Csa4G026810 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G026810
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 2835606 .. 2836007 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA

mRNA sequence

ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA

Coding sequence (CDS)

ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM*

Homology

[Close]

BLAST of Csa4G026810 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.4e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
           MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60

Query: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
           FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV
Sbjct: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120

Query: 121 MTMKIISAQRSKM 134
           MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 133

[Close]

BLAST of Csa4G026810 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-10
Identity = 50/113 (44.25%), Postives = 62/113 (54.87%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN-----EIDVVPPHLLADEEDDEDGDEHVTTST 60
           M VSLEALAMAGIDSNEWAMDAEEW+ N       D++PPHLLADE+++    + +  S 
Sbjct: 1   MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCIS- 60

Query: 61  ISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCS-------LSKVIEKRAS 102
                        G R    K DG      L +FC+       L K++EKRAS
Sbjct: 61  -------------GHR----KDDG------LVVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of Csa4G026810 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.2e-09
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDED--------GDEHV 60
          MSVS+EALAMAG D  EW MD EEWER +I++  PPHLLADEE+ E+         +++ 
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLSTASHFSEDND 60

Query: 61 TTSTISNYCFPVDGSFEGWRGRD 75
          T   ++  C  +       RG++
Sbjct: 61 TVDAVAADCDKIPSDGRSMRGQN 83

[Close]

BLAST of Csa4G026810 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-09
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDED--------GDEHV 60
          MSVS+EALAMAG D  EW MD EEWER ++++  PPHLLADEE+ E+         +++ 
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLSTASHFSEDND 60

Query: 61 TTSTISNYCFPVDGSFEGWRGRD 75
          T   ++  C  +       RG++
Sbjct: 61 TVDAVAVDCDKIPSDGRSMRGQN 83

[Close]

BLAST of Csa4G026810 vs. TrEMBL
Match: V4SR86_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027542mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDED 47
          M VSLEALAM G D  EW MDAEEWER++ D+ PPHLLA+EE++E+
Sbjct: 1  MLVSLEALAMTGADYVEWGMDAEEWERDD-DLTPPHLLAEEEEEEE 45

[Close]

BLAST of Csa4G026810 vs. TAIR10
Match: AT2G22320.1 (AT2G22320.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-07
Identity = 28/52 (53.85%), Postives = 31/52 (59.62%), Query Frame = 1


Query: 5  LEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLAD-------EEDDEDGDE 50
          +EALAMAG+D  EW +  EEWE  E  VVP HLLAD       EED +D D+
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQE-SVVPLHLLADDFKEEEQEEDHQDNDD 51

[Close]

BLAST of Csa4G026810 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 3.4e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
           MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60

Query: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
           FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV
Sbjct: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120

Query: 121 MTMKIISAQRSKM 134
           MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 133

[Close]

BLAST of Csa4G026810 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 8.8e-10
Identity = 50/113 (44.25%), Postives = 62/113 (54.87%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN-----EIDVVPPHLLADEEDDEDGDEHVTTST 60
           M VSLEALAMAGIDSNEWAMDAEEW+ N       D++PPHLLADE+++    + +  S 
Sbjct: 1   MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCIS- 60

Query: 61  ISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCS-------LSKVIEKRAS 102
                        G R    K DG      L +FC+       L K++EKRAS
Sbjct: 61  -------------GHR----KDDG------LVVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of Csa4G026810 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 68.9 bits (167), Expect = 7.5e-09
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDED--------GDEHV 60
          MSVS+EALAMAG D  EW MD EEWER +I++  PPHLLADEE+ E+         +++ 
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLSTASHFSEDND 60

Query: 61 TTSTISNYCFPVDGSFEGWRGRD 75
          T   ++  C  +       RG++
Sbjct: 61 TVDAVAADCDKIPSDGRSMRGQN 83

[Close]

BLAST of Csa4G026810 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDED--------GDEHV 60
          MSVS+EALAMAG D  EW MD EEWER ++++  PPHLLADEE+ E+         +++ 
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLSTASHFSEDND 60

Query: 61 TTSTISNYCFPVDGSFEGWRGRD 75
          T   ++  C  +       RG++
Sbjct: 61 TVDAVAVDCDKIPSDGRSMRGQN 83

[Close]

BLAST of Csa4G026810 vs. NCBI nr
Match: gi|567871187|ref|XP_006428215.1| (hypothetical protein CICLE_v10027542mg [Citrus clementina])

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-08
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDED 47
          M VSLEALAM G D  EW MDAEEWER++ D+ PPHLLA+EE++E+
Sbjct: 1  MLVSLEALAMTGADYVEWGMDAEEWERDD-DLTPPHLLAEEEEEEE 45

The following BLAST results are available for this feature:

BLAST of Csa4G026810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE7_CUCSA	2.4e-70	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1	[more]
A0A0A0KU90_CUCSA	6.1e-10	44.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1	[more]
V4SR82_9ROSI	5.2e-09	43.37	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1	[more]
V4SW68_9ROSI	8.9e-09	42.17	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1	[more]
V4SR86_9ROSI	3.4e-08	67.39	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027542mg PE=4 SV=1	[more]

BLAST of Csa4G026810 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22320.1	1.5e-07	53.85	unknown protein	[more]

BLAST of Csa4G026810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198046\|gb\|KGN53204.1\|	3.4e-70	100.00	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
gi\|700198047\|gb\|KGN53205.1\|	8.8e-10	44.25	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]
gi\|567871177\|ref\|XP_006428210.1\|	7.5e-09	43.37	hypothetical protein CICLE_v10027432mg [Citrus clementina]	[more]
gi\|567871119\|ref\|XP_006428181.1\|	1.3e-08	42.17	hypothetical protein CICLE_v10027431mg [Citrus clementina]	[more]
gi\|567871187\|ref\|XP_006428215.1\|	4.8e-08	67.39	hypothetical protein CICLE_v10027542mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G026810.1	Csa4G026810.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G026810	Cla010676	Watermelon (97103) v1	cuwmB312
Csa4G026810	MELO3C017608	Melon (DHL92) v3.5.1	cumeB312
Csa4G026810	ClCG07G017350	Watermelon (Charleston Gray)	cuwcgB319
Csa4G026810	Lsi07G001530	Bottle gourd (USVL1VR-Ls)	culsiB303
Csa4G026810	MELO3C017608.2	Melon (DHL92) v3.6.1	cumedB297
Csa4G026810	Cla97C07G144390	Watermelon (97103) v2	cuwmbB316
Csa4G026810	Bhi01G001957	Wax gourd	cuwgoB376
Csa4G026810	CSPI04G04480	Wild cucumber (PI 183967)	cpicuB182
Csa4G026810	Cucsa.093760	Cucumber (Gy14) v1	cgycuB102
Csa4G026810	CmaCh04G008160	Cucurbita maxima (Rimu)	cmacuB713
Csa4G026810	CmaCh16G007030	Cucurbita maxima (Rimu)	cmacuB337
Csa4G026810	CmoCh16G007600	Cucurbita moschata (Rifu)	cmocuB325
Csa4G026810	Cp4.1LG14g01100	Cucurbita pepo (Zucchini)	cpecuB221
Csa4G026810	Cp4.1LG01g09170	Cucurbita pepo (Zucchini)	cpecuB407
Csa4G026810	CsGy4G004380	Cucumber (Gy14) v2	cgybcuB165
Csa4G026810	Carg05815	Silver-seed gourd	carcuB1033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G026810	Watermelon (97103) v2	cuwmbB266
Csa4G026810	Cucurbita maxima (Rimu)	cmacuB332
Csa4G026810	Cucurbita maxima (Rimu)	cmacuB710
Csa4G026810	Cucurbita moschata (Rifu)	cmocuB321
Csa4G026810	Cucurbita moschata (Rifu)	cmocuB700
Csa4G026810	Cucurbita moschata (Rifu)	cmocuB704
Csa4G026810	Cucurbita moschata (Rifu)	cmocuB705
Csa4G026810	Cucurbita pepo (Zucchini)	cpecuB218
Csa4G026810	Cucurbita pepo (Zucchini)	cpecuB401
Csa4G026810	Cucurbita pepo (Zucchini)	cpecuB405
Csa4G026810	Silver-seed gourd	carcuB0403
Csa4G026810	Silver-seed gourd	carcuB0886
Csa4G026810	Silver-seed gourd	carcuB0958