Lsi05G013670 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G013670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RALF
Location	chr05 : 21548309 .. 21548641 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTACAATCTTGCTTTCTTCTCCTTCTCTTTCTCCTCCTTCTCCAACATCTTTGTCTCGTTCGAGCTTCATCGGCGCATTCTTGCAATGGCTCCATAGCCGAGTGTGGTAGCGAGGAAGAGATACTGATGGAGTCGGAGATAAGTCGAAGGTTTCTCGAACAACAAAAGAAATACATCTCCATTGGAGCTTTGAAGAAGGATCATCCAGCTTGCGATGGTGGTGGCAGCGGCCAACCTTACACCAAAAGCGGAAGCTGCTCTCCGCCACAAACTAATCCTTACAATCGAGGCTGCTCTAAGATATATCGTTGTAGGTCGGATGATTGA

mRNA sequence

ATGCCTTTACAATCTTGCTTTCTTCTCCTTCTCTTTCTCCTCCTTCTCCAACATCTTTGTCTCGTTCGAGCTTCATCGGCGCATTCTTGCAATGGCTCCATAGCCGAGTGTGGTAGCGAGGAAGAGATACTGATGGAGTCGGAGATAAGTCGAAGGTTTCTCGAACAACAAAAGAAATACATCTCCATTGGAGCTTTGAAGAAGGATCATCCAGCTTGCGATGGTGGTGGCAGCGGCCAACCTTACACCAAAAGCGGAAGCTGCTCTCCGCCACAAACTAATCCTTACAATCGAGGCTGCTCTAAGATATATCGTTGTAGGTCGGATGATTGA

Coding sequence (CDS)

ATGCCTTTACAATCTTGCTTTCTTCTCCTTCTCTTTCTCCTCCTTCTCCAACATCTTTGTCTCGTTCGAGCTTCATCGGCGCATTCTTGCAATGGCTCCATAGCCGAGTGTGGTAGCGAGGAAGAGATACTGATGGAGTCGGAGATAAGTCGAAGGTTTCTCGAACAACAAAAGAAATACATCTCCATTGGAGCTTTGAAGAAGGATCATCCAGCTTGCGATGGTGGTGGCAGCGGCCAACCTTACACCAAAAGCGGAAGCTGCTCTCCGCCACAAACTAATCCTTACAATCGAGGCTGCTCTAAGATATATCGTTGTAGGTCGGATGATTGA

Protein sequence

MPLQSCFLLLLFLLLLQHLCLVRASSAHSCNGSIAECGSEEEILMESEISRRFLEQQKKYISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSDD

Homology

[Close]

BLAST of Lsi05G013670 vs. Swiss-Prot
Match: RLF32_ARATH (Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 1


Query: 8   LLLLFLLLLQHLCLVRASSAHSCNGSIAECGS-----EEEILMESEISRRFLEQQKKYIS 67
           + + FL LL      +ASS+  CNGS+AEC S     E  ++MES  S+R  E+Q   +S
Sbjct: 12  ITIFFLCLLLAHVTSKASSSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKLS 71

Query: 68  IGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSD 110
            GAL+++ PACDGG  G+ Y  S  C PP +NPY+RGCSK YRC  D
Sbjct: 72  YGALRRNQPACDGGKRGESY--STQCLPPPSNPYSRGCSKHYRCGRD 116

[Close]

BLAST of Lsi05G013670 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-11
Identity = 42/86 (48.84%), Postives = 50/86 (58.14%), Query Frame = 1


Query: 24  ASSAHSCNGSIAEC-GSEEEILMESEISRRFLEQQKKYISIGALKKDHPACDGGGSGQPY 83
           A S   C GSI EC   EEE  ++SE +RR L   KKYIS GAL+K+   C   G+    
Sbjct: 35  ARSGGGCKGSIGECIAEEEEFELDSESNRRILAT-KKYISYGALQKNSVPCSRRGASYYN 94

Query: 84  TKSGSCSPPQTNPYNRGCSKIYRCRS 109
            K G+    Q NPY+RGCS I RCRS
Sbjct: 95  CKPGA----QANPYSRGCSAITRCRS 115

[Close]

BLAST of Lsi05G013670 vs. Swiss-Prot
Match: RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-10
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 1


Query: 30  CNGSIAECGSEEEILMESEISRRFLEQQKKYISIGALKKDHPACDGGGSGQPYTKSGSCS 89
           C+GSIAEC   EE  M+SEI+RR L   K YIS  +LK++   C   G+     ++G+  
Sbjct: 47  CHGSIAECIGAEEEEMDSEINRRILATTK-YISYQSLKRNSVPCSRRGASYYNCQNGA-- 106

Query: 90  PPQTNPYNRGCSKIYRCRS 109
             Q NPY+RGCSKI RCRS
Sbjct: 107 --QANPYSRGCSKIARCRS 120

[Close]

BLAST of Lsi05G013670 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-10
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1


Query: 30  CNGSIAECG---SEEEILMESEISRRFLEQQKKYISIGALKKDHPACDGGGSGQPYTKSG 89
           CNG+IAEC    +EEE  M+SEI+RR L    KYIS GAL+++   C   G+     + G
Sbjct: 40  CNGTIAECSLSTAEEEFEMDSEINRRIL-ATTKYISYGALRRNTVPCSRRGASYYNCRRG 99

Query: 90  SCSPPQTNPYNRGCSKIYRCR 108
           +    Q NPY+RGCS I RCR
Sbjct: 100 A----QANPYSRGCSAITRCR 115

[Close]

BLAST of Lsi05G013670 vs. Swiss-Prot
Match: RLF24_ARATH (Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 46/115 (40.00%), Postives = 57/115 (49.57%), Query Frame = 1


Query: 4   QSCFLLLLFLLLLQ-HLCLVRASSAHSCNGSI-------AECGSEE-EILMESEISRRFL 63
           +S  L+ L LL LQ HL +       S NG I          G EE E +M SEISRR +
Sbjct: 3   RSLALVYLSLLCLQTHLSISVTVPIPSVNGEIDAMLNRNGVIGEEEGEEMMPSEISRRVM 62

Query: 64  EQQKKYISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSD 110
             +K+YIS   L++D   C   G+     +SG     Q N YNRGCS I RC  D
Sbjct: 63  MMRKQYISYETLRRDMVPCQKPGASYYACRSG-----QANAYNRGCSVITRCARD 112

[Close]

BLAST of Lsi05G013670 vs. TrEMBL
Match: A0A0A0L9A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.0e-44
Identity = 92/112 (82.14%), Postives = 98/112 (87.50%), Query Frame = 1


Query: 1   MPLQSCFLLLLFLLLL--QHLCLVRASSAHSCNGSIAECGSEEEILMESEISRRFLEQQK 60
           M LQ+CFLLLLFL L   Q LCLVRASS HSCNGSIA C +EEE+LMESEI+RRFLEQQK
Sbjct: 17  MSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEEMLMESEITRRFLEQQK 76

Query: 61  KYISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSDD 111
           KYISIGALKKDHPACDG   GQPYT+SGSC+PP  NPYNRGCSKIYRCRSDD
Sbjct: 77  KYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 128

[Close]

BLAST of Lsi05G013670 vs. TrEMBL
Match: A0A0A0L624_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171850 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-30
Identity = 78/101 (77.23%), Postives = 82/101 (81.19%), Query Frame = 1


Query: 1   MPLQSCFLLLLFL-LLLQHLCLVRASSAHSCNGSIAECGSEEEILMESEISRRFLEQQKK 60
           M LQ+CFLLLLFL  LLQ LCLVR SS HSCNGSIAEC +EEE+LMESEI+RRFL QQKK
Sbjct: 1   MSLQTCFLLLLFLSFLLQDLCLVRGSSMHSCNGSIAECANEEEMLMESEITRRFLAQQKK 60

Query: 61  -YISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRG 100
            YIS   LKKD PACD G SGQPYTKSGSC P Q NPYN G
Sbjct: 61  NYISYPTLKKDRPACD-GASGQPYTKSGSCVPSQANPYNPG 100

[Close]

BLAST of Lsi05G013670 vs. TrEMBL
Match: A0A0S3R1D3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G214200 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1


Query: 6   CFLLLLFLLLLQ-HLCLVRASSAH--SCNGSIAECGSEEEILMESEISRRFLEQQKKYIS 65
           CF+ L+F   ++   C V + ++H  +CNGSIAEC  E+E+LMESE SRRFLEQ KKYIS
Sbjct: 12  CFIYLIFFSFMRLSSCTVLSLTSHVSTCNGSIAECNQEDELLMESETSRRFLEQ-KKYIS 71

Query: 66  IGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSD 110
            GAL++D P C+GGGSG+ Y+ SG C PP +NP+NRGCSK YRCRSD
Sbjct: 72  NGALQRDKPVCNGGGSGEAYSNSGGCLPPPSNPHNRGCSKYYRCRSD 117

[Close]

BLAST of Lsi05G013670 vs. TrEMBL
Match: C6T1A5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G151400 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-26
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1


Query: 7   FLLLLFLLLLQHLCLVRASSAHSCNGSIAECGSEEEILMESEISRRFLEQQKKYISIGAL 66
           F+L  F+           S A +CNGSIAEC  E+E+LMESEISRRFLEQ++ YIS GAL
Sbjct: 16  FMLFSFMHFSSCTVFSLKSHASTCNGSIAECNQEDELLMESEISRRFLEQKRSYISNGAL 75

Query: 67  KKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSD 110
           ++D P C+GGGSG+ Y+K+G C PP +NP NRGCSK YRCRSD
Sbjct: 76  QRDKPVCNGGGSGEAYSKTGGCLPPPSNPQNRGCSKYYRCRSD 118

[Close]

BLAST of Lsi05G013670 vs. TrEMBL
Match: A0A151SJC7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_001065 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-26
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 25  SSAHSCNGSIAECGSEEEILMESEISRRFLEQQKKYISIGALKKDHPACDGGGSGQPYTK 84
           S A +CNGSI+EC  E+E+LMESEISRRFLEQ K+YIS GAL++D P C+GGGSG+ Y+K
Sbjct: 13  SHASTCNGSISECNQEDELLMESEISRRFLEQ-KRYISNGALQRDKPVCNGGGSGEAYSK 72

Query: 85  SGSCSPPQTNPYNRGCSKIYRCRSD 110
           +G C PP +NP NRGCSK YRCRSD
Sbjct: 73  TGGCLPPPSNPQNRGCSKYYRCRSD 96

[Close]

BLAST of Lsi05G013670 vs. TAIR10
Match: AT4G14010.1 (AT4G14010.1 ralf-like 32)

HSP 1 Score: 90.1 bits (222), Expect = 9.1e-19
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 1


Query: 8   LLLLFLLLLQHLCLVRASSAHSCNGSIAECGS-----EEEILMESEISRRFLEQQKKYIS 67
           + + FL LL      +ASS+  CNGS+AEC S     E  ++MES  S+R  E+Q   +S
Sbjct: 12  ITIFFLCLLLAHVTSKASSSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKLS 71

Query: 68  IGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSD 110
            GAL+++ PACDGG  G+ Y  S  C PP +NPY+RGCSK YRC  D
Sbjct: 72  YGALRRNQPACDGGKRGESY--STQCLPPPSNPYSRGCSKHYRCGRD 116

[Close]

BLAST of Lsi05G013670 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 1


Query: 30  CNGSIAECGSEEEILMESEISRRFLEQQKKYISIGALKKDHPACDGGGSGQPYTKSGSCS 89
           C+GSIAEC   EE  M+SEI+RR L   K YIS  +LK++   C   G+     ++G+  
Sbjct: 47  CHGSIAECIGAEEEEMDSEINRRILATTK-YISYQSLKRNSVPCSRRGASYYNCQNGA-- 106

Query: 90  PPQTNPYNRGCSKIYRCRS 109
             Q NPY+RGCSKI RCRS
Sbjct: 107 --QANPYSRGCSKIARCRS 120

[Close]

BLAST of Lsi05G013670 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1


Query: 30  CNGSIAECG---SEEEILMESEISRRFLEQQKKYISIGALKKDHPACDGGGSGQPYTKSG 89
           CNG+IAEC    +EEE  M+SEI+RR L    KYIS GAL+++   C   G+     + G
Sbjct: 40  CNGTIAECSLSTAEEEFEMDSEINRRIL-ATTKYISYGALRRNTVPCSRRGASYYNCRRG 99

Query: 90  SCSPPQTNPYNRGCSKIYRCR 108
           +    Q NPY+RGCS I RCR
Sbjct: 100 A----QANPYSRGCSAITRCR 115

[Close]

BLAST of Lsi05G013670 vs. TAIR10
Match: AT3G23805.1 (AT3G23805.1 ralf-like 24)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 46/115 (40.00%), Postives = 57/115 (49.57%), Query Frame = 1


Query: 4   QSCFLLLLFLLLLQ-HLCLVRASSAHSCNGSI-------AECGSEE-EILMESEISRRFL 63
           +S  L+ L LL LQ HL +       S NG I          G EE E +M SEISRR +
Sbjct: 3   RSLALVYLSLLCLQTHLSISVTVPIPSVNGEIDAMLNRNGVIGEEEGEEMMPSEISRRVM 62

Query: 64  EQQKKYISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSD 110
             +K+YIS   L++D   C   G+     +SG     Q N YNRGCS I RC  D
Sbjct: 63  MMRKQYISYETLRRDMVPCQKPGASYYACRSG-----QANAYNRGCSVITRCARD 112

[Close]

BLAST of Lsi05G013670 vs. TAIR10
Match: AT4G13950.1 (AT4G13950.1 ralf-like 31)

HSP 1 Score: 51.6 bits (122), Expect = 3.6e-07
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 1


Query: 40  EEEILMESEISRRFLEQQKKYISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRG 99
           E+E LM +EISRR L  QK+YI    L++D   C   G+     +SG     Q N Y+RG
Sbjct: 43  EDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-----QANSYSRG 102

Query: 100 CSKIYRCRSD 110
           C  I RC  D
Sbjct: 103 CDTITRCARD 107

[Close]

BLAST of Lsi05G013670 vs. NCBI nr
Match: gi|659077106|ref|XP_008439036.1| (PREDICTED: protein RALF-like 32 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.4e-44
Identity = 94/111 (84.68%), Postives = 98/111 (88.29%), Query Frame = 1


Query: 1   MPLQSCFLLLL-FLLLLQHLCLVRASSAHSCNGSIAECGSEEEILMESEISRRFLEQQKK 60
           M LQ CFLLLL FL LLQ LCLVRASS HSCNGSIAECGSE+EILMESEISRRFL QQKK
Sbjct: 10  MSLQPCFLLLLLFLFLLQDLCLVRASSTHSCNGSIAECGSEDEILMESEISRRFLAQQKK 69

Query: 61  YISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSDD 111
           YISIGALKKDHPACDG   G+PYTKSGSC+PP  NPY+RGC KIYRCRSDD
Sbjct: 70  YISIGALKKDHPACDGASGGRPYTKSGSCAPPPANPYDRGCPKIYRCRSDD 120

[Close]

BLAST of Lsi05G013670 vs. NCBI nr
Match: gi|778679218|ref|XP_004147646.2| (PREDICTED: protein RALF-like 32 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 92/112 (82.14%), Postives = 98/112 (87.50%), Query Frame = 1


Query: 1   MPLQSCFLLLLFLLLL--QHLCLVRASSAHSCNGSIAECGSEEEILMESEISRRFLEQQK 60
           M LQ+CFLLLLFL L   Q LCLVRASS HSCNGSIA C +EEE+LMESEI+RRFLEQQK
Sbjct: 17  MSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEEMLMESEITRRFLEQQK 76

Query: 61  KYISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSDD 111
           KYISIGALKKDHPACDG   GQPYT+SGSC+PP  NPYNRGCSKIYRCRSDD
Sbjct: 77  KYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 128

[Close]

BLAST of Lsi05G013670 vs. NCBI nr
Match: gi|700202095|gb|KGN57228.1| (hypothetical protein Csa_3G171850 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-30
Identity = 78/101 (77.23%), Postives = 82/101 (81.19%), Query Frame = 1


Query: 1   MPLQSCFLLLLFL-LLLQHLCLVRASSAHSCNGSIAECGSEEEILMESEISRRFLEQQKK 60
           M LQ+CFLLLLFL  LLQ LCLVR SS HSCNGSIAEC +EEE+LMESEI+RRFL QQKK
Sbjct: 1   MSLQTCFLLLLFLSFLLQDLCLVRGSSMHSCNGSIAECANEEEMLMESEITRRFLAQQKK 60

Query: 61  -YISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRG 100
            YIS   LKKD PACD G SGQPYTKSGSC P Q NPYN G
Sbjct: 61  NYISYPTLKKDRPACD-GASGQPYTKSGSCVPSQANPYNPG 100

[Close]

BLAST of Lsi05G013670 vs. NCBI nr
Match: gi|951070903|ref|XP_014490978.1| (PREDICTED: protein RALF-like 32 [Vigna radiata var. radiata])

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 66/110 (60.00%), Postives = 83/110 (75.45%), Query Frame = 1


Query: 3   LQSCFLLLLFLLLLQ-HLCLVRASSAH--SCNGSIAECGSEEEILMESEISRRFLEQQKK 62
           ++ CF  L+F   ++   C V + + H  +CNGSIAEC  E+E+LMESEISRRFLEQ KK
Sbjct: 9   IRLCFFYLMFFGFMRLSSCTVLSLTPHVSTCNGSIAECNQEDELLMESEISRRFLEQ-KK 68

Query: 63  YISIGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSD 110
           YIS GAL++D P C+GGGSG+ Y+ SG C PP +NP+NRGCSK YRCRSD
Sbjct: 69  YISNGALQRDKPVCNGGGSGEAYSNSGGCLPPPSNPHNRGCSKYYRCRSD 117

[Close]

BLAST of Lsi05G013670 vs. NCBI nr
Match: gi|965658049|dbj|BAT74468.1| (hypothetical protein VIGAN_01214200 [Vigna angularis var. angularis])

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1


Query: 6   CFLLLLFLLLLQ-HLCLVRASSAH--SCNGSIAECGSEEEILMESEISRRFLEQQKKYIS 65
           CF+ L+F   ++   C V + ++H  +CNGSIAEC  E+E+LMESE SRRFLEQ KKYIS
Sbjct: 12  CFIYLIFFSFMRLSSCTVLSLTSHVSTCNGSIAECNQEDELLMESETSRRFLEQ-KKYIS 71

Query: 66  IGALKKDHPACDGGGSGQPYTKSGSCSPPQTNPYNRGCSKIYRCRSD 110
            GAL++D P C+GGGSG+ Y+ SG C PP +NP+NRGCSK YRCRSD
Sbjct: 72  NGALQRDKPVCNGGGSGEAYSNSGGCLPPPSNPHNRGCSKYYRCRSD 117

The following BLAST results are available for this feature:

BLAST of Lsi05G013670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF32_ARATH	1.6e-17	47.66	Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1	[more]
RALF_TOBAC	6.5e-11	48.84	Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1	[more]
RLF1_ARATH	1.9e-10	49.37	Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1	[more]
RLF33_ARATH	3.2e-10	48.15	Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1	[more]
RLF24_ARATH	2.2e-06	40.00	Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1	[more]

BLAST of Lsi05G013670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A8_CUCSA	7.0e-44	82.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1	[more]
A0A0A0L624_CUCSA	2.6e-30	77.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171850 PE=4 SV=1	[more]
A0A0S3R1D3_PHAAN	1.3e-26	60.75	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G214200 PE=...	[more]
C6T1A5_SOYBN	1.7e-26	60.19	Uncharacterized protein OS=Glycine max GN=GLYMA_05G151400 PE=2 SV=1	[more]
A0A151SJC7_CAJCA	1.7e-26	69.41	Uncharacterized protein OS=Cajanus cajan GN=KK1_001065 PE=4 SV=1	[more]

BLAST of Lsi05G013670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14010.1	9.1e-19	47.66	ralf-like 32	[more]
AT1G02900.1	1.1e-11	49.37	rapid alkalinization factor 1	[more]
AT4G15800.1	1.8e-11	48.15	ralf-like 33	[more]
AT3G23805.1	1.2e-07	40.00	ralf-like 24	[more]
AT4G13950.1	3.6e-07	42.86	ralf-like 31	[more]

BLAST of Lsi05G013670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077106\|ref\|XP_008439036.1\|	3.4e-44	84.68	PREDICTED: protein RALF-like 32 [Cucumis melo]	[more]
gi\|778679218\|ref\|XP_004147646.2\|	1.0e-43	82.14	PREDICTED: protein RALF-like 32 [Cucumis sativus]	[more]
gi\|700202095\|gb\|KGN57228.1\|	3.7e-30	77.23	hypothetical protein Csa_3G171850 [Cucumis sativus]	[more]
gi\|951070903\|ref\|XP_014490978.1\|	1.9e-26	60.00	PREDICTED: protein RALF-like 32 [Vigna radiata var. radiata]	[more]
gi\|965658049\|dbj\|BAT74468.1\|	1.9e-26	60.75	hypothetical protein VIGAN_01214200 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0007154	cell communication
biological_process	GO:0044700	single organism signaling
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0048046	apoplast
molecular_function	GO:0004871	signal transducer activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005179	hormone activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G013670.1	Lsi05G013670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 41..107 score: 1.1
None	No IPR available	unknown	Coil	Coil	coord: 107..110 scor
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 6..110 score: 2.0
None	No IPR available	PANTHER	PTHR33136:SF3	PROTEIN RALF-LIKE 32	coord: 6..110 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G013670	Csa3G171840	Cucumber (Chinese Long) v2	culsiB210
Lsi05G013670	CSPI03G15560	Wild cucumber (PI 183967)	cpilsiB208
Lsi05G013670	Cucsa.251990	Cucumber (Gy14) v1	cgylsiB416
Lsi05G013670	CmaCh14G015430	Cucurbita maxima (Rimu)	cmalsiB246
Lsi05G013670	CmoCh14G015780	Cucurbita moschata (Rifu)	cmolsiB234
Lsi05G013670	CmoCh06G015950	Cucurbita moschata (Rifu)	cmolsiB759
Lsi05G013670	Cla021850	Watermelon (97103) v1	lsiwmB366
Lsi05G013670	MELO3C006773	Melon (DHL92) v3.5.1	lsimeB379
Lsi05G013670	MELO3C006773.2	Melon (DHL92) v3.6.1	lsimedB397
Lsi05G013670	Cla97C05G088730	Watermelon (97103) v2	lsiwmbB334
Lsi05G013670	Bhi01G000843	Wax gourd	lsiwgoB444
Lsi05G013670	Cp4.1LG08g05550	Cucurbita pepo (Zucchini)	cpelsiB715
Lsi05G013670	Cp4.1LG03g12150	Cucurbita pepo (Zucchini)	cpelsiB507
Lsi05G013670	CsGy3G015610	Cucumber (Gy14) v2	cgyblsiB197
Lsi05G013670	Carg15515	Silver-seed gourd	carlsiB633
Lsi05G013670	Carg24781	Silver-seed gourd	carlsiB951
Lsi05G013670	CsaV3_3G015740	Cucumber (Chinese Long) v3	cuclsiB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G013670	Cucumber (Chinese Long) v3	cuclsiB245
Lsi05G013670	Cucurbita maxima (Rimu)	cmalsiB765
Lsi05G013670	Watermelon (Charleston Gray)	lsiwcgB336