Cucsa.093760 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.093760
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBnaC04g34710D protein
Locationscaffold00919 : 66828 .. 67386 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTCCATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAACAAATTTGGTGGATATATTTTGCAAGAAAAAGTTGATATATATGTTTTTTTTATTTACATTCTTTCAGAATACATTATGGTAATATAGGAAGAAAGAAAGCTTTCGTTTTCATCTGCTGTAGAGAATTGAATTACGACCATTTTACGTGA

mRNA sequence

GTTTTCCATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGAAGAAAGAAAGCTTTCGTTTTCATCTGCTGTAGAGAATTGAATTACGACCATTTTACGTGA

Coding sequence (CDS)

GTTTTCCATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGAAGAAAGAAAGCTTTCGTTTTCATCTGCTGTAGAGAATTGAATTACGACCATTTTACGTGA

Protein sequence

FSMSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGRKKAFVFICCRELNYDHFT*
Homology
[Close]
BLAST of Cucsa.093760 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDG 50
          MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDG
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDG 47

[Close]
BLAST of Cucsa.093760 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-10
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERN-----EIDVVPPHLLADEEDDEDGRKK 53
          M VSLEALAMAGIDSNEWAMDAEEW+ N       D++PPHLLADE+++    K+
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKE 55

[Close]
BLAST of Cucsa.093760 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.0e-09
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDED 49
          MSVS+EALAMAG D  EW MD EEWER +I++  PPHLLADEE+ E+
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEE 47

[Close]
BLAST of Cucsa.093760 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-09
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDED 49
          MSVS+EALAMAG D  EW MD EEWER ++++  PPHLLADEE+ E+
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

[Close]
BLAST of Cucsa.093760 vs. TrEMBL
Match: V4SR86_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027542mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-08
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDED 49
          M VSLEALAM G D  EW MDAEEWER++ D+ PPHLLA+EE++E+
Sbjct: 1  MLVSLEALAMTGADYVEWGMDAEEWERDD-DLTPPHLLAEEEEEEE 45

[Close]
BLAST of Cucsa.093760 vs. TAIR10
Match: AT2G22320.1 (AT2G22320.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.9e-07
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1 

Query: 7  LEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLAD----EEDDED 49
          +EALAMAG+D  EW +  EEWE  E  VVP HLLAD    EE +ED
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQE-SVVPLHLLADDFKEEEQEED 45

[Close]
BLAST of Cucsa.093760 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDG 50
          MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDG
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDG 47

[Close]
BLAST of Cucsa.093760 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-10
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERN-----EIDVVPPHLLADEEDDEDGRKK 53
          M VSLEALAMAGIDSNEWAMDAEEW+ N       D++PPHLLADE+++    K+
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKE 55

[Close]
BLAST of Cucsa.093760 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-09
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDED 49
          MSVS+EALAMAG D  EW MD EEWER +I++  PPHLLADEE+ E+
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEE 47

[Close]
BLAST of Cucsa.093760 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDED 49
          MSVS+EALAMAG D  EW MD EEWER ++++  PPHLLADEE+ E+
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

[Close]
BLAST of Cucsa.093760 vs. NCBI nr
Match: gi|567871187|ref|XP_006428215.1| (hypothetical protein CICLE_v10027542mg [Citrus clementina])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1 

Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDED 49
          M VSLEALAM G D  EW MDAEEWER++ D+ PPHLLA+EE++E+
Sbjct: 1  MLVSLEALAMTGADYVEWGMDAEEWERDD-DLTPPHLLAEEEEEEE 45

The following BLAST results are available for this feature:
BLAST of Cucsa.093760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWE7_CUCSA1.4e-18100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1[more]
A0A0A0KU90_CUCSA2.4e-1063.64Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1[more]
V4SR82_9ROSI6.0e-0968.09Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1[more]
V4SW68_9ROSI7.8e-0965.96Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1[more]
V4SR86_9ROSI1.7e-0867.39Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027542mg PE=4 SV=1[more]
BLAST of Cucsa.093760 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22320.12.9e-0758.70 unknown protein[more]
BLAST of Cucsa.093760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198046|gb|KGN53204.1|2.0e-18100.00hypothetical protein Csa_4G026810 [Cucumis sativus][more]
gi|700198047|gb|KGN53205.1|3.5e-1063.64hypothetical protein Csa_4G026820 [Cucumis sativus][more]
gi|567871177|ref|XP_006428210.1|8.6e-0968.09hypothetical protein CICLE_v10027432mg [Citrus clementina][more]
gi|567871119|ref|XP_006428181.1|1.1e-0865.96hypothetical protein CICLE_v10027431mg [Citrus clementina][more]
gi|567871187|ref|XP_006428215.1|2.5e-0867.39hypothetical protein CICLE_v10027542mg [Citrus clementina][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.093760.1Cucsa.093760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.093760Cla010676Watermelon (97103) v1cgywmB117
Cucsa.093760Csa4G026810Cucumber (Chinese Long) v2cgycuB102
Cucsa.093760MELO3C017608Melon (DHL92) v3.5.1cgymeB111
Cucsa.093760ClCG07G017350Watermelon (Charleston Gray)cgywcgB119
Cucsa.093760CSPI04G04480Wild cucumber (PI 183967)cgycpiB103
Cucsa.093760CmaCh16G007030Cucurbita maxima (Rimu)cgycmaB0195
Cucsa.093760CmaCh04G008160Cucurbita maxima (Rimu)cgycmaB0202
Cucsa.093760CmoCh16G007600Cucurbita moschata (Rifu)cgycmoB0188
Cucsa.093760Lsi07G001530Bottle gourd (USVL1VR-Ls)cgylsiB115
Cucsa.093760Cp4.1LG14g01100Cucurbita pepo (Zucchini)cgycpeB0186
Cucsa.093760Cp4.1LG01g09170Cucurbita pepo (Zucchini)cgycpeB0190
Cucsa.093760MELO3C017608.2Melon (DHL92) v3.6.1cgymedB109
Cucsa.093760CsaV3_4G004580Cucumber (Chinese Long) v3cgycucB102
Cucsa.093760CsaV3_UNG120960Cucumber (Chinese Long) v3cgycucB104
Cucsa.093760CsaV3_UNG223590Cucumber (Chinese Long) v3cgycucB105
Cucsa.093760Cla97C07G144390Watermelon (97103) v2cgywmbB112
Cucsa.093760Bhi01G001957Wax gourdcgywgoB126
Cucsa.093760Carg05815Silver-seed gourdcarcgyB1132
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.093760Cucurbita maxima (Rimu)cgycmaB0203
Cucsa.093760Cucurbita maxima (Rimu)cgycmaB0196
Cucsa.093760Cucurbita moschata (Rifu)cgycmoB0189
Cucsa.093760Cucurbita moschata (Rifu)cgycmoB0196
Cucsa.093760Cucurbita moschata (Rifu)cgycmoB0197
Cucsa.093760Cucurbita pepo (Zucchini)cgycpeB0191
Cucsa.093760Cucurbita pepo (Zucchini)cgycpeB0187
Cucsa.093760Silver-seed gourdcarcgyB0431
Cucsa.093760Silver-seed gourdcarcgyB0992
Cucsa.093760Silver-seed gourdcarcgyB1057
Cucsa.093760Cucumber (Chinese Long) v3cgycucB103