CU087134 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU087134
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRalf-like 32
LocationChr3 : 11504191 .. 11504488 (-)
Sequence length251
The following sequences are available for this feature:

transcribed_cluster sequence

GAGAAAAGAAGTATGGAAAGTCAGAATAAACAACACGAGAAGAAGAATCTCAAGCAAGCCAATGTCTTTACAGACTTGCTTTCTTCTTCTTCTCTTTCTCTTCCTCTTCCTCTTCCTCTTTCAAGATCTTTGTCTAGTTCGAGGAGATGTTGATGGAGTCAGAGATAACTCGAAGGTTTCTCGAACAACAAAAGAAATACATCTCTATTGGAGCTTTAAAGAAGGATCACCCTGCTTGCGATGGCGCTAGT
BLAST of CU087134 vs. TrEMBL
Match: A0A0A0L9A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.1e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3

Query: 141 EEMLMESEITRRFLEQQKKYISIGALKKDHPACDGAS 200
           EEMLMESEITRRFLEQQKKYISIGALKKDHPACDGAS
Sbjct: 59  EEMLMESEITRRFLEQQKKYISIGALKKDHPACDGAS 95

Query: 201 252
           
Sbjct: 119 95

BLAST of CU087134 vs. TrEMBL
Match: A0A0A0L9A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1)

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-01
Identity = 23/38 (60.53%), Postives = 24/38 (63.16%), Query Frame = 2

Query: 29  NNTRRRISSKPMSLQTCXXXXXXXXXXXXXXQDLCLVR 88
           NNTR+RISSKPMSLQTC              QDLCLVR
Sbjct: 6   NNTRKRISSKPMSLQTC--FLLLLFLFLFLFQDLCLVR 41

Query: 89  143
           
Sbjct: 66  41


HSP 2 Score: 60.8 bits (146), Expect = 8.8e-07
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 3

Query: 141 EEMLMESEITRRFLEQQKK-YISIGALKKDHPACDGAS 200
           EEMLMESEITRRFL QQKK YIS   LKKD PACDGAS
Sbjct: 42  EEMLMESEITRRFLAQQKKNYISYPTLKKDRPACDGAS 79

Query: 201 252
           
Sbjct: 102 79

BLAST of CU087134 vs. NCBI nr
Match: gi|778679218|ref|XP_004147646.2| (PREDICTED: protein RALF-like 32 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3

Query: 141 EEMLMESEITRRFLEQQKKYISIGALKKDHPACDGAS 200
           EEMLMESEITRRFLEQQKKYISIGALKKDHPACDGAS
Sbjct: 59  EEMLMESEITRRFLEQQKKYISIGALKKDHPACDGAS 95

Query: 201 252
           
Sbjct: 119 95

BLAST of CU087134 vs. NCBI nr
Match: gi|659077106|ref|XP_008439036.1| (PREDICTED: protein RALF-like 32 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 9.3e-10
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 3

Query: 141 EEMLMESEITRRFLEQQKKYISIGALKKDHPACDGAS 200
           +E+LMESEI+RRFL QQKKYISIGALKKDHPACDGAS
Sbjct: 51  DEILMESEISRRFLAQQKKYISIGALKKDHPACDGAS 87

Query: 201 252
           
Sbjct: 111 87

BLAST of CU087134 vs. NCBI nr
Match: gi|700202095|gb|KGN57228.1| (hypothetical protein Csa_3G171850 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-07
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 3

Query: 141 EEMLMESEITRRFLEQQKK-YISIGALKKDHPACDGAS 200
           EEMLMESEITRRFL QQKK YIS   LKKD PACDGAS
Sbjct: 42  EEMLMESEITRRFLAQQKKNYISYPTLKKDRPACDGAS 79

Query: 201 252
           
Sbjct: 102 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L9A8_CUCSA9.1e-12100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1[more]
A0A0A0L9A8_CUCSA4.2e-0160.53Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778679218|ref|XP_004147646.2|1.0e-11100.00PREDICTED: protein RALF-like 32 [Cucumis sativus][more]
gi|659077106|ref|XP_008439036.1|9.3e-1089.19PREDICTED: protein RALF-like 32 [Cucumis melo][more]
gi|700202095|gb|KGN57228.1|9.6e-0784.21hypothetical protein Csa_3G171850 [Cucumis sativus][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G171840Csa3G171840gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MB5ZYFKNP3UI02MB5ZYEST
G0147218G0147218EST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 1..32
score: 4.8