ClCG07G017350 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G017350
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr07 : 33824562 .. 33824978 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

Homology

[Close]

BLAST of ClCG07G017350 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-41
Identity = 96/140 (68.57%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE  ID VPPHLLADE+DD+D      D+    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNE--IDVVPPHLLADEEDDED-----GDEHVTT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHC--ILGIFCSLSKAIERKASNGMNSVRIMVRT 120
           S +SNY FP+ G F     +D + DG H   ILGIFCSLSK IE++ASNGM+SVRI+VRT
Sbjct: 61  STISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRT 120

Query: 121 ILGFLMVMTIKIISAQTSKL 139
           ILGFLMVMT+KIISAQ SK+
Sbjct: 121 ILGFLMVMTMKIISAQRSKM 133

[Close]

BLAST of ClCG07G017350 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-10
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLADEDDDD 48
          M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLADED+++
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of ClCG07G017350 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELE-PPPHLLADEEEKEE 47

[Close]

BLAST of ClCG07G017350 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELE-PPPHLLADEEEKEE 47

[Close]

BLAST of ClCG07G017350 vs. TrEMBL
Match: A0A0D3C161_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 3  VSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENV 60
          VS+EALAMAG D  EW +  QEWE  E+    VPPHLLAD+ + D+++   N+D+ V
Sbjct: 2  VSMEALAMAGTDYQEWGLSVQEWELQES---VVPPHLLADDSEKDEEEDYQNEDDRV 55

[Close]

BLAST of ClCG07G017350 vs. TAIR10
Match: AT2G22320.1 (AT2G22320.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 5  LEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADE--DDDDDDDGNDNDDEN 59
          +EALAMAG+D  EW +  +EWE  E+    VP HLLAD+  +++ ++D  DNDD++
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQES---VVPLHLLADDFKEEEQEEDHQDNDDDD 53

[Close]

BLAST of ClCG07G017350 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 4.5e-41
Identity = 96/140 (68.57%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE  ID VPPHLLADE+DD+D      D+    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNE--IDVVPPHLLADEEDDED-----GDEHVTT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHC--ILGIFCSLSKAIERKASNGMNSVRIMVRT 120
           S +SNY FP+ G F     +D + DG H   ILGIFCSLSK IE++ASNGM+SVRI+VRT
Sbjct: 61  STISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRT 120

Query: 121 ILGFLMVMTIKIISAQTSKL 139
           ILGFLMVMT+KIISAQ SK+
Sbjct: 121 ILGFLMVMTMKIISAQRSKM 133

[Close]

BLAST of ClCG07G017350 vs. NCBI nr
Match: gi|729468301|ref|XP_010526659.1| (PREDICTED: prostatic spermine-binding protein [Tarenaya hassleriana])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 31/61 (50.82%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDN---DDE 59
          M+VSLEALAMAG D  +W +D +EWE  ++++D VPPHLLAD+D+++ ++ +D+   DDE
Sbjct: 1  MAVSLEALAMAGADYRQWGLDIEEWEDQDSDVDHVPPHLLADDDEEEQEEHDDHQPRDDE 60

[Close]

BLAST of ClCG07G017350 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 4.1e-10
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLADEDDDD 48
          M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLADED+++
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of ClCG07G017350 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELE-PPPHLLADEEEKEE 47

[Close]

BLAST of ClCG07G017350 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELE-PPPHLLADEEEKEE 47

The following BLAST results are available for this feature:

BLAST of ClCG07G017350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE7_CUCSA	3.1e-41	68.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1	[more]
A0A0A0KU90_CUCSA	2.8e-10	68.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1	[more]
V4SW68_9ROSI	7.7e-08	60.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1	[more]
V4SR82_9ROSI	1.0e-07	60.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1	[more]
A0A0D3C161_BRAOL	1.7e-07	50.88	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of ClCG07G017350 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22320.1	1.8e-08	46.43	unknown protein	[more]

BLAST of ClCG07G017350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198046\|gb\|KGN53204.1\|	4.5e-41	68.57	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
gi\|729468301\|ref\|XP_010526659.1\|	3.1e-10	50.82	PREDICTED: prostatic spermine-binding protein [Tarenaya hassleriana]	[more]
gi\|700198047\|gb\|KGN53205.1\|	4.1e-10	68.00	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]
gi\|567871119\|ref\|XP_006428181.1\|	1.1e-07	60.42	hypothetical protein CICLE_v10027431mg [Citrus clementina]	[more]
gi\|567871177\|ref\|XP_006428210.1\|	1.5e-07	60.42	hypothetical protein CICLE_v10027432mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G017350.1	ClCG07G017350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG07G017350	Csa4G026810	Cucumber (Chinese Long) v2	cuwcgB319
ClCG07G017350	MELO3C017608	Melon (DHL92) v3.5.1	mewcgB493
ClCG07G017350	Cla010676	Watermelon (97103) v1	wcgwmB372
ClCG07G017350	Cla97C07G144390	Watermelon (97103) v2	wcgwmbB307
ClCG07G017350	Bhi01G001957	Wax gourd	wcgwgoB575
ClCG07G017350	CSPI04G04480	Wild cucumber (PI 183967)	cpiwcgB336
ClCG07G017350	Cucsa.093760	Cucumber (Gy14) v1	cgywcgB119
ClCG07G017350	CmaCh04G008160	Cucurbita maxima (Rimu)	cmawcgB677
ClCG07G017350	CmaCh16G007030	Cucurbita maxima (Rimu)	cmawcgB304
ClCG07G017350	CmoCh16G007600	Cucurbita moschata (Rifu)	cmowcgB297
ClCG07G017350	Lsi07G001530	Bottle gourd (USVL1VR-Ls)	lsiwcgB407
ClCG07G017350	Cp4.1LG14g01100	Cucurbita pepo (Zucchini)	cpewcgB213
ClCG07G017350	Cp4.1LG01g09170	Cucurbita pepo (Zucchini)	cpewcgB414
ClCG07G017350	CsGy4G004380	Cucumber (Gy14) v2	cgybwcgB297
ClCG07G017350	MELO3C017608.2	Melon (DHL92) v3.6.1	medwcgB488
ClCG07G017350	Carg05815	Silver-seed gourd	carwcgB1000
ClCG07G017350	CsaV3_4G004580	Cucumber (Chinese Long) v3	cucwcgB336
ClCG07G017350	CsaV3_UNG120960	Cucumber (Chinese Long) v3	cucwcgB354
ClCG07G017350	CsaV3_UNG223590	Cucumber (Chinese Long) v3	cucwcgB358

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG07G017350	Silver-seed gourd	carwcgB0373
ClCG07G017350	Silver-seed gourd	carwcgB0848
ClCG07G017350	Silver-seed gourd	carwcgB0917
ClCG07G017350	Cucumber (Chinese Long) v3	cucwcgB356
ClCG07G017350	Cucurbita maxima (Rimu)	cmawcgB302
ClCG07G017350	Cucurbita maxima (Rimu)	cmawcgB669
ClCG07G017350	Cucurbita moschata (Rifu)	cmowcgB295
ClCG07G017350	Cucurbita moschata (Rifu)	cmowcgB679
ClCG07G017350	Cucurbita pepo (Zucchini)	cpewcgB211
ClCG07G017350	Cucurbita pepo (Zucchini)	cpewcgB403