Cucsa.254240 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.254240
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Photosystem I reaction center subunit II
Location	scaffold02229 : 2618007 .. 2619018 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGCCAACCAAAGATCATCTTATCCACTCTCCAAATTCCCATCATCCACACAAAAaCCCCAAaTCCAATTCTTCTTATTATTCTTCCTCAATCCTCCATTCTCAATCCACCATTCCCAATCCTCTTCCTCTGCTCCAAATCCCATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCACCGGCATTTCCATTCCATGGAAGCAATCCTCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGGCCGCCTCCTCTTCCCGCTCTTTCAAGGTCTCCGCCGAAGCCGAGACTTCTGTCGAGGCTCCGGCCGGATTCTCCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCGATCTTCGCGGGCAGCACCGGAGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCGACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTtCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATCGGGAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAAGAAATTTAATTTCTTATGTTCTTATATGCTCTTTTTCTTTATGATGTCAATTATGAATCATACTCTCTTATATTAATTCTTATAAGTGTATGTTCTTGATCTTCTGTTCTGATTTTGTCTTGTGGAGTTATGATTTGTGTGTTAGATGTAAATTTGTCAGTTGTTTTTAGTGATCATGCTAGAAAATTCTGTGATGAAATTGATCTCTTTTTGTGTATGTGCGTATGTGACTTGCTTATGAGGT

mRNA sequence

TTGGCCAACCAAAGATCATCTTATCCACTCTCCAAATTCCCATCATCCACACAAAAACCCCAAATCCAATTCTTCTTATTATTCTTCCTCAATCCTCCATTCTCAATCCACCATTCCCAATCCTCTTCCTCTGCTCCAAATCCCATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCACCGGCATTTCCATTCCATGGAAGCAATCCTCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGGCCGCCTCCTCTTCCCGCTCTTTCAAGGTCTCCGCCGAAGCCGAGACTTCTGTCGAGGCTCCGGCCGGATTCTCCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCGATCTTCGCGGGCAGCACCGGAGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCGACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATCGGGAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAAGAAATTTAATTTCTTATGTTCTTATATGCTCTTTTTCTTTATGATGTCAATTATGAATCATACTCTCTTATATTAATTCTTATAAGTGTATGTTCTTGATCTTCTGTTCTGATTTTGTCTTGTGGAGTTATGATTTGTGTGTTAGATGTAAATTTGTCAGTTGTTTTTAGTGATCATGCTAGAAAATTCTGTGATGAAATTGATCTCTTTTTGTGTATGTGCGTATGTGACTTGCTTATGAGGT

Coding sequence (CDS)

ATGGCCATGGCCACTCAAGCCACCCTCTTCACCCCATCTCTCTCCACTCCCAAATCCACCGGCATTTCCATTCCATGGAAGCAATCCTCAACTCTCTCCTTCCTCACCTCCAAGCCCCACCTCAAGGCCGCCTCCTCTTCCCGCTCTTTCAAGGTCTCCGCCGAAGCCGAGACTTCTGTCGAGGCTCCGGCCGGATTCTCCCCACCCGAGCTCGACCCCAGCACCCCGTCCCCGATCTTCGCGGGCAGCACCGGAGGACTCCTCCGGAAGGCTCAAGTGGAGGAATTCTATGTCATAACATGGGAATCCCCTAAAGAGCAAATCTTTGAGATGCCGACCGGTGGCGCGGCGATCATGCGAGAAGGGCCGAATCTGCTGAAATTGGCAAGGAAAGAGCAGTGTTTGGCTTTGGGGACAAGGTTGAGATCAAAGTATAAGATTAAGTATCAATTTTATAGGGTTTTtCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATCGGGAAGAATGTTAGCCCTATTGAGGTTAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL*

Homology

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BLAST of Cucsa.254240 vs. Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 2.4e-115
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cucsa.254240 vs. Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.5e-88
Identity = 168/211 (79.62%), Postives = 178/211 (84.36%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAE----A 60
           MAMATQA+LFTP LS PKST  + PWKQS  +SF T K      S +R  +  AE    A
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  ETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
                APAGF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]

BLAST of Cucsa.254240 vs. Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 6.2e-87
Identity = 165/209 (78.95%), Postives = 176/209 (84.21%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAE--AET 60
           MAMATQA+LFTP+LS PKS   S PWKQS  L+  + K      S+ R  +  AE  A  
Sbjct: 1   MAMATQASLFTPALSAPKS---SAPWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]

BLAST of Cucsa.254240 vs. Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 318.2 bits (814), Expect = 6.9e-86
Identity = 164/213 (77.00%), Postives = 181/213 (84.98%), Query Frame = 1


Query: 1   MAMATQATLFTPSL---STPKSTGISIPWKQSSTLSFLT---SKPHLKAASSSRSFKVSA 60
           MAMATQATLF+PS    + P  T ++  +KQ S ++F +   S+ H   A+++   K +A
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRAAAAAEGKAAA 60

Query: 61  EAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
             ET  EAP GF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG
Sbjct: 61  ATETK-EAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120

Query: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           NPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 NPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]

BLAST of Cucsa.254240 vs. Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.2e-79
Identity = 154/211 (72.99%), Postives = 170/211 (80.57%), Query Frame = 1


Query: 3   MATQAT-LFTPSLSTPKSTGISIPWKQSST-----LSFLTSKPHLKAASSSRSFKVSAEA 62
           MATQA  +F  +++T  ++G+      S+T     LSF  +    +   SS +   +A A
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAA---AAAA 60

Query: 63  ETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 122
             + EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 123 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 182
           AIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 183 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of Cucsa.254240 vs. TrEMBL
Match: A0A0A0L4Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 2.7e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cucsa.254240 vs. TrEMBL
Match: B9RSQ3_RICCO (Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus communis GN=RCOM_0677760 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.2e-91
Identity = 174/209 (83.25%), Postives = 188/209 (89.95%), Query Frame = 1


Query: 1   MAMATQATLFTPS-LSTPKSTGISI-PWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAET 60
           MAMATQA+LFTP+ LSTPKS+  +I PWKQSS LS  T+KP  K + + ++ K +A    
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPR-KYSIAQKTIKAAAAEGK 60

Query: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           + EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Cucsa.254240 vs. TrEMBL
Match: A0A068TRV1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.1e-89
Identity = 163/207 (78.74%), Postives = 187/207 (90.34%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQA+LFTP+LS+P S  +++PWKQSS ++F + KP +K   ++R+ +  AE  ++ 
Sbjct: 1   MAMATQASLFTPTLSSP-SDRVTVPWKQSSLVAFASPKP-IKTNMATRTIRAMAEEASTA 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
            APAGF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAIMR
Sbjct: 61  AAPAGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           +GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKISYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VG N RSIGKN+SPIEVKFTGKQVY+L
Sbjct: 181 VGLNLRSIGKNISPIEVKFTGKQVYEL 205

[Close]

BLAST of Cucsa.254240 vs. TrEMBL
Match: A0A0D2TUC3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.5e-89
Identity = 166/213 (77.93%), Postives = 183/213 (85.92%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSA------ 60
           MAMATQA LFTP+++TPKS     PWK +S+ SF TS   L  + + R+ + +A      
Sbjct: 1   MAMATQAGLFTPTITTPKSLA---PWKPASSFSFATSSKSLNFSMAQRTIRAAAADEEAS 60

Query: 61  EAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 120
            A  + EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTG
Sbjct: 61  SAAATKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTG 120

Query: 121 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180
           GAAIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 121 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 180

Query: 181 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           NPGR+GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDL 210

[Close]

BLAST of Cucsa.254240 vs. TrEMBL
Match: I1NGD2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G144700 PE=4 SV=2)

HSP 1 Score: 335.5 bits (859), Expect = 4.6e-89
Identity = 172/208 (82.69%), Postives = 183/208 (87.98%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPK-STGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETS 60
           MAMATQA+LFTP LS  K S   + PWKQSSTLSF TSKP       SR+ + +A  +T+
Sbjct: 1   MAMATQASLFTPPLSGLKPSDRATAPWKQSSTLSFSTSKP----LKFSRTIRAAATDQTT 60

Query: 61  VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAIM
Sbjct: 61  -EAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN GR+
Sbjct: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQ 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQPYDL 203

[Close]

BLAST of Cucsa.254240 vs. TAIR10
Match: AT4G02770.1 (AT4G02770.1 photosystem I subunit D-1)

HSP 1 Score: 295.0 bits (754), Expect = 3.5e-80
Identity = 154/211 (72.99%), Postives = 170/211 (80.57%), Query Frame = 1


Query: 3   MATQAT-LFTPSLSTPKSTGISIPWKQSST-----LSFLTSKPHLKAASSSRSFKVSAEA 62
           MATQA  +F  +++T  ++G+      S+T     LSF  +    +   SS +   +A A
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAA---AAAA 60

Query: 63  ETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 122
             + EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 123 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 182
           AIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 183 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

[Close]

BLAST of Cucsa.254240 vs. TAIR10
Match: AT1G03130.1 (AT1G03130.1 photosystem I subunit D-2)

HSP 1 Score: 295.0 bits (754), Expect = 3.5e-80
Identity = 155/210 (73.81%), Postives = 168/210 (80.00%), Query Frame = 1


Query: 3   MATQAT-LFTPSLSTPKSTGISIPWKQSS----TLSFLTSKPHLKAASSSRSFKVSAEAE 62
           MATQA  +F+P+++T  S    +    SS    +LSF       K A  +   + S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSFT------KTAIRAEKTESSSAAP 60

Query: 63  TSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
              EAP GF+PP+LDP+TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Cucsa.254240 vs. NCBI nr
Match: gi|449432708|ref|XP_004134141.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sativus])

HSP 1 Score: 416.0 bits (1068), Expect = 3.9e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cucsa.254240 vs. NCBI nr
Match: gi|659076451|ref|XP_008438687.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo])

HSP 1 Score: 402.1 bits (1032), Expect = 5.8e-109
Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60
           MAMATQATLFTPSLSTPKS+ ISIPWKQS TLSFLTSKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Cucsa.254240 vs. NCBI nr
Match: gi|255551453|ref|XP_002516772.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Ricinus communis])

HSP 1 Score: 343.2 bits (879), Expect = 3.2e-91
Identity = 174/209 (83.25%), Postives = 188/209 (89.95%), Query Frame = 1


Query: 1   MAMATQATLFTPS-LSTPKSTGISI-PWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAET 60
           MAMATQA+LFTP+ LSTPKS+  +I PWKQSS LS  T+KP  K + + ++ K +A    
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPR-KYSIAQKTIKAAAAEGK 60

Query: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           + EAP GF+PPELDPSTPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAAI
Sbjct: 61  TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Cucsa.254240 vs. NCBI nr
Match: gi|645236013|ref|XP_008224535.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Prunus mume])

HSP 1 Score: 338.6 bits (867), Expect = 7.8e-90
Identity = 169/214 (78.97%), Postives = 188/214 (87.85%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKST--GISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAET 60
           MAMATQATLFTP+ S PK++    ++PWKQS + SF+  KP L  +S++R+ +++A AE 
Sbjct: 1   MAMATQATLFTPTPSAPKTSVERSTVPWKQSVSSSFMAPKP-LMLSSTTRTMRINAAAEE 60

Query: 61  SV-----EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120
                  EAP GF+PPELDP+TPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPT
Sbjct: 61  KTVAPPKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPT 120

Query: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180
           GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180

Query: 181 VNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VNPGR+GVGQNFRSIGKNV+PIEVKFTGKQVYD+
Sbjct: 181 VNPGRQGVGQNFRSIGKNVNPIEVKFTGKQVYDI 213

[Close]

BLAST of Cucsa.254240 vs. NCBI nr
Match: gi|657970185|ref|XP_008376830.1| (PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus domestica])

HSP 1 Score: 337.0 bits (863), Expect = 2.3e-89
Identity = 171/214 (79.91%), Postives = 187/214 (87.38%), Query Frame = 1


Query: 1   MAMATQATLFTPSLSTPKSTG--ISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAET 60
           MAMATQA+LFTP+ S PK+T    + PWKQS + SF+  KP LK  S++R+ +++A AE 
Sbjct: 1   MAMATQASLFTPTPSAPKTTADRTTTPWKQSVSSSFMAPKP-LKL-STARTMRINASAEE 60

Query: 61  SV-----EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 120
                  EAP GF+PPELDP+TPSPIF GSTGGLLRKAQ EEFYVITWESPKEQIFEMPT
Sbjct: 61  KTVTPTKEAPVGFTPPELDPTTPSPIFGGSTGGLLRKAQEEEFYVITWESPKEQIFEMPT 120

Query: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180
           GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 180

Query: 181 VNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VNPGR+GVGQNFRSIGKNVSPIEVKFTGKQVYD+
Sbjct: 181 VNPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDI 212

The following BLAST results are available for this feature:

BLAST of Cucsa.254240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAD_CUCSA	2.4e-115	100.00	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=ps...	[more]
PSAD_SOLLC	1.5e-88	79.62	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
PSAD_NICSY	6.2e-87	78.95	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
PSAD_SPIOL	6.9e-86	77.00	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAD1_ARATH	6.2e-79	72.99	Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Cucsa.254240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Y6_CUCSA	2.7e-113	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G147780 PE=4 SV=1	[more]
B9RSQ3_RICCO	2.2e-91	83.25	Photosystem I reaction center subunit II, chloroplast, putative OS=Ricinus commu...	[more]
A0A068TRV1_COFCA	2.1e-89	78.74	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026052001 PE=4 SV=1	[more]
A0A0D2TUC3_GOSRA	3.5e-89	77.93	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G004100 PE=4 SV=1	[more]
I1NGD2_SOYBN	4.6e-89	82.69	Uncharacterized protein OS=Glycine max GN=GLYMA_20G144700 PE=4 SV=2	[more]

BLAST of Cucsa.254240 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02770.1	3.5e-80	72.99	photosystem I subunit D-1	[more]
AT1G03130.1	3.5e-80	73.81	photosystem I subunit D-2	[more]

BLAST of Cucsa.254240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432708\|ref\|XP_004134141.1\|	3.9e-113	100.00	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis sati...	[more]
gi\|659076451\|ref\|XP_008438687.1\|	5.8e-109	96.14	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo...	[more]
gi\|255551453\|ref\|XP_002516772.1\|	3.2e-91	83.25	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Ricinus comm...	[more]
gi\|645236013\|ref\|XP_008224535.1\|	7.8e-90	78.97	PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Prunus ...	[more]
gi\|657970185\|ref\|XP_008376830.1\|	2.3e-89	79.91	PREDICTED: photosystem I reaction center subunit II, chloroplastic-like [Malus d...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003685	PsaD

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.254240.1	Cucsa.254240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003685	Photosystem I PsaD	GENE3D	G3DSA:3.30.1470.10		coord: 72..206 score: 1.2
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 75..205 score: 6.9
IPR003685	Photosystem I PsaD	unknown	SSF64234	Photosystem I subunit PsaD	coord: 72..206 score: 3.01
None	No IPR available	PANTHER	PTHR31982	FAMILY NOT NAMED	coord: 2..207 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.254240	Cla021635	Watermelon (97103) v1	cgywmB479
Cucsa.254240	Csa3G147780	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.254240	MELO3C006539	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.254240	CSPI03G13230	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.254240	CmaCh00G003870	Cucurbita maxima (Rimu)	cgycmaB0701
Cucsa.254240	CmaCh06G014170	Cucurbita maxima (Rimu)	cgycmaB0727
Cucsa.254240	CmaCh14G016960	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.254240	CmoCh14G017410	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.254240	Lsi05G014280	Bottle gourd (USVL1VR-Ls)	cgylsiB420
Cucsa.254240	Cp4.1LG03g10890	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.254240	Cp4.1LG08g04270	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.254240	MELO3C006539.2	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.254240	CsaV3_3G013420	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.254240	Cla97C05G086450	Watermelon (97103) v2	cgywmbB452
Cucsa.254240	Bhi01G000599	Wax gourd	cgywgoB522
Cucsa.254240	Carg23805	Silver-seed gourd	carcgyB0265
Cucsa.254240	Carg17412	Silver-seed gourd	carcgyB0681

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.254240	Cucurbita pepo (Zucchini)	cgycpeB0676
Cucsa.254240	Bottle gourd (USVL1VR-Ls)	cgylsiB412
Cucsa.254240	Silver-seed gourd	carcgyB0083
Cucsa.254240	Silver-seed gourd	carcgyB0383
Cucsa.254240	Watermelon (97103) v2	cgywmbB453
Cucsa.254240	Wax gourd	cgywgoB511
Cucsa.254240	Cucurbita maxima (Rimu)	cgycmaB0714
Cucsa.254240	Cucurbita maxima (Rimu)	cgycmaB0731
Cucsa.254240	Cucurbita moschata (Rifu)	cgycmoB0707
Cucsa.254240	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.254240	Cucurbita moschata (Rifu)	cgycmoB0720
Cucsa.254240	Watermelon (Charleston Gray)	cgywcgB442
Cucsa.254240	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.254240	Watermelon (97103) v1	cgywmB472
Cucsa.254240	Watermelon (97103) v1	cgywmB483