Cla010676 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010676
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 28766729 .. 28767145 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

Homology

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-41
Identity = 96/140 (68.57%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE  ID VPPHLLADE+DD+D      D+    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNE--IDVVPPHLLADEEDDED-----GDEHVTT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHC--ILGIFCSLSKAIERKASNGMNSVRIMVRT 120
           S +SNY FP+ G F     +D + DG H   ILGIFCSLSK IE++ASNGM+SVRI+VRT
Sbjct: 61  STISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRT 120

Query: 121 ILGFLMVMTIKIISAQTSKL 139
           ILGFLMVMT+KIISAQ SK+
Sbjct: 121 ILGFLMVMTMKIISAQRSKM 133

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-10
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLADEDDDD 48
          M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLADED+++
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELE-PPPHLLADEEEKEE 47

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELE-PPPHLLADEEEKEE 47

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: A0A0D3C161_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 3  VSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENV 60
          VS+EALAMAG D  EW +  QEWE  E+    VPPHLLAD+ + D+++   N+D+ V
Sbjct: 2  VSMEALAMAGTDYQEWGLSVQEWELQES---VVPPHLLADDSEKDEEEDYQNEDDRV 55

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 4.5e-41
Identity = 96/140 (68.57%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE  ID VPPHLLADE+DD+D      D+    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNE--IDVVPPHLLADEEDDED-----GDEHVTT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHC--ILGIFCSLSKAIERKASNGMNSVRIMVRT 120
           S +SNY FP+ G F     +D + DG H   ILGIFCSLSK IE++ASNGM+SVRI+VRT
Sbjct: 61  STISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRT 120

Query: 121 ILGFLMVMTIKIISAQTSKL 139
           ILGFLMVMT+KIISAQ SK+
Sbjct: 121 ILGFLMVMTMKIISAQRSKM 133

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|729468301|ref|XP_010526659.1| (PREDICTED: prostatic spermine-binding protein [Tarenaya hassleriana])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 31/61 (50.82%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDN---DDE 59
          M+VSLEALAMAG D  +W +D +EWE  ++++D VPPHLLAD+D+++ ++ +D+   DDE
Sbjct: 1  MAVSLEALAMAGADYRQWGLDIEEWEDQDSDVDHVPPHLLADDDEEEQEEHDDHQPRDDE 60

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 4.1e-10
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLADEDDDD 48
          M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLADED+++
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELE-PPPHLLADEEEKEE 47

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELE-PPPHLLADEEEKEE 47

The following BLAST results are available for this feature:

BLAST of Cla010676 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE7_CUCSA	3.1e-41	68.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1	[more]
A0A0A0KU90_CUCSA	2.8e-10	68.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1	[more]
V4SW68_9ROSI	7.7e-08	60.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1	[more]
V4SR82_9ROSI	1.0e-07	60.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1	[more]
A0A0D3C161_BRAOL	1.7e-07	50.88	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of Cla010676 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198046\|gb\|KGN53204.1\|	4.5e-41	68.57	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
gi\|729468301\|ref\|XP_010526659.1\|	3.1e-10	50.82	PREDICTED: prostatic spermine-binding protein [Tarenaya hassleriana]	[more]
gi\|700198047\|gb\|KGN53205.1\|	4.1e-10	68.00	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]
gi\|567871119\|ref\|XP_006428181.1\|	1.1e-07	60.42	hypothetical protein CICLE_v10027431mg [Citrus clementina]	[more]
gi\|567871177\|ref\|XP_006428210.1\|	1.5e-07	60.42	hypothetical protein CICLE_v10027432mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010676	Cla010676.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010676	Cla97C07G144390	Watermelon (97103) v2	wmwmbB174
Cla010676	Csa4G026810	Cucumber (Chinese Long) v2	cuwmB312
Cla010676	MELO3C017608	Melon (DHL92) v3.5.1	mewmB506
Cla010676	ClCG07G017350	Watermelon (Charleston Gray)	wcgwmB372
Cla010676	CSPI04G04480	Wild cucumber (PI 183967)	cpiwmB315
Cla010676	Cucsa.093760	Cucumber (Gy14) v1	cgywmB117
Cla010676	CmaCh04G008160	Cucurbita maxima (Rimu)	cmawmB689
Cla010676	CmaCh16G007030	Cucurbita maxima (Rimu)	cmawmB312
Cla010676	CmoCh16G007600	Cucurbita moschata (Rifu)	cmowmB306
Cla010676	Lsi07G001530	Bottle gourd (USVL1VR-Ls)	lsiwmB441
Cla010676	Cp4.1LG14g01100	Cucurbita pepo (Zucchini)	cpewmB223
Cla010676	Cp4.1LG01g09170	Cucurbita pepo (Zucchini)	cpewmB415
Cla010676	CsGy4G004380	Cucumber (Gy14) v2	cgybwmB290
Cla010676	MELO3C017608.2	Melon (DHL92) v3.6.1	medwmB493
Cla010676	Carg05815	Silver-seed gourd	carwmB1019
Cla010676	CsaV3_UNG120960	Cucumber (Chinese Long) v3	cucwmB379
Cla010676	CsaV3_4G004580	Cucumber (Chinese Long) v3	cucwmB324
Cla010676	CsaV3_UNG223590	Cucumber (Chinese Long) v3	cucwmB381
Cla010676	Bhi01G001957	Wax gourd	wgowmB176

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010676	Silver-seed gourd	carwmB0369
Cla010676	Silver-seed gourd	carwmB0873
Cla010676	Silver-seed gourd	carwmB0941
Cla010676	Cucumber (Chinese Long) v3	cucwmB378
Cla010676	Cucurbita maxima (Rimu)	cmawmB313
Cla010676	Cucurbita maxima (Rimu)	cmawmB693
Cla010676	Cucurbita moschata (Rifu)	cmowmB307
Cla010676	Cucurbita moschata (Rifu)	cmowmB682
Cla010676	Cucurbita pepo (Zucchini)	cpewmB224
Cla010676	Cucurbita pepo (Zucchini)	cpewmB421