Carg05815 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05815
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tetratricopeptide-like helical
Location	Cucurbita_argyrosperma_scaffold_033 : 1206433 .. 1206867 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGTGAACGACGTTCCTCCACATTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAAGTTTCTGGTCACTGAGTTGTAGCTTCTGCCATTCCAAAAAAAAAATCATAGAGATCAAAACTTTAAATTGCTTGAGCTTGAGGATCGAATGACTTTCCAATTTCAAGAGAGCCCTATGACAGTGGAATCAGTCGATAAAGGAAACCTTCGCATAAACAGAAAGAATTAGATCTCGAAAGAAGTTCGATACGTAACTTTTTAGTTCTTCAATTATAGCAACATTGAGTAAGATACAACAGTTCCAGTCCCACCGGTTTTCACTAGAGTGCCTTAAGTAG

mRNA sequence

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGTGAACGACGTTCCTCCACATTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAACAACATTGAGTAAGATACAACAGTTCCAGTCCCACCGGTTTTCACTAGAGTGCCTTAAGTAG

Coding sequence (CDS)

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGTGAACGACGTTCCTCCACATTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAACAACATTGAGTAAGATACAACAGTTCCAGTCCCACCGGTTTTCACTAGAGTGCCTTAAGTAG

Protein sequence

MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLSKIQQFQSHRFSLECLK

Homology

[Close]

BLAST of Carg05815 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDD 49
          MSVSLEALAMAGIDSNEWAMDA+EWER+EM  D+PPHLL +ED++ D+
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDE 48

[Close]

BLAST of Carg05815 vs. NCBI nr
Match: KGN53204.1 (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITT 55
          MSVSLEALAMAGIDSNEWAMDA+EWER+E ++ VPPHLL +E++D D +  +TT
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNE-IDVVPPHLLADEEDDEDGDEHVTT 53

[Close]

BLAST of Carg05815 vs. NCBI nr
Match: KGN53205.1 (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-08
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERD--EMVND--VPPHLLVEEDNDN 47
          M VSLEALAMAGIDSNEWAMDA+EW+ +  +M ND  +PPHLL +ED +N
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of Carg05815 vs. NCBI nr
Match: GAV84674.1 (hypothetical protein CFOL_v3_28116 [Cephalotus follicularis])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEED 44
          MSVSLEALAMAG+D NEW +D +EWER ++    PPHLL EE+
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEE 43

[Close]

BLAST of Carg05815 vs. NCBI nr
Match: KJB17954.1 (hypothetical protein B456_003G039700 [Gossypium raimondii])

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDE 50
          MSVS+EALAMAG+D  EW MD +EWE D+ +   PPHLL + DN+ + E
Sbjct: 1  MSVSIEALAMAGVDYMEWGMDVEEWEHDDEL--PPPHLLADGDNEEEKE 47

[Close]

BLAST of Carg05815 vs. TAIR10
Match: AT2G22320.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.1e-04
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 5  LEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEE 43
          +EALAMAG+D  EW +  +EWE  E V  VP HLL ++
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQESV--VPLHLLADD 36

[Close]

BLAST of Carg05815 vs. TrEMBL
Match: tr|A0A0A0KWE7|A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITT 55
          MSVSLEALAMAGIDSNEWAMDA+EWER+E ++ VPPHLL +E++D D +  +TT
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNE-IDVVPPHLLADEEDDEDGDEHVTT 53

[Close]

BLAST of Carg05815 vs. TrEMBL
Match: tr|A0A0A0KU90|A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERD--EMVND--VPPHLLVEEDNDN 47
          M VSLEALAMAGIDSNEWAMDA+EW+ +  +M ND  +PPHLL +ED +N
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of Carg05815 vs. TrEMBL
Match: tr|A0A1Q3CWR7|A0A1Q3CWR7_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-07
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEED 44
          MSVSLEALAMAG+D NEW +D +EWER ++    PPHLL EE+
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEE 43

[Close]

BLAST of Carg05815 vs. TrEMBL
Match: tr|A0A1R3JKB6|A0A1R3JKB6_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_15989 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.1e-06
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEED 44
          M+ S+EALAMAG+D NEW +  K+WE D+  N  PPHLL EE+
Sbjct: 1  MTASIEALAMAGVDYNEWGLSIKKWEADDQSNWAPPHLLAEEE 43

[Close]

BLAST of Carg05815 vs. TrEMBL
Match: tr|A0A0D2QES3|A0A0D2QES3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G039700 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.1e-06
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDE 50
          MSVS+EALAMAG+D  EW MD +EWE D+ +   PPHLL + DN+ + E
Sbjct: 1  MSVSIEALAMAGVDYMEWGMDVEEWEHDDEL--PPPHLLADGDNEEEKE 47

The following BLAST results are available for this feature:

BLAST of Carg05815 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943015.1	2.6e-12	77.08	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]
KGN53204.1	3.7e-11	70.37	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
KGN53205.1	8.6e-08	68.00	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]
GAV84674.1	1.2e-06	65.12	hypothetical protein CFOL_v3_28116 [Cephalotus follicularis]	[more]
KJB17954.1	1.4e-05	57.14	hypothetical protein B456_003G039700 [Gossypium raimondii]	[more]

BLAST of Carg05815 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22320.1	1.1e-04	52.63	unknown protein	[more]

BLAST of Carg05815 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05815 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWE7\|A0A0A0KWE7_CUCSA	2.5e-11	70.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
tr\|A0A0A0KU90\|A0A0A0KU90_CUCSA	5.7e-08	68.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]
tr\|A0A1Q3CWR7\|A0A1Q3CWR7_CEPFO	8.2e-07	65.12	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4...	[more]
tr\|A0A1R3JKB6\|A0A1R3JKB6_9ROSI	9.1e-06	58.14	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_15989 PE=4 SV=1	[more]
tr\|A0A0D2QES3\|A0A0D2QES3_GOSRA	9.1e-06	57.14	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G039700 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05815-RA	Carg05815-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05815	Cla010676	Watermelon (97103) v1	carwmB1019
Carg05815	Csa4G026810	Cucumber (Chinese Long) v2	carcuB1033
Carg05815	MELO3C017608	Melon (DHL92) v3.5.1	carmeB0992
Carg05815	ClCG01G018710	Watermelon (Charleston Gray)	carwcgB0994
Carg05815	ClCG07G017350	Watermelon (Charleston Gray)	carwcgB1000
Carg05815	CSPI04G04480	Wild cucumber (PI 183967)	carcpiB1057
Carg05815	Cucsa.093760	Cucumber (Gy14) v1	carcgyB1132
Carg05815	CmaCh16G007030	Cucurbita maxima (Rimu)	carcmaB1409
Carg05815	CmaCh04G008160	Cucurbita maxima (Rimu)	carcmaB1414
Carg05815	CmoCh16G007600	Cucurbita moschata (Rifu)	carcmoB1366
Carg05815	Lsi07G001530	Bottle gourd (USVL1VR-Ls)	carlsiB935
Carg05815	Cp4.1LG14g01100	Cucurbita pepo (Zucchini)	carcpeB1414
Carg05815	Cp4.1LG01g09170	Cucurbita pepo (Zucchini)	carcpeB1417
Carg05815	Cp4.1LG10g01140	Cucurbita pepo (Zucchini)	carcpeB1413
Carg05815	CsGy4G004380	Cucumber (Gy14) v2	carcgybB1005
Carg05815	MELO3C017608.2	Melon (DHL92) v3.6.1	carmedB1004
Carg05815	CsaV3_4G004580	Cucumber (Chinese Long) v3	carcucB1063
Carg05815	CsaV3_UNG120960	Cucumber (Chinese Long) v3	carcucB1065
Carg05815	CsaV3_UNG223590	Cucumber (Chinese Long) v3	carcucB1066
Carg05815	Cla97C07G144390	Watermelon (97103) v2	carwmbB1085
Carg05815	Bhi01G001957	Wax gourd	carwgoB1193

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05815	Carg00700	Silver-seed gourd	carcarB431

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05815	Wax gourd	carwgoB1197
Carg05815	Silver-seed gourd	carcarB646
Carg05815	Cucurbita moschata (Rifu)	carcmoB1371
Carg05815	Bottle gourd (USVL1VR-Ls)	carlsiB932
Carg05815	Watermelon (97103) v2	carwmbB1073
Carg05815	Watermelon (97103) v2	carwmbB1076