Cla010676.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010676
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 28766729 .. 28767145 (-)
Sequence length	417

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

Homology

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-41
Identity = 96/140 (68.57%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE  ID VPPHLLADE+DD+D      D+    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNE--IDVVPPHLLADEEDDED-----GDEHVTT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHC--ILGIFCSLSKAIERKASNGMNSVRIMVRT 120
           S +SNY FP+ G F     +D + DG H   ILGIFCSLSK IE++ASNGM+SVRI+VRT
Sbjct: 61  STISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRT 120

Query: 121 ILGFLMVMTIKIISAQTSKL 139
           ILGFLMVMT+KIISAQ SK+
Sbjct: 121 ILGFLMVMTMKIISAQRSKM 133

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-10
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLADEDDDD 48
          M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLADED+++
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELE-PPPHLLADEEEKEE 47

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELE-PPPHLLADEEEKEE 47

[Close]

BLAST of Cla010676 vs. TrEMBL
Match: A0A0D3C161_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 3  VSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENV 60
          VS+EALAMAG D  EW +  QEWE  E+    VPPHLLAD+ + D+++   N+D+ V
Sbjct: 2  VSMEALAMAGTDYQEWGLSVQEWELQES---VVPPHLLADDSEKDEEEDYQNEDDRV 55

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 4.5e-41
Identity = 96/140 (68.57%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE  ID VPPHLLADE+DD+D      D+    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNE--IDVVPPHLLADEEDDED-----GDEHVTT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHC--ILGIFCSLSKAIERKASNGMNSVRIMVRT 120
           S +SNY FP+ G F     +D + DG H   ILGIFCSLSK IE++ASNGM+SVRI+VRT
Sbjct: 61  STISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRT 120

Query: 121 ILGFLMVMTIKIISAQTSKL 139
           ILGFLMVMT+KIISAQ SK+
Sbjct: 121 ILGFLMVMTMKIISAQRSKM 133

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|729468301|ref|XP_010526659.1| (PREDICTED: prostatic spermine-binding protein [Tarenaya hassleriana])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 31/61 (50.82%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDN---DDE 59
          M+VSLEALAMAG D  +W +D +EWE  ++++D VPPHLLAD+D+++ ++ +D+   DDE
Sbjct: 1  MAVSLEALAMAGADYRQWGLDIEEWEDQDSDVDHVPPHLLADDDEEEQEEHDDHQPRDDE 60

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 4.1e-10
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLADEDDDD 48
          M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLADED+++
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELE-PPPHLLADEEEKEE 47

[Close]

BLAST of Cla010676 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDD 49
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLADE++ ++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELE-PPPHLLADEEEKEE 47

The following BLAST results are available for this feature:

BLAST of Cla010676 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE7_CUCSA	3.1e-41	68.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1	[more]
A0A0A0KU90_CUCSA	2.8e-10	68.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1	[more]
V4SW68_9ROSI	7.7e-08	60.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1	[more]
V4SR82_9ROSI	1.0e-07	60.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1	[more]
A0A0D3C161_BRAOL	1.7e-07	50.88	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of Cla010676 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198046\|gb\|KGN53204.1\|	4.5e-41	68.57	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
gi\|729468301\|ref\|XP_010526659.1\|	3.1e-10	50.82	PREDICTED: prostatic spermine-binding protein [Tarenaya hassleriana]	[more]
gi\|700198047\|gb\|KGN53205.1\|	4.1e-10	68.00	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]
gi\|567871119\|ref\|XP_006428181.1\|	1.1e-07	60.42	hypothetical protein CICLE_v10027431mg [Citrus clementina]	[more]
gi\|567871177\|ref\|XP_006428210.1\|	1.5e-07	60.42	hypothetical protein CICLE_v10027432mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla010676	Cla010676	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla010676	Cla010676.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla010676.1.cds1	Cla010676.1.cds1	CDS