Cp4.1LG01g09170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g09170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 4334222 .. 4334587 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAAGGAAATGGAGAATGACATTCCGCCTCATTTATTAGCCGATGAAGACTACGAGGAAGACGAAATGAGTACTAAGTTTCCAGCCACCAGATGCAGCTGCTGCCGGAAAGATGACGGTGTTGGCGGTGTGTCCTTCTCTCCGACGATCATGTGGCATTTGAGAAAAATCACAGAGAAGAGAGATTTGAATTGCCTGAGCTCAATGGAAATAGTGACCAGCGCTGTTGTAGGGTTCCTAATGTTAATGACCATAAAGATAATAGCTTCAAAAAGATCCAAATCCTAA

mRNA sequence

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAAGGAAATGGAGAATGACATTCCGCCTCATTTATTAGCCGATGAAGACTACGAGGAAGACGAAATGAGTACTAAGTTTCCAGCCACCAGATGCAGCTGCTGCCGGAAAGATGACGGTGTTGGCGGTGTGTCCTTCTCTCCGACGATCATGTGGCATTTGAGAAAAATCACAGAGAAGAGAGATTTGAATTGCCTGAGCTCAATGGAAATAGTGACCAGCGCTGTTGTAGGGTTCCTAATGTTAATGACCATAAAGATAATAGCTTCAAAAAGATCCAAATCCTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAAGGAAATGGAGAATGACATTCCGCCTCATTTATTAGCCGATGAAGACTACGAGGAAGACGAAATGAGTACTAAGTTTCCAGCCACCAGATGCAGCTGCTGCCGGAAAGATGACGGTGTTGGCGGTGTGTCCTTCTCTCCGACGATCATGTGGCATTTGAGAAAAATCACAGAGAAGAGAGATTTGAATTGCCTGAGCTCAATGGAAATAGTGACCAGCGCTGTTGTAGGGTTCCTAATGTTAATGACCATAAAGATAATAGCTTCAAAAAGATCCAAATCCTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMSTKFPATRCSCCRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMLMTIKIIASKRSKS
Homology
[Close]
BLAST of Cp4.1LG01g09170 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.1e-21
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 1 

Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEED------------- 60
           MSVSLEALAMAGIDSNEWAMDAEEWER E++  +PPHLLADE+ +ED             
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  --EMSTKFPATRCSCCRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGF 120
              +   F   R   C+ D G G       I   L K+ EKR  N +SS+ I+   ++GF
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILG--IFCSLSKVIEKRASNGMSSVRIIVRTILGF 120

[Close]
BLAST of Cp4.1LG01g09170 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 1 

Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERK--EMEND--IPPHLLADEDYEEDEMSTKFPAT 60
          M VSLEALAMAGIDSNEWAMDAEEW+    +MEND  IPPHLLADED  E+ ++ K    
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADED--EENIAAK--EL 60

Query: 61 RCSCCRKDDGVGGVSFSPTIMWHLRKITEKR 88
            S  RKDDG+            LRK+ EKR
Sbjct: 61 CISGHRKDDGLVVFCAFRRSYAILRKMMEKR 87

[Close]
BLAST of Cp4.1LG01g09170 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 

Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMST 52
          MSVS+EALAMAG D  EW MD EEWER+++E + PPHLLADE+ +E+ +ST
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLST 51

[Close]
BLAST of Cp4.1LG01g09170 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 

Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMST 52
          MSVS+EALAMAG D  EW MD EEWER+++E + PPHLLADE+ +E+ +ST
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLST 51

[Close]
BLAST of Cp4.1LG01g09170 vs. TrEMBL
Match: A0A0D2P3G6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEED----EMSTKFPAT 60
          M+VS+EALAMAG+D NEW +D E+WE  +  +  PPHLLA+E+ EE     E  T+   T
Sbjct: 1  MTVSIEALAMAGVDYNEWGLDIEKWEDDDDSHCPPPHLLAEENEEEPARVVEQGTRIIGT 60

Query: 61 RCSCCRKDDGVGG 70
               R +D  GG
Sbjct: 61 SSPTRRSEDDAGG 73

[Close]
BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 1 

Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEED------------- 60
           MSVSLEALAMAGIDSNEWAMDAEEWER E++  +PPHLLADE+ +ED             
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  --EMSTKFPATRCSCCRKDDGVGGVSFSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGF 120
              +   F   R   C+ D G G       I   L K+ EKR  N +SS+ I+   ++GF
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILG--IFCSLSKVIEKRASNGMSSVRIIVRTILGF 120

[Close]
BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-11
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 1 

Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERK--EMEND--IPPHLLADEDYEEDEMSTKFPAT 60
          M VSLEALAMAGIDSNEWAMDAEEW+    +MEND  IPPHLLADED  E+ ++ K    
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADED--EENIAAK--EL 60

Query: 61 RCSCCRKDDGVGGVSFSPTIMWHLRKITEKR 88
            S  RKDDG+            LRK+ EKR
Sbjct: 61 CISGHRKDDGLVVFCAFRRSYAILRKMMEKR 87

[Close]
BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-09
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 

Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMST 52
          MSVS+EALAMAG D  EW MD EEWER+++E + PPHLLADE+ +E+ +ST
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLST 51

[Close]
BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-09
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 

Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEEDEMST 52
          MSVS+EALAMAG D  EW MD EEWER+++E + PPHLLADE+ +E+ +ST
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLST 51

[Close]
BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match: gi|763753760|gb|KJB21148.1| (hypothetical protein B456_003G185100 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 1  MSVSLEALAMAGIDSNEWAMDAEEWERKEMENDIPPHLLADEDYEED----EMSTKFPAT 60
          M+VS+EALAMAG+D NEW +D E+WE  +  +  PPHLLA+E+ EE     E  T+   T
Sbjct: 1  MTVSIEALAMAGVDYNEWGLDIEKWEDDDDSHCPPPHLLAEENEEEPARVVEQGTRIIGT 60

Query: 61 RCSCCRKDDGVGG 70
               R +D  GG
Sbjct: 61 SSPTRRSEDDAGG 73

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g09170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g09170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWE7_CUCSA9.1e-2148.89Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1[more]
A0A0A0KU90_CUCSA2.3e-1157.14Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1[more]
V4SR82_9ROSI3.6e-0964.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1[more]
V4SW68_9ROSI3.6e-0964.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1[more]
A0A0D2P3G6_GOSRA1.5e-0746.58Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1[more]
BLAST of Cp4.1LG01g09170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g09170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198046|gb|KGN53204.1|1.3e-2048.89hypothetical protein Csa_4G026810 [Cucumis sativus][more]
gi|700198047|gb|KGN53205.1|3.2e-1157.14hypothetical protein Csa_4G026820 [Cucumis sativus][more]
gi|567871119|ref|XP_006428181.1|5.2e-0964.71hypothetical protein CICLE_v10027431mg [Citrus clementina][more]
gi|567871177|ref|XP_006428210.1|5.2e-0964.71hypothetical protein CICLE_v10027432mg [Citrus clementina][more]
gi|763753760|gb|KJB21148.1|2.2e-0746.58hypothetical protein B456_003G185100 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g09170.1Cp4.1LG01g09170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g09170Cucsa.093760Cucumber (Gy14) v1cgycpeB0190
Cp4.1LG01g09170CmaCh16G007030Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g09170CmaCh04G008160Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g09170CmoCh16G007600Cucurbita moschata (Rifu)cmocpeB312
Cp4.1LG01g09170Cla010676Watermelon (97103) v1cpewmB415
Cp4.1LG01g09170Csa4G026810Cucumber (Chinese Long) v2cpecuB407
Cp4.1LG01g09170MELO3C017608Melon (DHL92) v3.5.1cpemeB416
Cp4.1LG01g09170ClCG07G017350Watermelon (Charleston Gray)cpewcgB414
Cp4.1LG01g09170CSPI04G04480Wild cucumber (PI 183967)cpecpiB406
Cp4.1LG01g09170Lsi07G001530Bottle gourd (USVL1VR-Ls)cpelsiB377
Cp4.1LG01g09170MELO3C017608.2Melon (DHL92) v3.6.1cpemedB487
Cp4.1LG01g09170CsaV3_UNG120960Cucumber (Chinese Long) v3cpecucB0515
Cp4.1LG01g09170CsaV3_UNG223590Cucumber (Chinese Long) v3cpecucB0516
Cp4.1LG01g09170CsaV3_4G004580Cucumber (Chinese Long) v3cpecucB0504
Cp4.1LG01g09170Bhi01G001957Wax gourdcpewgoB0511
Cp4.1LG01g09170CsGy4G004380Cucumber (Gy14) v2cgybcpeB509
Cp4.1LG01g09170Carg05815Silver-seed gourdcarcpeB1417
Cp4.1LG01g09170Carg00700Silver-seed gourdcarcpeB0562
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g09170Cp4.1LG10g01140Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG01g09170Cp4.1LG14g01100Cucurbita pepo (Zucchini)cpecpeB233
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g09170Cucumber (Gy14) v2cgybcpeB507
Cp4.1LG01g09170Cucumber (Gy14) v2cgybcpeB808
Cp4.1LG01g09170Melon (DHL92) v3.6.1cpemedB504
Cp4.1LG01g09170Melon (DHL92) v3.6.1cpemedB509
Cp4.1LG01g09170Silver-seed gourdcarcpeB1302
Cp4.1LG01g09170Cucumber (Chinese Long) v3cpecucB0514
Cp4.1LG01g09170Cucumber (Chinese Long) v3cpecucB0581
Cp4.1LG01g09170Cucurbita pepo (Zucchini)cpecpeB385
Cp4.1LG01g09170Cucumber (Gy14) v1cgycpeB0219
Cp4.1LG01g09170Cucurbita maxima (Rimu)cmacpeB876
Cp4.1LG01g09170Cucurbita moschata (Rifu)cmocpeB613
Cp4.1LG01g09170Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g09170Cucurbita moschata (Rifu)cmocpeB813
Cp4.1LG01g09170Wild cucumber (PI 183967)cpecpiB468
Cp4.1LG01g09170Cucumber (Chinese Long) v2cpecuB469
Cp4.1LG01g09170Bottle gourd (USVL1VR-Ls)cpelsiB326
Cp4.1LG01g09170Watermelon (Charleston Gray)cpewcgB374
Cp4.1LG01g09170Watermelon (97103) v1cpewmB443
Cp4.1LG01g09170Melon (DHL92) v3.5.1cpemeB434