Carg24781 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24781
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rapid ALkalinization Factor
Location	Cucurbita_argyrosperma_scaffold_212 : 14555 .. 14890 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACAAGAATCTCAAAATCTTGCTTTCTTCTCTTTCTCCTCCTCGTTCAAGATCTTTGTCTCGTTCGAGCTTCATCGAAGCACTCTTGCAATGGCTCGATAGCTGAGTGTGGTGGTGAAGAAGAGACGTTGATGGAGTCGGAGATAAGTCGAAGGTTTCTCGCACAGCAAAAGAAATATATCTCTATTGGAGCTTTGAAGAAGGATCACCCGGCTTGTGATGGCGGTGGTGGTGGTCAACCTTACACTAGAAGTGGAAGCTGCGCTCCGCCGCCAGCTAATCCTTACAATCGAGGCTGCTCTAAGATATATCGTTGTAGGTCTGACGATTGA

mRNA sequence

ATGACAACAAGAATCTCAAAATCTTGCTTTCTTCTCTTTCTCCTCCTCGTTCAAGATCTTTGTCTCGTTCGAGCTTCATCGAAGCACTCTTGCAATGGCTCGATAGCTGAGTGTGGTGGTGAAGAAGAGACGTTGATGGAGTCGGAGATAAGTCGAAGGTTTCTCGCACAGCAAAAGAAATATATCTCTATTGGAGCTTTGAAGAAGGATCACCCGGCTTGTGATGGCGGTGGTGGTGGTCAACCTTACACTAGAAGTGGAAGCTGCGCTCCGCCGCCAGCTAATCCTTACAATCGAGGCTGCTCTAAGATATATCGTTGTAGGTCTGACGATTGA

Coding sequence (CDS)

ATGACAACAAGAATCTCAAAATCTTGCTTTCTTCTCTTTCTCCTCCTCGTTCAAGATCTTTGTCTCGTTCGAGCTTCATCGAAGCACTCTTGCAATGGCTCGATAGCTGAGTGTGGTGGTGAAGAAGAGACGTTGATGGAGTCGGAGATAAGTCGAAGGTTTCTCGCACAGCAAAAGAAATATATCTCTATTGGAGCTTTGAAGAAGGATCACCCGGCTTGTGATGGCGGTGGTGGTGGTCAACCTTACACTAGAAGTGGAAGCTGCGCTCCGCCGCCAGCTAATCCTTACAATCGAGGCTGCTCTAAGATATATCGTTGTAGGTCTGACGATTGA

Protein sequence

MTTRISKSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLAQQKKYISIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD

Homology

[Close]

BLAST of Carg24781 vs. NCBI nr
Match: XP_023528073.1 (protein RALF-like 32 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 7.0e-57
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MTTRISKSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLAQQKK 60
           MTTRISKSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFL QQKK
Sbjct: 1   MTTRISKSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLEQQKK 60

Query: 61  YISIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 112
           YISIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD
Sbjct: 61  YISIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 111

[Close]

BLAST of Carg24781 vs. NCBI nr
Match: XP_022956250.1 (protein RALF-like 32 [Cucurbita moschata])

HSP 1 Score: 226.9 bits (577), Expect = 3.5e-56
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MTTRISKSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLAQQKK 60
           MTTRI KSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGE+ETLMESEISRRFLAQQKK
Sbjct: 1   MTTRIPKSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGEDETLMESEISRRFLAQQKK 60

Query: 61  YISIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 112
           YISIGALKKDHPACDGGGGGQPYT+SGSCAPPPANPYNRGCSKIYRCRSDD
Sbjct: 61  YISIGALKKDHPACDGGGGGQPYTKSGSCAPPPANPYNRGCSKIYRCRSDD 111

[Close]

BLAST of Carg24781 vs. NCBI nr
Match: XP_004147646.2 (PREDICTED: protein RALF-like 32 [Cucumis sativus] >KGN57227.1 hypothetical protein Csa_3G171840 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 4.8e-42
Identity = 84/93 (90.32%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 19  DLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLAQQKKYISIGALKKDHPACDGGG 78
           DLCLVRASS HSCNGSIA C  EEE LMESEI+RRFL QQKKYISIGALKKDHPACDG  
Sbjct: 36  DLCLVRASSTHSCNGSIAACANEEEMLMESEITRRFLEQQKKYISIGALKKDHPACDGAS 95

Query: 79  GGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 112
           GGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD
Sbjct: 96  GGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 128

[Close]

BLAST of Carg24781 vs. NCBI nr
Match: XP_022138047.1 (protein RALF-like 32 [Momordica charantia])

HSP 1 Score: 169.9 bits (429), Expect = 5.0e-39
Identity = 82/106 (77.36%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 6   SKSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLAQQKKYISIG 65
           S+  FLL L L+Q LCL+RAS    CNGSIAEC  E+E LMESEISRRFL QQKKYISIG
Sbjct: 12  SQPFFLLLLFLLQALCLLRASFASPCNGSIAECNTEKEMLMESEISRRFLEQQKKYISIG 71

Query: 66  ALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 112
           ALKKD PACDG G GQPYT+SGSC PPP+NPY+RGCSKIYRCRSDD
Sbjct: 72  ALKKDRPACDGSGRGQPYTKSGSCVPPPSNPYDRGCSKIYRCRSDD 117

[Close]

BLAST of Carg24781 vs. NCBI nr
Match: KGN57228.1 (hypothetical protein Csa_3G171850 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 5.2e-28
Identity = 71/98 (72.45%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 7   KSCFLLFL---LLVQDLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLAQQKK-YI 66
           ++CFLL L    L+QDLCLVR SS HSCNGSIAEC  EEE LMESEI+RRFLAQQKK YI
Sbjct: 4   QTCFLLLLFLSFLLQDLCLVRGSSMHSCNGSIAECANEEEMLMESEITRRFLAQQKKNYI 63

Query: 67  SIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRG 101
           S   LKKD PACD G  GQPYT+SGSC P  ANPYN G
Sbjct: 64  SYPTLKKDRPACD-GASGQPYTKSGSCVPSQANPYNPG 100

[Close]

BLAST of Carg24781 vs. TAIR10
Match: AT4G14010.1 (ralf-like 32)

HSP 1 Score: 94.4 bits (233), Expect = 4.9e-20
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 3   TRISKSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGEEET-----LMESEISRRFLAQ 62
           +RI  +  + FL L+      +ASS   CNGS+AEC    ET     +MES  S+R   +
Sbjct: 6   SRIFSTITIFFLCLLLAHVTSKASSSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEE 65

Query: 63  QKKYISIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 111
           Q   +S GAL+++ PACDGG  G+ Y  S  C PPP+NPY+RGCSK YRC  D
Sbjct: 66  QAHKLSYGALRRNQPACDGGKRGESY--STQCLPPPSNPYSRGCSKHYRCGRD 116

[Close]

BLAST of Carg24781 vs. TAIR10
Match: AT1G02900.1 (rapid alkalinization factor 1)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-13
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 31  CNGSIAECGGEEETLMESEISRRFLAQQKKYISIGALKKDHPACDGGGGGQPYTRSGSCA 90
           C+GSIAEC G EE  M+SEI+RR LA   KYIS  +LK++   C   G      ++G+  
Sbjct: 47  CHGSIAECIGAEEEEMDSEINRRILA-TTKYISYQSLKRNSVPCSRRGASYYNCQNGA-- 106

Query: 91  PPPANPYNRGCSKIYRCRS 110
              ANPY+RGCSKI RCRS
Sbjct: 107 --QANPYSRGCSKIARCRS 120

[Close]

BLAST of Carg24781 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-12
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 20  LCLVRASSK---HSCNGSIAECGGEEETL-MESEISRRFLAQQKKYISIGALKKDHPACD 79
           L  VRA S      C GSIAEC  EEE +  +S+ISRR LA QKKYIS GA++++   C 
Sbjct: 31  LDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRILA-QKKYISYGAMRRNSVPCS 90

Query: 80  GGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCR 109
             G      + G+     ANPY+RGCS I RCR
Sbjct: 91  RRGASYYNCQRGA----QANPYSRGCSTITRCR 118

[Close]

BLAST of Carg24781 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-12
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 31  CNGSIAECG---GEEETLMESEISRRFLAQQKKYISIGALKKDHPACDGGGGGQPYTRSG 90
           CNG+IAEC     EEE  M+SEI+RR LA   KYIS GAL+++   C   G      R G
Sbjct: 40  CNGTIAECSLSTAEEEFEMDSEINRRILA-TTKYISYGALRRNTVPCSRRGASYYNCRRG 99

Query: 91  SCAPPPANPYNRGCSKIYRCR 109
           +     ANPY+RGCS I RCR
Sbjct: 100 A----QANPYSRGCSAITRCR 115

[Close]

BLAST of Carg24781 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 41/95 (43.16%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 31  CNGSIAEC---------------GGE--EETLMESEISRRFLAQQKKYISIGALKKDHPA 90
           C G+IAEC               GGE  EE  M+SEI+RR LA  ++YIS GAL+++   
Sbjct: 47  CRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILA-TRRYISYGALRRNTIP 106

Query: 91  CDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCR 109
           C   G      R G+     ANPY+RGCS I RCR
Sbjct: 107 CSRRGASYYNCRRGA----QANPYSRGCSAITRCR 136

[Close]

BLAST of Carg24781 vs. Swiss-Prot
Match: sp|O23262|RLF32_ARATH (Protein RALF-like 32 OS=Arabidopsis thaliana OX=3702 GN=RALFL32 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.7e-19
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 3   TRISKSCFLLFLLLVQDLCLVRASSKHSCNGSIAECGGEEET-----LMESEISRRFLAQ 62
           +RI  +  + FL L+      +ASS   CNGS+AEC    ET     +MES  S+R   +
Sbjct: 6   SRIFSTITIFFLCLLLAHVTSKASSSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEE 65

Query: 63  QKKYISIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 111
           Q   +S GAL+++ PACDGG  G+ Y  S  C PPP+NPY+RGCSK YRC  D
Sbjct: 66  QAHKLSYGALRRNQPACDGGKRGESY--STQCLPPPSNPYSRGCSKHYRCGRD 116

[Close]

BLAST of Carg24781 vs. Swiss-Prot
Match: sp|Q9SRY3|RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.9e-12
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 31  CNGSIAECGGEEETLMESEISRRFLAQQKKYISIGALKKDHPACDGGGGGQPYTRSGSCA 90
           C+GSIAEC G EE  M+SEI+RR LA   KYIS  +LK++   C   G      ++G+  
Sbjct: 47  CHGSIAECIGAEEEEMDSEINRRILA-TTKYISYQSLKRNSVPCSRRGASYYNCQNGA-- 106

Query: 91  PPPANPYNRGCSKIYRCRS 110
              ANPY+RGCSKI RCRS
Sbjct: 107 --QANPYSRGCSKIARCRS 120

[Close]

BLAST of Carg24781 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-11
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 20  LCLVRASSK---HSCNGSIAECGGEEETL-MESEISRRFLAQQKKYISIGALKKDHPACD 79
           L  VRA S      C GSIAEC  EEE +  +S+ISRR LA QKKYIS GA++++   C 
Sbjct: 31  LDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRILA-QKKYISYGAMRRNSVPCS 90

Query: 80  GGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCR 109
             G      + G+     ANPY+RGCS I RCR
Sbjct: 91  RRGASYYNCQRGA----QANPYSRGCSTITRCR 118

[Close]

BLAST of Carg24781 vs. Swiss-Prot
Match: sp|Q945T0|RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-10
Identity = 42/86 (48.84%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 25  ASSKHSCNGSIAECGGEEETL-MESEISRRFLAQQKKYISIGALKKDHPACDGGGGGQPY 84
           A S   C GSI EC  EEE   ++SE +RR LA  KKYIS GAL+K+   C   G     
Sbjct: 35  ARSGGGCKGSIGECIAEEEEFELDSESNRRILA-TKKYISYGALQKNSVPCSRRGASYYN 94

Query: 85  TRSGSCAPPPANPYNRGCSKIYRCRS 110
            + G+     ANPY+RGCS I RCRS
Sbjct: 95  CKPGA----QANPYSRGCSAITRCRS 115

[Close]

BLAST of Carg24781 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-10
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 31  CNGSIAECG---GEEETLMESEISRRFLAQQKKYISIGALKKDHPACDGGGGGQPYTRSG 90
           CNG+IAEC     EEE  M+SEI+RR LA   KYIS GAL+++   C   G      R G
Sbjct: 40  CNGTIAECSLSTAEEEFEMDSEINRRILA-TTKYISYGALRRNTVPCSRRGASYYNCRRG 99

Query: 91  SCAPPPANPYNRGCSKIYRCR 109
           +     ANPY+RGCS I RCR
Sbjct: 100 A----QANPYSRGCSAITRCR 115

[Close]

BLAST of Carg24781 vs. TrEMBL
Match: tr|A0A0A0L9A8|A0A0A0L9A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171840 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-42
Identity = 84/93 (90.32%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 19  DLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLAQQKKYISIGALKKDHPACDGGG 78
           DLCLVRASS HSCNGSIA C  EEE LMESEI+RRFL QQKKYISIGALKKDHPACDG  
Sbjct: 36  DLCLVRASSTHSCNGSIAACANEEEMLMESEITRRFLEQQKKYISIGALKKDHPACDGAS 95

Query: 79  GGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 112
           GGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD
Sbjct: 96  GGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 128

[Close]

BLAST of Carg24781 vs. TrEMBL
Match: tr|A0A0A0L624|A0A0A0L624_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171850 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.4e-28
Identity = 71/98 (72.45%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 7   KSCFLLFL---LLVQDLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLAQQKK-YI 66
           ++CFLL L    L+QDLCLVR SS HSCNGSIAEC  EEE LMESEI+RRFLAQQKK YI
Sbjct: 4   QTCFLLLLFLSFLLQDLCLVRGSSMHSCNGSIAECANEEEMLMESEITRRFLAQQKKNYI 63

Query: 67  SIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRG 101
           S   LKKD PACD G  GQPYT+SGSC P  ANPYN G
Sbjct: 64  SYPTLKKDRPACD-GASGQPYTKSGSCVPSQANPYNPG 100

[Close]

BLAST of Carg24781 vs. TrEMBL
Match: tr|A0A2P6QW25|A0A2P6QW25_ROSCH (Putative rapid ALkalinization Factor OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0413341 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 66/105 (62.86%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 7   KSCFLLFLLLVQDLCLVRA-SSKHSCNGSIAECGGEEETLMESEISRRFLAQQKKYISIG 66
           +SCF+L LL +  L    +  S  +CNGSIAEC  E E LM+SEISRRFLAQ  KYIS G
Sbjct: 5   QSCFVLLLLCLSYLSATASPPSSSTCNGSIAECETESELLMDSEISRRFLAQ--KYISPG 64

Query: 67  ALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 111
           AL+KD P C+GG  G+ Y+++G C PPPANPYNRGCSK YRCRSD
Sbjct: 65  ALRKDQPVCNGGARGEAYSKTGGCLPPPANPYNRGCSKYYRCRSD 107

[Close]

BLAST of Carg24781 vs. TrEMBL
Match: tr|C6T1A5|C6T1A5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500295 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-27
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 2   TTRISKSC-FLLFLLLVQDLCLVRASSKH--SCNGSIAECGGEEETLMESEISRRFLAQQ 61
           T R+   C F+LF  +    C V +   H  +CNGSIAEC  E+E LMESEISRRFL Q+
Sbjct: 7   TIRLLCFCYFMLFSFMHFSSCTVFSLKSHASTCNGSIAECNQEDELLMESEISRRFLEQK 66

Query: 62  KKYISIGALKKDHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 111
           + YIS GAL++D P C+GGG G+ Y+++G C PPP+NP NRGCSK YRCRSD
Sbjct: 67  RSYISNGALQRDKPVCNGGGSGEAYSKTGGCLPPPSNPQNRGCSKYYRCRSD 118

[Close]

BLAST of Carg24781 vs. TrEMBL
Match: tr|A0A1S4C7B1|A0A1S4C7B1_TOBAC (protein RALF-like 32 OS=Nicotiana tabacum OX=4097 GN=LOC107815898 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.0e-27
Identity = 63/101 (62.38%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 10  FLLFLLLVQDLCLVRASSKHSCNGSIAECGGEEETLMESEISRRFLAQQKKYISIGALKK 69
           F LFL L+    +   + +  CNG+IAEC  E E LMES+ISRRFL ++KKYIS GALK+
Sbjct: 13  FTLFLTLL--FIITSVTGQSPCNGTIAECNEELEILMESDISRRFLEERKKYISPGALKR 72

Query: 70  DHPACDGGGGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 111
           D P C+GGGGG+PY+R  SC PPP+NPYNRGCSK YRCR D
Sbjct: 73  DQPVCNGGGGGEPYSR--SCLPPPSNPYNRGCSKYYRCRGD 109

The following BLAST results are available for this feature:

BLAST of Carg24781 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528073.1	7.0e-57	99.10	protein RALF-like 32 [Cucurbita pepo subsp. pepo]	[more]
XP_022956250.1	3.5e-56	97.30	protein RALF-like 32 [Cucurbita moschata]	[more]
XP_004147646.2	4.8e-42	90.32	PREDICTED: protein RALF-like 32 [Cucumis sativus] >KGN57227.1 hypothetical prote...	[more]
XP_022138047.1	5.0e-39	77.36	protein RALF-like 32 [Momordica charantia]	[more]
KGN57228.1	5.2e-28	72.45	hypothetical protein Csa_3G171850 [Cucumis sativus]	[more]

BLAST of Carg24781 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14010.1	4.9e-20	46.02	ralf-like 32	[more]
AT1G02900.1	4.4e-13	51.90	rapid alkalinization factor 1	[more]
AT3G05490.1	1.3e-12	48.39	ralf-like 22	[more]
AT4G15800.1	6.3e-12	50.62	ralf-like 33	[more]
AT3G16570.1	1.3e-09	43.16	rapid alkalinization factor 23	[more]

BLAST of Carg24781 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23262\|RLF32_ARATH	8.7e-19	46.02	Protein RALF-like 32 OS=Arabidopsis thaliana OX=3702 GN=RALFL32 PE=3 SV=1	[more]
sp\|Q9SRY3\|RLF1_ARATH	7.9e-12	51.90	Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1	[more]
sp\|Q9MA62\|RLF22_ARATH	2.3e-11	48.39	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]
sp\|Q945T0\|RALF_TOBAC	1.1e-10	48.84	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
sp\|Q8L9P8\|RLF33_ARATH	1.1e-10	50.62	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]

BLAST of Carg24781 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9A8\|A0A0A0L9A8_CUCSA	3.2e-42	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171840 PE=4 SV=1	[more]
tr\|A0A0A0L624\|A0A0A0L624_CUCSA	3.4e-28	72.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171850 PE=4 SV=1	[more]
tr\|A0A2P6QW25\|A0A2P6QW25_ROSCH	1.3e-27	62.86	Putative rapid ALkalinization Factor OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4...	[more]
tr\|C6T1A5\|C6T1A5_SOYBN	2.9e-27	57.14	Uncharacterized protein OS=Glycine max OX=3847 GN=100500295 PE=2 SV=1	[more]
tr\|A0A1S4C7B1\|A0A1S4C7B1_TOBAC	5.0e-27	62.38	protein RALF-like 32 OS=Nicotiana tabacum OX=4097 GN=LOC107815898 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24781-RA	Carg24781-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 42..108 e-value: 1.3E-24 score: 86.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..97
None	No IPR available	PANTHER	PTHR33136:SF3	PROTEIN RALF-LIKE 32	coord: 7..110
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 7..110

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24781	Cla021850	Watermelon (97103) v1	carwmB1043
Carg24781	Csa3G171840	Cucumber (Chinese Long) v2	carcuB1054
Carg24781	MELO3C006773	Melon (DHL92) v3.5.1	carmeB1008
Carg24781	CSPI03G15560	Wild cucumber (PI 183967)	carcpiB1076
Carg24781	Cucsa.251990	Cucumber (Gy14) v1	carcgyB1157
Carg24781	CmaCh14G015430	Cucurbita maxima (Rimu)	carcmaB1439
Carg24781	CmoCh06G015950	Cucurbita moschata (Rifu)	carcmoB1394
Carg24781	CmoCh14G015780	Cucurbita moschata (Rifu)	carcmoB1393
Carg24781	Lsi05G013670	Bottle gourd (USVL1VR-Ls)	carlsiB951
Carg24781	Cp4.1LG08g05550	Cucurbita pepo (Zucchini)	carcpeB1447
Carg24781	Cp4.1LG03g12260	Cucurbita pepo (Zucchini)	carcpeB1446
Carg24781	CsGy3G015610	Cucumber (Gy14) v2	carcgybB1023
Carg24781	MELO3C006773.2	Melon (DHL92) v3.6.1	carmedB1020
Carg24781	CsaV3_3G015740	Cucumber (Chinese Long) v3	carcucB1087
Carg24781	Cla97C05G088730	Watermelon (97103) v2	carwmbB1100
Carg24781	Bhi01G000843	Wax gourd	carwgoB1220

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24781	Carg15515	Silver-seed gourd	carcarB579

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24781	Watermelon (Charleston Gray)	carwcgB1014