Cp4.1LG14g01100 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g01100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 3821942 .. 3822337 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATCGAGAACGACGTTCCACCGCACTTATTAGCCGATGAAGACGACGATGACGATAACGTAACGAGTAGTGTCAACAATTATAGCTTCCCGGTCGCTGGATTCTTCGATAGCTTGCGTCGGGAAGATGGCGGAGCCGATGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTCAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTAGGGTTTCTACTGGTGGAGATTATCAAGATCATTAGTGCACACACATCCAATATGATTATTCCTTGA

mRNA sequence

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATCGAGAACGACGTTCCACCGCACTTATTAGCCGATGAAGACGACGATGACGATAACGTAACGAGTAGTGTCAACAATTATAGCTTCCCGGTCGCTGGATTCTTCGATAGCTTGCGTCGGGAAGATGGCGGAGCCGATGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTCAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTAGGGTTTCTACTGGTGGAGATTATCAAGATCATTAGTGCACACACATCCAATATGATTATTCCTTGA

Coding sequence (CDS)

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATCGAGAACGACGTTCCACCGCACTTATTAGCCGATGAAGACGACGATGACGATAACGTAACGAGTAGTGTCAACAATTATAGCTTCCCGGTCGCTGGATTCTTCGATAGCTTGCGTCGGGAAGATGGCGGAGCCGATGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTCAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTAGGGTTTCTACTGGTGGAGATTATCAAGATCATTAGTGCACACACATCCAATATGATTATTCCTTGA

Protein sequence

MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSSVNNYSFPVAGFFDSLRREDGGADDIHCFWGILCSFSKSLEKRASNGMSSVRIIVRTILGFLLVEIIKIISAHTSNMIIP
Homology
[Close]
BLAST of Cp4.1LG14g01100 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 91/134 (67.91%), Postives = 101/134 (75.37%), Query Frame = 1 

Query: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN----VTSSVNNY 60
           MSVSLEALAMAGI SNEWAMDAEEWERNEI+  VPPHLLADE+DD+D      TS+++NY
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  SFPVAGFFDSLRREDGGAD--DIHCFWGILCSFSKSLEKRASNGMSSVRIIVRTILGFLL 120
            FPV G F+  R  D  AD    H   GI CS SK +EKRASNGMSSVRIIVRTILGFL+
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VEIIKIISAHTSNM 129
           V  +KIISA  S M
Sbjct: 121 VMTMKIISAQRSKM 133

[Close]
BLAST of Cp4.1LG14g01100 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.0e-10
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDDDNVTSSVNNY 60
          M VSLEALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADE  D++N+ +     
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE--DEENIAAK---- 60

Query: 61 SFPVAGFFDSLRREDGGADDIHCFWGILCSFSKSLEKRAS 97
             ++G      R+D G      F        K +EKRAS
Sbjct: 61 ELCISG-----HRKDDGLVVFCAFRRSYAILRKMMEKRAS 89

[Close]
BLAST of Cp4.1LG14g01100 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSS 53
          MSVS+EALAMAG    EW MD EEWER +IE + PPHLLADE++ ++ ++++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLSTA 52

[Close]
BLAST of Cp4.1LG14g01100 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSS 53
          MSVS+EALAMAG    EW MD EEWER ++E + PPHLLADE++ ++ ++++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLSTA 52

[Close]
BLAST of Cp4.1LG14g01100 vs. TrEMBL
Match: A0A0R0F2V1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G016600 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-07
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 1 

Query: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSSVNNYSFPV 60
           MSVSLEALAMAG +  E+AMD EEWER ++E   PPHLLA E + ++ V      +  P 
Sbjct: 1   MSVSLEALAMAGASDVEFAMDIEEWERKDLEQYPPPHLLAHEKEGNNGVYGLPTTHFLPN 60

Query: 61  AGFFDSLRREDGGADDIHCFWGILCSFSKSLEKRASNGMSSVRIIVRTILGFLLV 116
              ++  + E+ G    H          ++ E   S    S++II R +   ++V
Sbjct: 61  HNTWEYDKEEEHGVTFTH----HKKKLDRTTETIWSEFTRSIKIIARALETLIMV 111

[Close]
BLAST of Cp4.1LG14g01100 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-35
Identity = 91/134 (67.91%), Postives = 101/134 (75.37%), Query Frame = 1 

Query: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN----VTSSVNNY 60
           MSVSLEALAMAGI SNEWAMDAEEWERNEI+  VPPHLLADE+DD+D      TS+++NY
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  SFPVAGFFDSLRREDGGAD--DIHCFWGILCSFSKSLEKRASNGMSSVRIIVRTILGFLL 120
            FPV G F+  R  D  AD    H   GI CS SK +EKRASNGMSSVRIIVRTILGFL+
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VEIIKIISAHTSNM 129
           V  +KIISA  S M
Sbjct: 121 VMTMKIISAQRSKM 133

[Close]
BLAST of Cp4.1LG14g01100 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 8.6e-10
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDDDNVTSSVNNY 60
          M VSLEALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADE  D++N+ +     
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE--DEENIAAK---- 60

Query: 61 SFPVAGFFDSLRREDGGADDIHCFWGILCSFSKSLEKRAS 97
             ++G      R+D G      F        K +EKRAS
Sbjct: 61 ELCISG-----HRKDDGLVVFCAFRRSYAILRKMMEKRAS 89

[Close]
BLAST of Cp4.1LG14g01100 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSS 53
          MSVS+EALAMAG    EW MD EEWER +IE + PPHLLADE++ ++ ++++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLSTA 52

[Close]
BLAST of Cp4.1LG14g01100 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-07
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSS 53
          MSVS+EALAMAG    EW MD EEWER ++E + PPHLLADE++ ++ ++++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLSTA 52

[Close]
BLAST of Cp4.1LG14g01100 vs. NCBI nr
Match: gi|947048042|gb|KRG97570.1| (hypothetical protein GLYMA_18G016600 [Glycine max])

HSP 1 Score: 62.0 bits (149), Expect = 8.9e-07
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 1 

Query: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSSVNNYSFPV 60
           MSVSLEALAMAG +  E+AMD EEWER ++E   PPHLLA E + ++ V      +  P 
Sbjct: 1   MSVSLEALAMAGASDVEFAMDIEEWERKDLEQYPPPHLLAHEKEGNNGVYGLPTTHFLPN 60

Query: 61  AGFFDSLRREDGGADDIHCFWGILCSFSKSLEKRASNGMSSVRIIVRTILGFLLV 116
              ++  + E+ G    H          ++ E   S    S++II R +   ++V
Sbjct: 61  HNTWEYDKEEEHGVTFTH----HKKKLDRTTETIWSEFTRSIKIIARALETLIMV 111

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g01100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g01100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWE7_CUCSA1.4e-3567.91Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1[more]
A0A0A0KU90_CUCSA6.0e-1048.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1[more]
V4SR82_9ROSI2.1e-0757.69Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1[more]
V4SW68_9ROSI2.8e-0755.77Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1[more]
A0A0R0F2V1_SOYBN6.2e-0735.65Uncharacterized protein OS=Glycine max GN=GLYMA_18G016600 PE=4 SV=1[more]
BLAST of Cp4.1LG14g01100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g01100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198046|gb|KGN53204.1|2.0e-3567.91hypothetical protein Csa_4G026810 [Cucumis sativus][more]
gi|700198047|gb|KGN53205.1|8.6e-1048.00hypothetical protein Csa_4G026820 [Cucumis sativus][more]
gi|567871177|ref|XP_006428210.1|3.1e-0757.69hypothetical protein CICLE_v10027432mg [Citrus clementina][more]
gi|567871119|ref|XP_006428181.1|4.0e-0755.77hypothetical protein CICLE_v10027431mg [Citrus clementina][more]
gi|947048042|gb|KRG97570.1|8.9e-0735.65hypothetical protein GLYMA_18G016600 [Glycine max][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g01100.1Cp4.1LG14g01100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g01100Cucsa.093760Cucumber (Gy14) v1cgycpeB0186
Cp4.1LG14g01100CmaCh16G007030Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g01100CmaCh04G008160Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g01100CmoCh16G007600Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g01100Cla010676Watermelon (97103) v1cpewmB223
Cp4.1LG14g01100Csa4G026810Cucumber (Chinese Long) v2cpecuB221
Cp4.1LG14g01100MELO3C017608Melon (DHL92) v3.5.1cpemeB196
Cp4.1LG14g01100ClCG07G017350Watermelon (Charleston Gray)cpewcgB213
Cp4.1LG14g01100CSPI04G04480Wild cucumber (PI 183967)cpecpiB223
Cp4.1LG14g01100Lsi07G001530Bottle gourd (USVL1VR-Ls)cpelsiB185
Cp4.1LG14g01100MELO3C017608.2Melon (DHL92) v3.6.1cpemedB238
Cp4.1LG14g01100CsaV3_UNG120960Cucumber (Chinese Long) v3cpecucB0273
Cp4.1LG14g01100CsaV3_UNG223590Cucumber (Chinese Long) v3cpecucB0274
Cp4.1LG14g01100CsaV3_4G004580Cucumber (Chinese Long) v3cpecucB0266
Cp4.1LG14g01100Bhi01G001957Wax gourdcpewgoB0289
Cp4.1LG14g01100CsGy4G004380Cucumber (Gy14) v2cgybcpeB487
Cp4.1LG14g01100Carg05815Silver-seed gourdcarcpeB1414
Cp4.1LG14g01100Carg00700Silver-seed gourdcarcpeB0557
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g01100Cp4.1LG10g01140Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG14g01100Cp4.1LG01g09170Cucurbita pepo (Zucchini)cpecpeB233
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g01100Bottle gourd (USVL1VR-Ls)cpelsiB164
Cp4.1LG14g01100Bottle gourd (USVL1VR-Ls)cpelsiB170
Cp4.1LG14g01100Watermelon (Charleston Gray)cpewcgB195
Cp4.1LG14g01100Watermelon (Charleston Gray)cpewcgB204
Cp4.1LG14g01100Watermelon (97103) v1cpewmB232
Cp4.1LG14g01100Melon (DHL92) v3.5.1cpemeB209
Cp4.1LG14g01100Melon (DHL92) v3.6.1cpemedB251
Cp4.1LG14g01100Silver-seed gourdcarcpeB1301
Cp4.1LG14g01100Cucumber (Chinese Long) v3cpecucB0272
Cp4.1LG14g01100Cucumber (Chinese Long) v3cpecucB0284
Cp4.1LG14g01100Wax gourdcpewgoB0305
Cp4.1LG14g01100Cucumber (Gy14) v1cgycpeB0216
Cp4.1LG14g01100Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g01100Wild cucumber (PI 183967)cpecpiB232