Cp4.1LG08g05550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g05550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RALF
Location	Cp4.1LG08 : 800619 .. 800879 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGAGTTCTTGCAATGTCTCAATGGCCGAACATGGTAACGAAGAGGAGCTGTTAGTGCAATCTGAGATAGGTAGAAGGTTTCTCGAAGAACAAAAGAAATATATCTCCATTGGAGCTTTAAAGAAGGATATGATAGCTTTTGATGGTAGCAGCGGAGGCCAACCTTACACCAAAAGTGAAAATTGTGTTCCCCCACCTCTTAATCCGTACAACCGAGGCTGCTCTAAAATATCTCGTTGTAGGTCTGATGATTGA

mRNA sequence

ATGTCGATGAGTTCTTGCAATGTCTCAATGGCCGAACATGGTAACGAAGAGGAGCTGTTAGTGCAATCTGAGATAGGTAGAAGGTTTCTCGAAGAACAAAAGAAATATATCTCCATTGGAGCTTTAAAGAAGGATATGATAGCTTTTGATGGTAGCAGCGGAGGCCAACCTTACACCAAAAGTGAAAATTGTGTTCCCCCACCTCTTAATCCGTACAACCGAGGCTGCTCTAAAATATCTCGTTGTAGGTCTGATGATTGA

Coding sequence (CDS)

ATGTCGATGAGTTCTTGCAATGTCTCAATGGCCGAACATGGTAACGAAGAGGAGCTGTTAGTGCAATCTGAGATAGGTAGAAGGTTTCTCGAAGAACAAAAGAAATATATCTCCATTGGAGCTTTAAAGAAGGATATGATAGCTTTTGATGGTAGCAGCGGAGGCCAACCTTACACCAAAAGTGAAAATTGTGTTCCCCCACCTCTTAATCCGTACAACCGAGGCTGCTCTAAAATATCTCGTTGTAGGTCTGATGATTGA

Protein sequence

MSMSSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSENCVPPPLNPYNRGCSKISRCRSDD

Homology

[Close]

BLAST of Cp4.1LG08g05550 vs. Swiss-Prot
Match: RLF32_ARATH (Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 2   SMSSCNVSMAEHGN-----EEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQ 61
           S S CN S+AE  +     E  ++++S   +R  EEQ   +S GAL+++  A DG   G+
Sbjct: 30  SSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKLSYGALRRNQPACDGGKRGE 89

Query: 62  PYTKSENCVPPPLNPYNRGCSKISRCRSD 86
            Y  S  C+PPP NPY+RGCSK  RC  D
Sbjct: 90  SY--STQCLPPPSNPYSRGCSKHYRCGRD 116

[Close]

BLAST of Cp4.1LG08g05550 vs. Swiss-Prot
Match: RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-06
Identity = 36/81 (44.44%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 4   SSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSEN 63
           S C+ S+AE    EE  + SEI RR L   K YIS  +LK++ +    S  G  Y   +N
Sbjct: 45  SGCHGSIAECIGAEEEEMDSEINRRILATTK-YISYQSLKRNSVPC--SRRGASYYNCQN 104

Query: 64  CVPPPLNPYNRGCSKISRCRS 85
                 NPY+RGCSKI+RCRS
Sbjct: 105 GAQA--NPYSRGCSKIARCRS 120

[Close]

BLAST of Cp4.1LG08g05550 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-06
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 4   SSCNVSMAEH-GNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSE 63
           S C  S+AE    EEE+   S+I RR L  QKKYIS GA++++ +    S  G  Y   +
Sbjct: 43  SGCTGSIAECIAEEEEMEFDSDISRRILA-QKKYISYGAMRRNSVPC--SRRGASYYNCQ 102

Query: 64  NCVPPPLNPYNRGCSKISRCR 84
                  NPY+RGCS I+RCR
Sbjct: 103 RGAQA--NPYSRGCSTITRCR 118

[Close]

BLAST of Cp4.1LG08g05550 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.0e-06
Identity = 39/85 (45.88%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 2   SMSSCNVSMAEH-GNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTK 61
           S   C  S+ E    EEE  + SE  RR L   KKYIS GAL+K+ +    S  G  Y  
Sbjct: 37  SGGGCKGSIGECIAEEEEFELDSESNRRILAT-KKYISYGALQKNSVPC--SRRGASYY- 96

Query: 62  SENCVP-PPLNPYNRGCSKISRCRS 85
             NC P    NPY+RGCS I+RCRS
Sbjct: 97  --NCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of Cp4.1LG08g05550 vs. TrEMBL
Match: A0A0A0L9A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 9.3e-28
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 2   SMSSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKS 61
           S  SCN S+A   NEEE+L++SEI RRFLE+QKKYISIGALKKD  A DG+SGGQPYT+S
Sbjct: 44  STHSCNGSIAACANEEEMLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRS 103

Query: 62  ENCVPPPLNPYNRGCSKISRCRSDD 87
            +C PPP NPYNRGCSKI RCRSDD
Sbjct: 104 GSCAPPPANPYNRGCSKIYRCRSDD 128

[Close]

BLAST of Cp4.1LG08g05550 vs. TrEMBL
Match: I3RZ93_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-19
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 4   SSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSEN 63
           S+CN S+AE   E+ELL++SEI RRFLEE ++YIS GALK+D    +G + G+ Y+KS  
Sbjct: 32  STCNGSIAECNQEDELLMESEISRRFLEE-RRYISPGALKRDKPVCNGGASGEAYSKSGG 91

Query: 64  CVPPPLNPYNRGCSKISRCRSD 86
           C+PPP NPYNRGCSK  RCRSD
Sbjct: 92  CLPPPSNPYNRGCSKYYRCRSD 112

[Close]

BLAST of Cp4.1LG08g05550 vs. TrEMBL
Match: B7FMN1_MEDTR (RALF OS=Medicago truncatula GN=MTR_8g083150 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-19
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 4   SSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSEN 63
           S CN S+AE   E+E L++SEI RRFLE Q++YIS GALK+D    +G +GG+ Y+KS  
Sbjct: 38  SICNGSIAECNQEDEQLMESEISRRFLE-QRRYISEGALKRDKPVCNGGAGGEAYSKSAG 97

Query: 64  CVPPPLNPYNRGCSKISRCRSD 86
           C+PPP NPYNRGCSK  RCRSD
Sbjct: 98  CIPPPSNPYNRGCSKYYRCRSD 118

[Close]

BLAST of Cp4.1LG08g05550 vs. TrEMBL
Match: C6T1A5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G151400 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 4   SSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSEN 63
           S+CN S+AE   E+ELL++SEI RRFLE+++ YIS GAL++D    +G   G+ Y+K+  
Sbjct: 37  STCNGSIAECNQEDELLMESEISRRFLEQKRSYISNGALQRDKPVCNGGGSGEAYSKTGG 96

Query: 64  CVPPPLNPYNRGCSKISRCRSD 86
           C+PPP NP NRGCSK  RCRSD
Sbjct: 97  CLPPPSNPQNRGCSKYYRCRSD 118

[Close]

BLAST of Cp4.1LG08g05550 vs. TrEMBL
Match: A0A072TUW6_MEDTR (RALF OS=Medicago truncatula GN=MTR_8g083150 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 4   SSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSEN 63
           S CN S+AE   E+E L++SEI RRFLE Q++YIS GALK+D    +G +GG+ Y+KS  
Sbjct: 38  SICNGSIAECNQEDEQLMESEISRRFLE-QRRYISEGALKRDKPVCNGGAGGEAYSKSAG 97

Query: 64  CVPPPLNPYNRGCSKISRCR 84
           C+PPP NPYNRGCSK  RCR
Sbjct: 98  CIPPPSNPYNRGCSKYYRCR 116

[Close]

BLAST of Cp4.1LG08g05550 vs. TAIR10
Match: AT4G14010.1 (AT4G14010.1 ralf-like 32)

HSP 1 Score: 66.6 bits (161), Expect = 8.4e-12
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 2   SMSSCNVSMAEHGN-----EEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQ 61
           S S CN S+AE  +     E  ++++S   +R  EEQ   +S GAL+++  A DG   G+
Sbjct: 30  SSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKLSYGALRRNQPACDGGKRGE 89

Query: 62  PYTKSENCVPPPLNPYNRGCSKISRCRSD 86
            Y  S  C+PPP NPY+RGCSK  RC  D
Sbjct: 90  SY--STQCLPPPSNPYSRGCSKHYRCGRD 116

[Close]

BLAST of Cp4.1LG08g05550 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 36/81 (44.44%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 4   SSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSEN 63
           S C+ S+AE    EE  + SEI RR L   K YIS  +LK++ +    S  G  Y   +N
Sbjct: 45  SGCHGSIAECIGAEEEEMDSEINRRILATTK-YISYQSLKRNSVPC--SRRGASYYNCQN 104

Query: 64  CVPPPLNPYNRGCSKISRCRS 85
                 NPY+RGCSKI+RCRS
Sbjct: 105 GAQA--NPYSRGCSKIARCRS 120

[Close]

BLAST of Cp4.1LG08g05550 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 52.0 bits (123), Expect = 2.1e-07
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 4   SSCNVSMAEH-GNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSE 63
           S C  S+AE    EEE+   S+I RR L  QKKYIS GA++++ +    S  G  Y   +
Sbjct: 43  SGCTGSIAECIAEEEEMEFDSDISRRILA-QKKYISYGAMRRNSVPC--SRRGASYYNCQ 102

Query: 64  NCVPPPLNPYNRGCSKISRCR 84
                  NPY+RGCS I+RCR
Sbjct: 103 RGAQA--NPYSRGCSTITRCR 118

[Close]

BLAST of Cp4.1LG08g05550 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 48.1 bits (113), Expect = 3.1e-06
Identity = 35/83 (42.17%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 4   SSCNVSMAEHG---NEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTK 63
           S CN ++AE      EEE  + SEI RR L   K YIS GAL+++ +    S  G  Y  
Sbjct: 38  SKCNGTIAECSLSTAEEEFEMDSEINRRILATTK-YISYGALRRNTVPC--SRRGASYYN 97

Query: 64  SENCVPPPLNPYNRGCSKISRCR 84
                    NPY+RGCS I+RCR
Sbjct: 98  CRRGAQA--NPYSRGCSAITRCR 115

[Close]

BLAST of Cp4.1LG08g05550 vs. TAIR10
Match: AT4G13950.1 (AT4G13950.1 ralf-like 31)

HSP 1 Score: 47.8 bits (112), Expect = 4.0e-06
Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 1


Query: 16  EEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSENCVPPPLNPYNRG 75
           E+E L+ +EI RR L  QK+YI    L++DM+        +P     +C     N Y+RG
Sbjct: 43  EDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQ-----KPGASYYDCRSGQANSYSRG 102

Query: 76  CSKISRCRSD 86
           C  I+RC  D
Sbjct: 103 CDTITRCARD 107

[Close]

BLAST of Cp4.1LG08g05550 vs. NCBI nr
Match: gi|778679218|ref|XP_004147646.2| (PREDICTED: protein RALF-like 32 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 2   SMSSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKS 61
           S  SCN S+A   NEEE+L++SEI RRFLE+QKKYISIGALKKD  A DG+SGGQPYT+S
Sbjct: 44  STHSCNGSIAACANEEEMLMESEITRRFLEQQKKYISIGALKKDHPACDGASGGQPYTRS 103

Query: 62  ENCVPPPLNPYNRGCSKISRCRSDD 87
            +C PPP NPYNRGCSKI RCRSDD
Sbjct: 104 GSCAPPPANPYNRGCSKIYRCRSDD 128

[Close]

BLAST of Cp4.1LG08g05550 vs. NCBI nr
Match: gi|659077106|ref|XP_008439036.1| (PREDICTED: protein RALF-like 32 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 2   SMSSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKS 61
           S  SCN S+AE G+E+E+L++SEI RRFL +QKKYISIGALKKD  A DG+SGG+PYTKS
Sbjct: 36  STHSCNGSIAECGSEDEILMESEISRRFLAQQKKYISIGALKKDHPACDGASGGRPYTKS 95

Query: 62  ENCVPPPLNPYNRGCSKISRCRSDD 87
            +C PPP NPY+RGC KI RCRSDD
Sbjct: 96  GSCAPPPANPYDRGCPKIYRCRSDD 120

[Close]

BLAST of Cp4.1LG08g05550 vs. NCBI nr
Match: gi|357518655|ref|XP_003629616.1| (RALF [Medicago truncatula])

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-19
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 4   SSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSEN 63
           S CN S+AE   E+E L++SEI RRFLE Q++YIS GALK+D    +G +GG+ Y+KS  
Sbjct: 38  SICNGSIAECNQEDEQLMESEISRRFLE-QRRYISEGALKRDKPVCNGGAGGEAYSKSAG 97

Query: 64  CVPPPLNPYNRGCSKISRCRSD 86
           C+PPP NPYNRGCSK  RCRSD
Sbjct: 98  CIPPPSNPYNRGCSKYYRCRSD 118

[Close]

BLAST of Cp4.1LG08g05550 vs. NCBI nr
Match: gi|388490538|gb|AFK33335.1| (unknown [Lotus japonicus])

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-19
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 4   SSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSEN 63
           S+CN S+AE   E+ELL++SEI RRFLEE ++YIS GALK+D    +G + G+ Y+KS  
Sbjct: 32  STCNGSIAECNQEDELLMESEISRRFLEE-RRYISPGALKRDKPVCNGGASGEAYSKSGG 91

Query: 64  CVPPPLNPYNRGCSKISRCRSD 86
           C+PPP NPYNRGCSK  RCRSD
Sbjct: 92  CLPPPSNPYNRGCSKYYRCRSD 112

[Close]

BLAST of Cp4.1LG08g05550 vs. NCBI nr
Match: gi|697103835|ref|XP_009605720.1| (PREDICTED: protein RALF-like 32 [Nicotiana tomentosiformis])

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-19
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 4   SSCNVSMAEHGNEEELLVQSEIGRRFLEEQKKYISIGALKKDMIAFDGSSGGQPYTKSEN 63
           S CN ++AE   E E+L++S+I RRFLEE+KKYIS GALK+D    +G  GG+PY++S  
Sbjct: 30  SPCNGTIAECNEELEILMESDISRRFLEERKKYISPGALKRDQPVCNGGGGGEPYSRS-- 89

Query: 64  CVPPPLNPYNRGCSKISRCRSD 86
           C+PPP NPYNRGCSK  RCR D
Sbjct: 90  CLPPPSNPYNRGCSKYYRCRGD 109

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF32_ARATH	1.5e-10	42.70	Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1	[more]
RLF1_ARATH	2.9e-06	44.44	Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1	[more]
RLF22_ARATH	3.8e-06	43.21	Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1	[more]
RALF_TOBAC	5.0e-06	45.88	Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1	[more]

BLAST of Cp4.1LG08g05550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A8_CUCSA	9.3e-28	74.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171840 PE=4 SV=1	[more]
I3RZ93_LOTJA	1.6e-19	60.98	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
B7FMN1_MEDTR	1.6e-19	60.98	RALF OS=Medicago truncatula GN=MTR_8g083150 PE=2 SV=1	[more]
C6T1A5_SOYBN	1.4e-18	56.10	Uncharacterized protein OS=Glycine max GN=GLYMA_05G151400 PE=2 SV=1	[more]
A0A072TUW6_MEDTR	2.3e-18	60.00	RALF OS=Medicago truncatula GN=MTR_8g083150 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g05550 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14010.1	8.4e-12	42.70	ralf-like 32	[more]
AT1G02900.1	1.6e-07	44.44	rapid alkalinization factor 1	[more]
AT3G05490.1	2.1e-07	43.21	ralf-like 22	[more]
AT4G15800.1	3.1e-06	42.17	ralf-like 33	[more]
AT4G13950.1	4.0e-06	37.14	ralf-like 31	[more]

BLAST of Cp4.1LG08g05550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679218\|ref\|XP_004147646.2\|	1.3e-27	74.12	PREDICTED: protein RALF-like 32 [Cucumis sativus]	[more]
gi\|659077106\|ref\|XP_008439036.1\|	2.5e-26	70.59	PREDICTED: protein RALF-like 32 [Cucumis melo]	[more]
gi\|357518655\|ref\|XP_003629616.1\|	2.3e-19	60.98	RALF [Medicago truncatula]	[more]
gi\|388490538\|gb\|AFK33335.1\|	2.3e-19	60.98	unknown [Lotus japonicus]	[more]
gi\|697103835\|ref\|XP_009605720.1\|	2.3e-19	59.76	PREDICTED: protein RALF-like 32 [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007154	cell communication
biological_process	GO:0044700	single organism signaling
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005179	hormone activity
molecular_function	GO:0004871	signal transducer activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g05550.1	Cp4.1LG08g05550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 17..83 score: 1.0
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 1..86 score: 7.5
None	No IPR available	PANTHER	PTHR33136:SF3	PROTEIN RALF-LIKE 32	coord: 1..86 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g05550	Cucsa.251990	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g05550	CmaCh14G015430	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g05550	CmoCh06G015950	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g05550	CmoCh14G015780	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g05550	Cla021850	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g05550	Csa3G171840	Cucumber (Chinese Long) v2	cpecuB859
Cp4.1LG08g05550	MELO3C006773	Melon (DHL92) v3.5.1	cpemeB813
Cp4.1LG08g05550	CSPI03G15560	Wild cucumber (PI 183967)	cpecpiB861
Cp4.1LG08g05550	Lsi05G013670	Bottle gourd (USVL1VR-Ls)	cpelsiB715
Cp4.1LG08g05550	MELO3C006773.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g05550	CsaV3_3G015740	Cucumber (Chinese Long) v3	cpecucB1056
Cp4.1LG08g05550	Bhi01G000843	Wax gourd	cpewgoB1110
Cp4.1LG08g05550	CsGy3G015610	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g05550	Carg24781	Silver-seed gourd	carcpeB1447
Cp4.1LG08g05550	Carg15515	Silver-seed gourd	carcpeB0974

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g05550	Cp4.1LG03g12150	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g05550	Cucurbita maxima (Rimu)	cmacpeB412
Cp4.1LG08g05550	Cucurbita maxima (Rimu)	cmacpeB853
Cp4.1LG08g05550	Cucurbita moschata (Rifu)	cmocpeB373
Cp4.1LG08g05550	Bottle gourd (USVL1VR-Ls)	cpelsiB697
Cp4.1LG08g05550	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g05550	Watermelon (97103) v1	cpewmB853
Cp4.1LG08g05550	Melon (DHL92) v3.5.1	cpemeB793