Bhi01G001957 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G001957
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Tetratricopeptide-like helical
Location	chr1 : 62198038 .. 62198427 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGATGCACAAGAATGGGAAAGAAATGAAACTGAGACCGACGTTCCACCGCATTTATTAGCCGACGAAGATGATAACAGTGACGACAAAAACATAACCAGTACTAACTATAGCTTTTCGGTTGCCGGATTCTCCGGGAGCTGGCACCGGAAAGATGGCAAAGCTGATGATGGTATCCATTACATTTGGGGGATTTTTTGTAGTTTATGCAAAGCCATAGAGAAAAGGGCTTCTAATGGAATGAGCTCAGTGAGAATAATGGTGAATACTATTTTAGGGTTTTTGATGGTGCTGACCATGAAGATAATTAGTGCACAAAGATCCAAGTTGTAA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGATGCACAAGAATGGGAAAGAAATGAAACTGAGACCGACGTTCCACCGCATTTATTAGCCGACGAAGATGATAACAGTGACGACAAAAACATAACCAGTACTAACTATAGCTTTTCGGTTGCCGGATTCTCCGGGAGCTGGCACCGGAAAGATGGCAAAGCTGATGATGGTATCCATTACATTTGGGGGATTTTTTGTAGTTTATGCAAAGCCATAGAGAAAAGGGCTTCTAATGGAATGAGCTCAGTGAGAATAATGGTGAATACTATTTTAGGGTTTTTGATGGTGCTGACCATGAAGATAATTAGTGCACAAAGATCCAAGTTGTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGATGCACAAGAATGGGAAAGAAATGAAACTGAGACCGACGTTCCACCGCATTTATTAGCCGACGAAGATGATAACAGTGACGACAAAAACATAACCAGTACTAACTATAGCTTTTCGGTTGCCGGATTCTCCGGGAGCTGGCACCGGAAAGATGGCAAAGCTGATGATGGTATCCATTACATTTGGGGGATTTTTTGTAGTTTATGCAAAGCCATAGAGAAAAGGGCTTCTAATGGAATGAGCTCAGTGAGAATAATGGTGAATACTATTTTAGGGTTTTTGATGGTGCTGACCATGAAGATAATTAGTGCACAAAGATCCAAGTTGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSDDKNITSTNYSFSVAGFSGSWHRKDGKADDGIHYIWGIFCSLCKAIEKRASNGMSSVRIMVNTILGFLMVLTMKIISAQRSKL

Homology

[Close]

BLAST of Bhi01G001957 vs. TAIR10
Match: AT2G22320.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 8.7e-05
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 5  LEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADE 43
          +EALAMAG+D  EW +  +EWE  E+   VP HLLAD+
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQESV--VPLHLLADD 36

[Close]

BLAST of Bhi01G001957 vs. TrEMBL
Match: tr|A0A0A0KWE7|A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.5e-38
Identity = 95/134 (70.90%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD-DKNITS---TNY 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE +  VPPHLLADE+D+ D D+++T+   +NY
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  SFSVAGFSGSWHRKDGKADDGI-HYIWGIFCSLCKAIEKRASNGMSSVRIMVNTILGFLM 120
            F V G    W  +D KAD G  H I GIFCSL K IEKRASNGMSSVRI+V TILGFLM
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VLTMKIISAQRSKL 130
           V+TMKIISAQRSK+
Sbjct: 121 VMTMKIISAQRSKM 133

[Close]

BLAST of Bhi01G001957 vs. TrEMBL
Match: tr|A0A0A0KU90|A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 52/108 (48.15%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERN----ETETDVPPHLLADEDDNSDDKNITSTNY 60
          M VSLEALAMAGIDSNEWAMDA+EW+ N    E +  +PPHLLADE    D++NI +   
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE----DEENIAAKEL 60

Query: 61 SFSVAGFSGSWHRKDGKADDGIHYIWGIFCS-------LCKAIEKRAS 98
                   S HRK    DDG+     +FC+       L K +EKRAS
Sbjct: 61 CI-------SGHRK----DDGL----VVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of Bhi01G001957 vs. TrEMBL
Match: tr|A0A1Q3CWR7|A0A1Q3CWR7_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-08
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSDDKNITSTNYSF 59
          MSVSLEALAMAG+D NEW +D +EWER + ET  PPHLLA+E++      I   +YSF
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEEE------IVKRDYSF 52

[Close]

BLAST of Bhi01G001957 vs. TrEMBL
Match: tr|V4SW68|V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD 48
          MSVS+EALAMAG D  EW MD +EWER + E + PPHLLADE++  +
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

[Close]

BLAST of Bhi01G001957 vs. TrEMBL
Match: tr|A0A2H5Q4J9|A0A2H5Q4J9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_195420 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD 48
          MSVS+EALAMAG D  EW MD +EWER + E + PPHLLADE++  +
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

[Close]

BLAST of Bhi01G001957 vs. NCBI nr
Match: KGN53204.1 (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 95/134 (70.90%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD-DKNITS---TNY 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE +  VPPHLLADE+D+ D D+++T+   +NY
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  SFSVAGFSGSWHRKDGKADDGI-HYIWGIFCSLCKAIEKRASNGMSSVRIMVNTILGFLM 120
            F V G    W  +D KAD G  H I GIFCSL K IEKRASNGMSSVRI+V TILGFLM
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VLTMKIISAQRSKL 130
           V+TMKIISAQRSK+
Sbjct: 121 VMTMKIISAQRSKM 133

[Close]

BLAST of Bhi01G001957 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSDDKNITSTNYSFSV 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE E D+PPHLLADEDD  D+    ST +  + 
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDE---MSTKFPATR 60

Query: 61  AGFSGSWHRKDGKADDGIHYIWGIFCS------LCKAIEKRASNGMSSVRIMVNTILGFL 120
                       + DDG   + G+ CS      L K  EKR  N +SS+ I+ + ++GFL
Sbjct: 61  CSCC--------RKDDG---VGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFL 120

Query: 121 MVLTMKIISAQRSK 129
           M +T+KII+++RSK
Sbjct: 121 MFMTIKIIASKRSK 120

[Close]

BLAST of Bhi01G001957 vs. NCBI nr
Match: KGN53205.1 (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 4.3e-10
Identity = 52/108 (48.15%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERN----ETETDVPPHLLADEDDNSDDKNITSTNY 60
          M VSLEALAMAGIDSNEWAMDA+EW+ N    E +  +PPHLLADE    D++NI +   
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE----DEENIAAKEL 60

Query: 61 SFSVAGFSGSWHRKDGKADDGIHYIWGIFCS-------LCKAIEKRAS 98
                   S HRK    DDG+     +FC+       L K +EKRAS
Sbjct: 61 CI-------SGHRK----DDGL----VVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of Bhi01G001957 vs. NCBI nr
Match: GAV84674.1 (hypothetical protein CFOL_v3_28116 [Cephalotus follicularis])

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-08
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSDDKNITSTNYSF 59
          MSVSLEALAMAG+D NEW +D +EWER + ET  PPHLLA+E++      I   +YSF
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEEE------IVKRDYSF 52

[Close]

BLAST of Bhi01G001957 vs. NCBI nr
Match: ESR41421.1 (hypothetical protein CICLE_v10027431mg [Citrus clementina] >GAY59570.1 hypothetical protein CUMW_195420 [Citrus unshiu])

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD 48
          MSVS+EALAMAG D  EW MD +EWER + E + PPHLLADE++  +
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

The following BLAST results are available for this feature:

BLAST of Bhi01G001957 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22320.1	8.7e-05	55.26	unknown protein	[more]

BLAST of Bhi01G001957 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G001957 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWE7\|A0A0A0KWE7_CUCSA	1.5e-38	70.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
tr\|A0A0A0KU90\|A0A0A0KU90_CUCSA	2.9e-10	48.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]
tr\|A0A1Q3CWR7\|A0A1Q3CWR7_CEPFO	2.1e-08	58.62	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4...	[more]
tr\|V4SW68\|V4SW68_9ROSI	3.0e-07	61.70	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027431mg PE=4 ...	[more]
tr\|A0A2H5Q4J9\|A0A2H5Q4J9_CITUN	3.0e-07	61.70	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_195420 PE=4 SV=1	[more]

BLAST of Bhi01G001957 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53204.1	2.2e-38	70.90	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
XP_022943015.1	1.7e-22	51.49	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]
KGN53205.1	4.3e-10	48.15	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]
GAV84674.1	3.1e-08	58.62	hypothetical protein CFOL_v3_28116 [Cephalotus follicularis]	[more]
ESR41421.1	4.5e-07	61.70	hypothetical protein CICLE_v10027431mg [Citrus clementina] >GAY59570.1 hypotheti...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001957	Bhi01M001957	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi01G001957	Csa4G026810	Cucumber (Chinese Long) v2	cuwgoB376
Bhi01G001957	MELO3C017608	Melon (DHL92) v3.5.1	mewgoB568
Bhi01G001957	ClCG07G017350	Watermelon (Charleston Gray)	wcgwgoB575
Bhi01G001957	CSPI04G04480	Wild cucumber (PI 183967)	cpiwgoB378
Bhi01G001957	Cucsa.093760	Cucumber (Gy14) v1	cgywgoB126
Bhi01G001957	CmaCh04G008160	Cucurbita maxima (Rimu)	cmawgoB0846
Bhi01G001957	CmaCh16G007030	Cucurbita maxima (Rimu)	cmawgoB0432
Bhi01G001957	CmoCh16G007600	Cucurbita moschata (Rifu)	cmowgoB0428
Bhi01G001957	Lsi07G001530	Bottle gourd (USVL1VR-Ls)	lsiwgoB555
Bhi01G001957	Cp4.1LG01g09170	Cucurbita pepo (Zucchini)	cpewgoB0511
Bhi01G001957	Cp4.1LG14g01100	Cucurbita pepo (Zucchini)	cpewgoB0289
Bhi01G001957	CsGy4G004380	Cucumber (Gy14) v2	cgybwgoB361
Bhi01G001957	MELO3C017608.2	Melon (DHL92) v3.6.1	medwgoB573
Bhi01G001957	Carg05815	Silver-seed gourd	carwgoB1193
Bhi01G001957	CsaV3_UNG223590	Cucumber (Chinese Long) v3	cucwgoB440
Bhi01G001957	CsaV3_UNG120960	Cucumber (Chinese Long) v3	cucwgoB439
Bhi01G001957	CsaV3_4G004580	Cucumber (Chinese Long) v3	cucwgoB381
Bhi01G001957	Cla010676	Watermelon (97103) v1	wgowmB176
Bhi01G001957	Cla97C07G144390	Watermelon (97103) v2	wgowmbB222

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G001957	Watermelon (97103) v2	wgowmbB171
Bhi01G001957	Silver-seed gourd	carwgoB0460
Bhi01G001957	Silver-seed gourd	carwgoB1020
Bhi01G001957	Silver-seed gourd	carwgoB1086
Bhi01G001957	Cucurbita maxima (Rimu)	cmawgoB0440
Bhi01G001957	Cucurbita maxima (Rimu)	cmawgoB0854
Bhi01G001957	Cucurbita moschata (Rifu)	cmowgoB0438
Bhi01G001957	Cucurbita moschata (Rifu)	cmowgoB0843
Bhi01G001957	Cucurbita pepo (Zucchini)	cpewgoB0299
Bhi01G001957	Cucurbita pepo (Zucchini)	cpewgoB0519
Bhi01G001957	Cucumber (Chinese Long) v3	cucwgoB438