Csa3G171840 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G171840
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Rapid alkalinization factor; contains IPR008801 (Rapid ALkalinization Factor)
Location	Chr3 : 11504033 .. 11504535 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATATCTATAAAGTTTCTTCCCATTAGTAAAGAAATAAGGCAAAAGAGAAAAGAAGTATGGAAAGTCAGAATAACAACACGAGAAAAAGAATCTCAAGCAAGCCAATGTCTTTACAGACTTGCTTTCTTCTTCTTCTCTTTCTCTTCCTCTTCCTCTTTCAAGATCTTTGTCTCGTTCGAGCTTCCTCCACACATTCTTGCAATGGCTCCATAGCCGCGTGTGCTAACGAGGAGGAGATGTTGATGGAGTCAGAGATAACTCGAAGGTTTCTCGAACAACAAAAGAAATACATCTCTATTGGAGCTTTAAAGAAGGATCACCCCGCTTGCGATGGCGCTAGTGGTGGCCAACCTTACACCAGAAGTGGAAGTTGTGCTCCGCCACCGGCTAATCCTTACAATCGAGGTTGCTCTAAGATATATCGTTGTAGGTCTGATGATTGAAGGTTTGATCAAACCATTGTATGGTTCATAGAATTTCTTCCTTTTTTCCTTTTCTC

mRNA sequence

ATGGAAAGTCAGAATAACAACACGAGAAAAAGAATCTCAAGCAAGCCAATGTCTTTACAGACTTGCTTTCTTCTTCTTCTCTTTCTCTTCCTCTTCCTCTTTCAAGATCTTTGTCTCGTTCGAGCTTCCTCCACACATTCTTGCAATGGCTCCATAGCCGCGTGTGCTAACGAGGAGGAGATGTTGATGGAGTCAGAGATAACTCGAAGGTTTCTCGAACAACAAAAGAAATACATCTCTATTGGAGCTTTAAAGAAGGATCACCCCGCTTGCGATGGCGCTAGTGGTGGCCAACCTTACACCAGAAGTGGAAGTTGTGCTCCGCCACCGGCTAATCCTTACAATCGAGGTTGCTCTAAGATATATCGTTGTAGGTCTGATGATTGA

Coding sequence (CDS)

ATGGAAAGTCAGAATAACAACACGAGAAAAAGAATCTCAAGCAAGCCAATGTCTTTACAGACTTGCTTTCTTCTTCTTCTCTTTCTCTTCCTCTTCCTCTTTCAAGATCTTTGTCTCGTTCGAGCTTCCTCCACACATTCTTGCAATGGCTCCATAGCCGCGTGTGCTAACGAGGAGGAGATGTTGATGGAGTCAGAGATAACTCGAAGGTTTCTCGAACAACAAAAGAAATACATCTCTATTGGAGCTTTAAAGAAGGATCACCCCGCTTGCGATGGCGCTAGTGGTGGCCAACCTTACACCAGAAGTGGAAGTTGTGCTCCGCCACCGGCTAATCCTTACAATCGAGGTTGCTCTAAGATATATCGTTGTAGGTCTGATGATTGA

Protein sequence

MESQNNNTRKRISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEEMLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD*

Homology

[Close]

BLAST of Csa3G171840 vs. Swiss-Prot
Match: RLF32_ARATH (Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-18
Identity = 48/110 (43.64%), Postives = 64/110 (58.18%), Query Frame = 1


Query: 23  FLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACAN-----EEEMLMESEITRRFLEQQKK 82
           F  +   FL L       +ASS+  CNGS+A C++     E  ++MES  ++R  E+Q  
Sbjct: 9   FSTITIFFLCLLLAHVTSKASSSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAH 68

Query: 83  YISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 128
            +S GAL+++ PACDG   G+ Y  S  C PPP+NPY+RGCSK YRC  D
Sbjct: 69  KLSYGALRRNQPACDGGKRGESY--STQCLPPPSNPYSRGCSKHYRCGRD 116

[Close]

BLAST of Csa3G171840 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-10
Identity = 45/117 (38.46%), Postives = 58/117 (49.57%), Query Frame = 1


Query: 12  ISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACA---NEEEMLMESEIT 71
           +S+KP+++    L + FLF  +              CNG+IA C+    EEE  M+SEI 
Sbjct: 4   LSTKPVAIIIAILTVHFLFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEEEFEMDSEIN 63

Query: 72  RRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCR 126
           RR L    KYIS GAL+++   C          R G+     ANPY+RGCS I RCR
Sbjct: 64  RRILATT-KYISYGALRRNTVPCSRRGASYYNCRRGA----QANPYSRGCSAITRCR 115

[Close]

BLAST of Csa3G171840 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 43/93 (46.24%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 37  LCLVRASSTH---SCNGSIAAC-ANEEEMLMESEITRRFLEQQKKYISIGALKKDHPACD 96
           L  VRA S+     C GSIA C A EEEM  +S+I+RR L  QKKYIS GA++++   C 
Sbjct: 31  LDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRIL-AQKKYISYGAMRRNSVPCS 90

Query: 97  GASGGQPYTRSGSCAPPPANPYNRGCSKIYRCR 126
                    + G+     ANPY+RGCS I RCR
Sbjct: 91  RRGASYYNCQRGA----QANPYSRGCSTITRCR 118

[Close]

BLAST of Csa3G171840 vs. Swiss-Prot
Match: RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.5e-10
Identity = 47/120 (39.17%), Postives = 58/120 (48.33%), Query Frame = 1


Query: 21  TCFLLLLFLFLFLFQ----------DLCLVRASST----HSCNGSIAACANEEEMLMESE 80
           T FL L  L +F+            DL  V  ++T      C+GSIA C   EE  M+SE
Sbjct: 6   TLFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAEEEEMDSE 65

Query: 81  ITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRS 127
           I RR L   K YIS  +LK++   C          ++G+     ANPY+RGCSKI RCRS
Sbjct: 66  INRRILATTK-YISYQSLKRNSVPCSRRGASYYNCQNGA----QANPYSRGCSKIARCRS 120

[Close]

BLAST of Csa3G171840 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 43/87 (49.43%), Postives = 47/87 (54.02%), Query Frame = 1


Query: 42  ASSTHSCNGSIAAC-ANEEEMLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPY 101
           A S   C GSI  C A EEE  ++SE  RR L   KKYIS GAL+K+   C    G   Y
Sbjct: 35  ARSGGGCKGSIGECIAEEEEFELDSESNRRILAT-KKYISYGALQKNSVPC-SRRGASYY 94

Query: 102 TRSGSCAP-PPANPYNRGCSKIYRCRS 127
               +C P   ANPY+RGCS I RCRS
Sbjct: 95  ----NCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of Csa3G171840 vs. TrEMBL
Match: A0A0A0L9A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-68
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MESQNNNTRKRISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEE 60
           MESQNNNTRKRISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEE
Sbjct: 1   MESQNNNTRKRISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEE 60

Query: 61  MLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSK 120
           MLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSK
Sbjct: 61  MLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSK 120

Query: 121 IYRCRSDD 129
           IYRCRSDD
Sbjct: 121 IYRCRSDD 128

[Close]

BLAST of Csa3G171840 vs. TrEMBL
Match: A0A0A0L624_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171850 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.8e-36
Identity = 84/102 (82.35%), Postives = 85/102 (83.33%), Query Frame = 1


Query: 17  MSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEEMLMESEITRRFLEQQK 76
           MSLQTCFLLLLFL  FL QDLCLVR SS HSCNGSIA CANEEEMLMESEITRRFL QQK
Sbjct: 1   MSLQTCFLLLLFLS-FLLQDLCLVRGSSMHSCNGSIAECANEEEMLMESEITRRFLAQQK 60

Query: 77  K-YISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRG 118
           K YIS   LKKD PACDGAS GQPYT+SGSC P  ANPYN G
Sbjct: 61  KNYISYPTLKKDRPACDGAS-GQPYTKSGSCVPSQANPYNPG 100

[Close]

BLAST of Csa3G171840 vs. TrEMBL
Match: A0A0S3R1D3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G214200 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.7e-29
Identity = 66/119 (55.46%), Postives = 88/119 (73.95%), Query Frame = 1


Query: 12  ISSKPMSL-QTCFLLLLFLFLFLFQDLCLVRASSTH--SCNGSIAACANEEEMLMESEIT 71
           ++SKP ++ + CF+ L+F F F+    C V + ++H  +CNGSIA C  E+E+LMESE +
Sbjct: 1   MASKPSTIVRLCFIYLIF-FSFMRLSSCTVLSLTSHVSTCNGSIAECNQEDELLMESETS 60

Query: 72  RRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 128
           RRFLEQ KKYIS GAL++D P C+G   G+ Y+ SG C PPP+NP+NRGCSK YRCRSD
Sbjct: 61  RRFLEQ-KKYISNGALQRDKPVCNGGGSGEAYSNSGGCLPPPSNPHNRGCSKYYRCRSD 117

[Close]

BLAST of Csa3G171840 vs. TrEMBL
Match: V7C8L1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G051400g PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 1


Query: 12  ISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTH--SCNGSIAACANEEEMLMESEITR 71
           +++KP +++ CF   + LF F+    C V + ++H   CNG+IA C  E+E+LMESEI+R
Sbjct: 1   MAAKPWTIRLCFFYFM-LFSFMHFSCCTVLSFTSHVGRCNGTIADCNQEDELLMESEISR 60

Query: 72  RFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 128
           RFLEQ K YIS GAL++D P C+G   G+ Y+ SG C PPP+NP+NRGCSK YRCRSD
Sbjct: 61  RFLEQ-KSYISNGALQRDKPVCNGGGSGEAYSNSGGCLPPPSNPHNRGCSKYYRCRSD 116

[Close]

BLAST of Csa3G171840 vs. TrEMBL
Match: B7FMN1_MEDTR (RALF OS=Medicago truncatula GN=MTR_8g083150 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.8e-28
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = 1


Query: 13  SSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHS--CNGSIAACANEEEMLMESEITRR 72
           S   + L T F  +LF F+ L   +  + ++  H+  CNGSIA C  E+E LMESEI+RR
Sbjct: 3   SKSTIKLLTFFYFMLFGFMNLSSTVISLSSNHHHASICNGSIAECNQEDEQLMESEISRR 62

Query: 73  FLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 128
           FLEQ ++YIS GALK+D P C+G +GG+ Y++S  C PPP+NPYNRGCSK YRCRSD
Sbjct: 63  FLEQ-RRYISEGALKRDKPVCNGGAGGEAYSKSAGCIPPPSNPYNRGCSKYYRCRSD 118

[Close]

BLAST of Csa3G171840 vs. TAIR10
Match: AT4G14010.1 (AT4G14010.1 ralf-like 32)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-19
Identity = 48/110 (43.64%), Postives = 64/110 (58.18%), Query Frame = 1


Query: 23  FLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACAN-----EEEMLMESEITRRFLEQQKK 82
           F  +   FL L       +ASS+  CNGS+A C++     E  ++MES  ++R  E+Q  
Sbjct: 9   FSTITIFFLCLLLAHVTSKASSSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAH 68

Query: 83  YISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 128
            +S GAL+++ PACDG   G+ Y  S  C PPP+NPY+RGCSK YRC  D
Sbjct: 69  KLSYGALRRNQPACDGGKRGESY--STQCLPPPSNPYSRGCSKHYRCGRD 116

[Close]

BLAST of Csa3G171840 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-12
Identity = 45/117 (38.46%), Postives = 58/117 (49.57%), Query Frame = 1


Query: 12  ISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACA---NEEEMLMESEIT 71
           +S+KP+++    L + FLF  +              CNG+IA C+    EEE  M+SEI 
Sbjct: 4   LSTKPVAIIIAILTVHFLFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEEEFEMDSEIN 63

Query: 72  RRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCR 126
           RR L    KYIS GAL+++   C          R G+     ANPY+RGCS I RCR
Sbjct: 64  RRILATT-KYISYGALRRNTVPCSRRGASYYNCRRGA----QANPYSRGCSAITRCR 115

[Close]

BLAST of Csa3G171840 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 67.4 bits (163), Expect = 7.4e-12
Identity = 43/93 (46.24%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 37  LCLVRASSTH---SCNGSIAAC-ANEEEMLMESEITRRFLEQQKKYISIGALKKDHPACD 96
           L  VRA S+     C GSIA C A EEEM  +S+I+RR L  QKKYIS GA++++   C 
Sbjct: 31  LDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDISRRIL-AQKKYISYGAMRRNSVPCS 90

Query: 97  GASGGQPYTRSGSCAPPPANPYNRGCSKIYRCR 126
                    + G+     ANPY+RGCS I RCR
Sbjct: 91  RRGASYYNCQRGA----QANPYSRGCSTITRCR 118

[Close]

BLAST of Csa3G171840 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-11
Identity = 47/120 (39.17%), Postives = 58/120 (48.33%), Query Frame = 1


Query: 21  TCFLLLLFLFLFLFQ----------DLCLVRASST----HSCNGSIAACANEEEMLMESE 80
           T FL L  L +F+            DL  V  ++T      C+GSIA C   EE  M+SE
Sbjct: 6   TLFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAEEEEMDSE 65

Query: 81  ITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRS 127
           I RR L   K YIS  +LK++   C          ++G+     ANPY+RGCSKI RCRS
Sbjct: 66  INRRILATTK-YISYQSLKRNSVPCSRRGASYYNCQNGA----QANPYSRGCSKIARCRS 120

[Close]

BLAST of Csa3G171840 vs. TAIR10
Match: AT4G13950.1 (AT4G13950.1 ralf-like 31)

HSP 1 Score: 54.3 bits (129), Expect = 6.5e-08
Identity = 41/109 (37.61%), Postives = 48/109 (44.04%), Query Frame = 1


Query: 25  LLLFLFLFLFQDLCLVRASSTHSCNGSIAACA------NEEEMLMESEITRRFLEQQKKY 84
           L++F  LFL   L    A    S NG I A         E+E LM +EI+RR L  QK+Y
Sbjct: 7   LVIFAILFL---LISADAFPIPSPNGEIDAMLIRNSIIGEDEDLMPTEISRRVLMAQKRY 66

Query: 85  ISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 128
           I    L++D   C          RSG      AN Y+RGC  I RC  D
Sbjct: 67  IGYETLRRDMVPCQKPGASYYDCRSGQ-----ANSYSRGCDTITRCARD 107

[Close]

BLAST of Csa3G171840 vs. NCBI nr
Match: gi|778679218|ref|XP_004147646.2| (PREDICTED: protein RALF-like 32 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.8e-68
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MESQNNNTRKRISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEE 60
           MESQNNNTRKRISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEE
Sbjct: 1   MESQNNNTRKRISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEE 60

Query: 61  MLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSK 120
           MLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSK
Sbjct: 61  MLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSK 120

Query: 121 IYRCRSDD 129
           IYRCRSDD
Sbjct: 121 IYRCRSDD 128

[Close]

BLAST of Csa3G171840 vs. NCBI nr
Match: gi|659077106|ref|XP_008439036.1| (PREDICTED: protein RALF-like 32 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 3.3e-54
Identity = 105/120 (87.50%), Postives = 113/120 (94.17%), Query Frame = 1


Query: 9   RKRISSKPMSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEEMLMESEIT 68
           R+RISSKPMSLQ CFLLLL LFLFL QDLCLVRASSTHSCNGSIA C +E+E+LMESEI+
Sbjct: 2   RRRISSKPMSLQPCFLLLL-LFLFLLQDLCLVRASSTHSCNGSIAECGSEDEILMESEIS 61

Query: 69  RRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSDD 128
           RRFL QQKKYISIGALKKDHPACDGASGG+PYT+SGSCAPPPANPY+RGC KIYRCRSDD
Sbjct: 62  RRFLAQQKKYISIGALKKDHPACDGASGGRPYTKSGSCAPPPANPYDRGCPKIYRCRSDD 120

[Close]

BLAST of Csa3G171840 vs. NCBI nr
Match: gi|700202095|gb|KGN57228.1| (hypothetical protein Csa_3G171850 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 6.9e-36
Identity = 84/102 (82.35%), Postives = 85/102 (83.33%), Query Frame = 1


Query: 17  MSLQTCFLLLLFLFLFLFQDLCLVRASSTHSCNGSIAACANEEEMLMESEITRRFLEQQK 76
           MSLQTCFLLLLFL  FL QDLCLVR SS HSCNGSIA CANEEEMLMESEITRRFL QQK
Sbjct: 1   MSLQTCFLLLLFLS-FLLQDLCLVRGSSMHSCNGSIAECANEEEMLMESEITRRFLAQQK 60

Query: 77  K-YISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRG 118
           K YIS   LKKD PACDGAS GQPYT+SGSC P  ANPYN G
Sbjct: 61  KNYISYPTLKKDRPACDGAS-GQPYTKSGSCVPSQANPYNPG 100

[Close]

BLAST of Csa3G171840 vs. NCBI nr
Match: gi|965658049|dbj|BAT74468.1| (hypothetical protein VIGAN_01214200 [Vigna angularis var. angularis])

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 66/119 (55.46%), Postives = 88/119 (73.95%), Query Frame = 1


Query: 12  ISSKPMSL-QTCFLLLLFLFLFLFQDLCLVRASSTH--SCNGSIAACANEEEMLMESEIT 71
           ++SKP ++ + CF+ L+F F F+    C V + ++H  +CNGSIA C  E+E+LMESE +
Sbjct: 1   MASKPSTIVRLCFIYLIF-FSFMRLSSCTVLSLTSHVSTCNGSIAECNQEDELLMESETS 60

Query: 72  RRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 128
           RRFLEQ KKYIS GAL++D P C+G   G+ Y+ SG C PPP+NP+NRGCSK YRCRSD
Sbjct: 61  RRFLEQ-KKYISNGALQRDKPVCNGGGSGEAYSNSGGCLPPPSNPHNRGCSKYYRCRSD 117

[Close]

BLAST of Csa3G171840 vs. NCBI nr
Match: gi|951070903|ref|XP_014490978.1| (PREDICTED: protein RALF-like 32 [Vigna radiata var. radiata])

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 1


Query: 12  ISSKPMSL-QTCFLLLLFLFLFLFQDLCLVRASSTH--SCNGSIAACANEEEMLMESEIT 71
           ++SKP ++ + CF  L+F F F+    C V + + H  +CNGSIA C  E+E+LMESEI+
Sbjct: 1   MASKPSTIIRLCFFYLMF-FGFMRLSSCTVLSLTPHVSTCNGSIAECNQEDELLMESEIS 60

Query: 72  RRFLEQQKKYISIGALKKDHPACDGASGGQPYTRSGSCAPPPANPYNRGCSKIYRCRSD 128
           RRFLEQ KKYIS GAL++D P C+G   G+ Y+ SG C PPP+NP+NRGCSK YRCRSD
Sbjct: 61  RRFLEQ-KKYISNGALQRDKPVCNGGGSGEAYSNSGGCLPPPSNPHNRGCSKYYRCRSD 117

The following BLAST results are available for this feature:

BLAST of Csa3G171840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF32_ARATH	2.2e-18	43.64	Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1	[more]
RLF33_ARATH	1.0e-10	38.46	Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1	[more]
RLF22_ARATH	1.3e-10	46.24	Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1	[more]
RLF1_ARATH	8.5e-10	39.17	Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1	[more]
RALF_TOBAC	1.1e-09	49.43	Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1	[more]

BLAST of Csa3G171840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A8_CUCSA	1.3e-68	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1	[more]
A0A0A0L624_CUCSA	4.8e-36	82.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171850 PE=4 SV=1	[more]
A0A0S3R1D3_PHAAN	9.7e-29	55.46	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G214200 PE=...	[more]
V7C8L1_PHAVU	2.2e-28	53.39	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G051400g PE=4 SV=1	[more]
B7FMN1_MEDTR	4.8e-28	54.70	RALF OS=Medicago truncatula GN=MTR_8g083150 PE=2 SV=1	[more]

BLAST of Csa3G171840 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14010.1	1.3e-19	43.64	ralf-like 32	[more]
AT4G15800.1	5.7e-12	38.46	ralf-like 33	[more]
AT3G05490.1	7.4e-12	46.24	ralf-like 22	[more]
AT1G02900.1	4.8e-11	39.17	rapid alkalinization factor 1	[more]
AT4G13950.1	6.5e-08	37.61	ralf-like 31	[more]

BLAST of Csa3G171840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679218\|ref\|XP_004147646.2\|	1.8e-68	100.00	PREDICTED: protein RALF-like 32 [Cucumis sativus]	[more]
gi\|659077106\|ref\|XP_008439036.1\|	3.3e-54	87.50	PREDICTED: protein RALF-like 32 [Cucumis melo]	[more]
gi\|700202095\|gb\|KGN57228.1\|	6.9e-36	82.35	hypothetical protein Csa_3G171850 [Cucumis sativus]	[more]
gi\|965658049\|dbj\|BAT74468.1\|	1.4e-28	55.46	hypothetical protein VIGAN_01214200 [Vigna angularis var. angularis]	[more]
gi\|951070903\|ref\|XP_014490978.1\|	1.8e-28	56.30	PREDICTED: protein RALF-like 32 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007154	cell communication
biological_process	GO:0044700	single organism signaling
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005179	hormone activity
molecular_function	GO:0004871	signal transducer activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU087134	cucumber EST collection version 3.0	transcribed_cluster
CU107607	cucumber EST collection version 3.0	transcribed_cluster
CU160356	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G171840.1	Csa3G171840.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU107607	CU107607	transcribed_cluster
CU087134	CU087134	transcribed_cluster
CU160356	CU160356	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 59..125 score: 1.0
None	No IPR available	unknown	Coil	Coil	coord: 55..75 scor
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 17..128 score: 1.1
None	No IPR available	PANTHER	PTHR33136:SF3	PROTEIN RALF-LIKE 32	coord: 17..128 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G171840	Cla021850	Watermelon (97103) v1	cuwmB233
Csa3G171840	MELO3C006773	Melon (DHL92) v3.5.1	cumeB236
Csa3G171840	Lsi05G013670	Bottle gourd (USVL1VR-Ls)	culsiB210
Csa3G171840	MELO3C006773.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G171840	Cla97C05G088730	Watermelon (97103) v2	cuwmbB204
Csa3G171840	Bhi01G000843	Wax gourd	cuwgoB269
Csa3G171840	CSPI03G15560	Wild cucumber (PI 183967)	cpicuB120
Csa3G171840	Cucsa.251990	Cucumber (Gy14) v1	cgycuB366
Csa3G171840	CmaCh14G015430	Cucurbita maxima (Rimu)	cmacuB253
Csa3G171840	CmoCh06G015950	Cucurbita moschata (Rifu)	cmocuB806
Csa3G171840	CmoCh14G015780	Cucurbita moschata (Rifu)	cmocuB239
Csa3G171840	Cp4.1LG03g12260	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G171840	Cp4.1LG08g05550	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G171840	CsGy3G015610	Cucumber (Gy14) v2	cgybcuB109
Csa3G171840	Carg24781	Silver-seed gourd	carcuB1054
Csa3G171840	Carg15515	Silver-seed gourd	carcuB0714

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G171840	Cucurbita maxima (Rimu)	cmacuB814
Csa3G171840	Watermelon (Charleston Gray)	cuwcgB222