 207

[Close]

BLAST of CmaCh00G003870 vs. TrEMBL
Match: T2DMR3_PHAVU (Photosystem I reaction center subunit II chloroplastic-like protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.9e-87
Identity = 170/208 (81.73%), Postives = 180/208 (86.54%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPK-STATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAA 60
           MAMA QA+LFTP  +  K S   +VPWKQSPT SF + KPL L+ + R       AEAA 
Sbjct: 1   MAMATQASLFTPPFSGLKPSDRASVPWKQSPTFSFTSPKPLKLSKTIRAA-ADETAEAAT 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQPYDL 207

[Close]

BLAST of CmaCh00G003870 vs. TrEMBL
Match: A0A0D2TUC3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.3e-87
Identity = 171/213 (80.28%), Postives = 188/213 (88.26%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFL-NAKPLNLASSSRLVKVSA---EAE 60
           MAMA QA LFTP++TTPKS A   PWK + + SF  ++K LN + + R ++ +A   EA 
Sbjct: 1   MAMATQAGLFTPTITTPKSLA---PWKPASSFSFATSSKSLNFSMAQRTIRAAAADEEAS 60

Query: 61  AAAA--EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
           +AAA  EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTG
Sbjct: 61  SAAATKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTG 120

Query: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           NPGR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210

[Close]

BLAST of CmaCh00G003870 vs. TAIR10
Match: AT1G03130.1 (AT1G03130.1 photosystem I subunit D-2)

HSP 1 Score: 285.8 bits (730), Expect = 2.1e-77
Identity = 151/210 (71.90%), Postives = 168/210 (80.00%), Query Frame = 1


Query: 3   MAAQAT-LFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKV----SAEAEA 62
           MA QA  +F+P++TT  S    +    S      + +P +L+ +   ++     S+ A  
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSS------SHRPKSLSFTKTAIRAEKTESSSAAP 60

Query: 63  AAAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of CmaCh00G003870 vs. TAIR10
Match: AT4G02770.1 (AT4G02770.1 photosystem I subunit D-1)

HSP 1 Score: 281.2 bits (718), Expect = 5.2e-76
Identity = 154/215 (71.63%), Postives = 170/215 (79.07%), Query Frame = 1


Query: 3   MAAQAT-LFTPSLTTPKSTATAVPWKQSPTLSFLNA--KPLNLA---SSSRLVKVSAEAE 62
           MA QA  +F  ++TT  ++           L F +   +P +L+   ++ R  K  + A 
Sbjct: 1   MATQAAGIFNSAITTAATSGVK-------KLHFFSTTHRPKSLSFTKTAIRAEKTDSSAA 60

Query: 63  AAAA----EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 122
           AAAA    EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMP
Sbjct: 61  AAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMP 120

Query: 123 TGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 182
           TGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPE
Sbjct: 121 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPE 180

Query: 183 KVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           K NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 KANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of CmaCh00G003870 vs. NCBI nr
Match: gi|659076451|ref|XP_008438687.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 371.3 bits (952), Expect = 1.1e-99
Identity = 191/208 (91.83%), Postives = 199/208 (95.67%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKP-LNLASSSRLVKVSAEAEAAA 60
           MAMA QATLFTPSL+TPKS+A ++PWKQSPTLSFL +KP L  ASSSR +KVSAEAE AA
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAE-AA 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  VEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmaCh00G003870 vs. NCBI nr
Match: gi|449432708|ref|XP_004134141.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 4.6e-98
Identity = 189/208 (90.87%), Postives = 195/208 (93.75%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKP-LNLASSSRLVKVSAEAEAAA 60
           MAMA QATLFTPSL+TPKST  ++PWKQS TLSFL +KP L  ASSSR  KVSAEAE  +
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAE-TS 60

Query: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of CmaCh00G003870 vs. NCBI nr
Match: gi|720000376|ref|XP_010256006.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 336.7 bits (862), Expect = 3.0e-89
Identity = 175/212 (82.55%), Postives = 189/212 (89.15%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPKSTATA-VPWK-QSPTLSFLNAKPLNLASSSRLVKVSA---EA 60
           MAMA QA LFTP+L+TP S   A VPWK  S +LSFL+ +PLNL+ + R ++ SA   + 
Sbjct: 1   MAMATQAGLFTPTLSTPNSGNRALVPWKPSSSSLSFLSPRPLNLSLAHRTIRASAADGKT 60

Query: 61  EAAAAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 120
           EA  AEAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGG
Sbjct: 61  EAPPAEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGG 120

Query: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180
           AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 121 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 180

Query: 181 PGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           PGR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 PGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 212

[Close]

BLAST of CmaCh00G003870 vs. NCBI nr
Match: gi|719972429|ref|XP_010277521.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 333.6 bits (854), Expect = 2.5e-88
Identity = 174/213 (81.69%), Postives = 187/213 (87.79%), Query Frame = 1


Query: 1   MAMAAQATLFTPSLTTPKSTATA-VPWKQSPT-LSFLNAKPLNLASSSRLVKVSAEAEAA 60
           MAMA QA LFTP+L+ PKS   A VPWK S T LSF++ +PLNL+ + R ++ +A  E  
Sbjct: 1   MAMATQAALFTPTLSAPKSGNRALVPWKPSSTSLSFISPRPLNLSVAQRTIRAAAADEKT 60

Query: 61  ----AAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
               AAEAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG
Sbjct: 61  EAPPAAEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120

Query: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           N GR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 NAGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 213

[Close]

BLAST of CmaCh00G003870 vs. NCBI nr
Match: gi|255551453|ref|XP_002516772.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Ricinus communis])

HSP 1 Score: 332.8 bits (852), Expect = 4.3e-88
Identity = 174/209 (83.25%), Postives = 185/209 (88.52%), Query Frame = 1


Query: 1   MAMAAQATLFTPS-LTTPKSTATA-VPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAA 60
           MAMA QA+LFTP+ L+TPKS+  A VPWKQS  LS   AKP   + + + +K +A AE  
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPRKYSIAQKTIKAAA-AEGK 60

Query: 61  AAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

The following BLAST results are available for this feature:

BLAST of CmaCh00G003870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAD_CUCSA	2.9e-100	90.87	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=ps...	[more]
PSAD_SOLLC	8.9e-86	80.09	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
PSAD_NICSY	1.4e-83	78.37	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
PSAD_SPIOL	3.0e-81	76.64	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAD2_ARATH	3.8e-76	71.90	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CmaCh00G003870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Y6_CUCSA	3.2e-98	90.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1	[more]
B9RSQ3_RICCO	3.0e-88	83.25	Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus commu...	[more]
V7BEA2_PHAVU	1.9e-87	81.73	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G055900g PE=4 SV=1	[more]
T2DMR3_PHAVU	1.9e-87	81.73	Photosystem I reaction center subunit II chloroplastic-like protein OS=Phaseolus...	[more]
A0A0D2TUC3_GOSRA	3.3e-87	80.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1	[more]

BLAST of CmaCh00G003870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03130.1	2.1e-77	71.90	photosystem I subunit D-2	[more]
AT4G02770.1	5.2e-76	71.63	photosystem I subunit D-1	[more]

BLAST of CmaCh00G003870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076451\|ref\|XP_008438687.1\|	1.1e-99	91.83	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo...	[more]
gi\|449432708\|ref\|XP_004134141.1\|	4.6e-98	90.87	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati...	[more]
gi\|720000376\|ref\|XP_010256006.1\|	3.0e-89	82.55	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nelumbo nuci...	[more]
gi\|719972429\|ref\|XP_010277521.1\|	2.5e-88	81.69	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nelumbo nuci...	[more]
gi\|255551453\|ref\|XP_002516772.1\|	4.3e-88	83.25	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Ricinus comm...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003685	PsaD

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003870.1	CmaCh00G003870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003685	Photosystem I PsaD	GENE3D	G3DSA:3.30.1470.10		coord: 72..206 score: 1.5
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 75..205 score: 6.1
IPR003685	Photosystem I PsaD	unknown	SSF64234	Photosystem I subunit PsaD	coord: 72..206 score: 4.18
None	No IPR available	PANTHER	PTHR31982	FAMILY NOT NAMED	coord: 2..207 score: 2.4E
None	No IPR available	PANTHER	PTHR31982:SF4	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 2..207 score: 2.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G003870	Cucsa.254240	Cucumber (Gy14) v1	cgycmaB0701
CmaCh00G003870	Cla021635	Watermelon (97103) v1	cmawmB006
CmaCh00G003870	Csa3G147780	Cucumber (Chinese Long) v2	cmacuB006
CmaCh00G003870	MELO3C006539	Melon (DHL92) v3.5.1	cmameB005
CmaCh00G003870	CSPI03G13230	Wild cucumber (PI 183967)	cmacpiB006
CmaCh00G003870	CmoCh14G017410	Cucurbita moschata (Rifu)	cmacmoB007
CmaCh00G003870	Lsi05G014280	Bottle gourd (USVL1VR-Ls)	cmalsiB006
CmaCh00G003870	Cp4.1LG08g04270	Cucurbita pepo (Zucchini)	cmacpeB012
CmaCh00G003870	Cp4.1LG03g10890	Cucurbita pepo (Zucchini)	cmacpeB004
CmaCh00G003870	MELO3C006539.2	Melon (DHL92) v3.6.1	cmamedB008
CmaCh00G003870	CsaV3_3G013420	Cucumber (Chinese Long) v3	cmacucB0007
CmaCh00G003870	Cla97C05G086450	Watermelon (97103) v2	cmawmbB011
CmaCh00G003870	Bhi01G000599	Wax gourd	cmawgoB0004
CmaCh00G003870	CsGy3G013350	Cucumber (Gy14) v2	cgybcmaB284
CmaCh00G003870	Carg17412	Silver-seed gourd	carcmaB0845
CmaCh00G003870	Carg23805	Silver-seed gourd	carcmaB0306

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh00G003870	CmaCh14G016960	Cucurbita maxima (Rimu)	cmacmaB009
CmaCh00G003870	CmaCh06G014170	Cucurbita maxima (Rimu)	cmacmaB025

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G003870	Cucurbita moschata (Rifu)	cmacmoB024
CmaCh00G003870	Watermelon (Charleston Gray)	cmawcgB005