Cp4.1LG10g01140 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g01140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 3279160 .. 3279357 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTCTCTTTGGAAGCTCTGGCAATGGCCGGGATGGACTCCGGCGACTGGGGCATAGATGTTGAGGAATGGGAAACCCAAGACTTGGACCGCTGCCCTCCCCCGTATCTCCTCGCCGAAGAACGAGATGACGATGAAACTTCAGAACAACCAGGTCGTTCTGAGCCACCGTCGCAGAGTCGCCGGCGATCATGA

mRNA sequence

ATGTCTGTCTCTTTGGAAGCTCTGGCAATGGCCGGGATGGACTCCGGCGACTGGGGCATAGATGTTGAGGAATGGGAAACCCAAGACTTGGACCGCTGCCCTCCCCCGTATCTCCTCGCCGAAGAACGAGATGACGATGAAACTTCAGAACAACCAGGTCGTTCTGAGCCACCGTCGCAGAGTCGCCGGCGATCATGA

Coding sequence (CDS)

ATGTCTGTCTCTTTGGAAGCTCTGGCAATGGCCGGGATGGACTCCGGCGACTGGGGCATAGATGTTGAGGAATGGGAAACCCAAGACTTGGACCGCTGCCCTCCCCCGTATCTCCTCGCCGAAGAACGAGATGACGATGAAACTTCAGAACAACCAGGTCGTTCTGAGCCACCGTCGCAGAGTCGCCGGCGATCATGA

Protein sequence

MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDDETSEQPGRSEPPSQSRRRS
Homology
[Close]
BLAST of Cp4.1LG10g01140 vs. TrEMBL
Match: A0A0A0KK23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499860 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.6e-14
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 1 

Query: 2  SVSLEALAMAGMD-SGDWGIDVEEWETQDLDRCPPPYLLAEER--DDDETSEQ--PGRSE 61
          SVSLEA AMAGM+ SG+WGIDVEEWE+QDLD CPPPYLLAE R  D+D+ S++  P  SE
Sbjct: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSLSE 62

Query: 62 PPSQSRR 64
          PPSQ+ R
Sbjct: 63 PPSQACR 69

[Close]
BLAST of Cp4.1LG10g01140 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.8e-08
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDDE 48
          MSVS+EALAMAG D  +WG+DVEEWE +D++  PPP+LLA+E + +E
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEE 47

[Close]
BLAST of Cp4.1LG10g01140 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-08
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDDE 48
          MSVS+EALAMAG D  +WG+DVEEWE +D++  PPP+LLA+E + +E
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

[Close]
BLAST of Cp4.1LG10g01140 vs. TrEMBL
Match: G7J3Q9_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g087110 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-08
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDD 46
          M VSLEALAMAG  S ++GID+EEWE  DL++ PPP+LLA+E DD
Sbjct: 1  MVVSLEALAMAGTSSVEYGIDIEEWERNDLEQYPPPHLLAQEEDD 45

[Close]
BLAST of Cp4.1LG10g01140 vs. TrEMBL
Match: A0A0D2P3G6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-07
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDD--ETSEQPGRSEPP 60
          M+VS+EALAMAG+D  +WG+D+E+WE  D   CPPP+LLAEE +++     EQ  R    
Sbjct: 1  MTVSIEALAMAGVDYNEWGLDIEKWEDDDDSHCPPPHLLAEENEEEPARVVEQGTRIIGT 60

Query: 61 SQSRRRS 66
          S   RRS
Sbjct: 61 SSPTRRS 67

[Close]
BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: gi|700193538|gb|KGN48742.1| (hypothetical protein Csa_6G499860 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 1 

Query: 2  SVSLEALAMAGMD-SGDWGIDVEEWETQDLDRCPPPYLLAEER--DDDETSEQ--PGRSE 61
          SVSLEA AMAGM+ SG+WGIDVEEWE+QDLD CPPPYLLAE R  D+D+ S++  P  SE
Sbjct: 3  SVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSLSE 62

Query: 62 PPSQSRR 64
          PPSQ+ R
Sbjct: 63 PPSQACR 69

[Close]
BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: gi|659080058|ref|XP_008440588.1| (PREDICTED: uncharacterized protein LOC103484965 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-12
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1 

Query: 2  SVSLEALAMAGMD-SGDWGIDVEEWETQDLDRCPPPYLLAEERDDDETS-------EQPG 61
          SVSLEA AMAGM+ SG+WGIDVE+WE+QDLD CPPPYLLAE R +D  +       ++P 
Sbjct: 3  SVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQRPS 62

Query: 62 RSEPPSQSRR 64
           SEPPSQ+ R
Sbjct: 63 LSEPPSQACR 72

[Close]
BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-08
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDDE 48
          MSVS+EALAMAG D  +WG+DVEEWE +D++  PPP+LLA+E + +E
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEE 47

[Close]
BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: gi|357463323|ref|XP_003601943.1| (hypothetical protein MTR_3g087110 [Medicago truncatula])

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-08
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDD 46
          M VSLEALAMAG  S ++GID+EEWE  DL++ PPP+LLA+E DD
Sbjct: 1  MVVSLEALAMAGTSSVEYGIDIEEWERNDLEQYPPPHLLAQEEDD 45

[Close]
BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-08
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 

Query: 1  MSVSLEALAMAGMDSGDWGIDVEEWETQDLDRCPPPYLLAEERDDDE 48
          MSVS+EALAMAG D  +WG+DVEEWE +D++  PPP+LLA+E + +E
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g01140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g01140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK23_CUCSA7.6e-1470.15Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499860 PE=4 SV=1[more]
V4SR82_9ROSI2.8e-0861.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1[more]
V4SW68_9ROSI3.6e-0861.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1[more]
G7J3Q9_MEDTR3.6e-0866.67Uncharacterized protein OS=Medicago truncatula GN=MTR_3g087110 PE=4 SV=1[more]
A0A0D2P3G6_GOSRA1.1e-0750.75Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1[more]
BLAST of Cp4.1LG10g01140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g01140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193538|gb|KGN48742.1|1.1e-1370.15hypothetical protein Csa_6G499860 [Cucumis sativus][more]
gi|659080058|ref|XP_008440588.1|2.1e-1262.86PREDICTED: uncharacterized protein LOC103484965 [Cucumis melo][more]
gi|567871177|ref|XP_006428210.1|4.0e-0861.70hypothetical protein CICLE_v10027432mg [Citrus clementina][more]
gi|357463323|ref|XP_003601943.1|5.2e-0866.67hypothetical protein MTR_3g087110 [Medicago truncatula][more]
gi|567871119|ref|XP_006428181.1|5.2e-0861.70hypothetical protein CICLE_v10027431mg [Citrus clementina][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g01140.1Cp4.1LG10g01140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g01140CmaCh04G008160Cucurbita maxima (Rimu)cmacpeB702
Cp4.1LG10g01140Csa6G499860Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g01140MELO3C007751Melon (DHL92) v3.5.1cpemeB060
Cp4.1LG10g01140ClCG01G018710Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g01140CSPI06G30170Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g01140MELO3C007751.2Melon (DHL92) v3.6.1cpemedB080
Cp4.1LG10g01140MELO3C017608.2Melon (DHL92) v3.6.1cpemedB079
Cp4.1LG10g01140CsaV3_6G045370Cucumber (Chinese Long) v3cpecucB0092
Cp4.1LG10g01140Bhi03G000897Wax gourdcpewgoB0084
Cp4.1LG10g01140CsGy6G029650Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g01140Carg05815Silver-seed gourdcarcpeB1413
Cp4.1LG10g01140Carg00700Silver-seed gourdcarcpeB0554
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g01140Cp4.1LG14g01100Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG10g01140Cp4.1LG01g09170Cucurbita pepo (Zucchini)cpecpeB073
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g01140Wax gourdcpewgoB0077
Cp4.1LG10g01140Cucurbita pepo (Zucchini)cpecpeB063
Cp4.1LG10g01140Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g01140Cucurbita pepo (Zucchini)cpecpeB104
Cp4.1LG10g01140Cucumber (Gy14) v1cgycpeB0211
Cp4.1LG10g01140Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g01140Cucurbita maxima (Rimu)cmacpeB765
Cp4.1LG10g01140Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g01140Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g01140Cucurbita moschata (Rifu)cmocpeB655
Cp4.1LG10g01140Cucurbita moschata (Rifu)cmocpeB719
Cp4.1LG10g01140Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g01140Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g01140Bottle gourd (USVL1VR-Ls)cpelsiB068
Cp4.1LG10g01140Watermelon (Charleston Gray)cpewcgB087
Cp4.1LG10g01140Watermelon (97103) v1cpewmB067
Cp4.1LG10g01140Watermelon (97103) v1cpewmB073
Cp4.1LG10g01140Silver-seed gourdcarcpeB0078
Cp4.1LG10g01140Silver-seed gourdcarcpeB1064
Cp4.1LG10g01140Silver-seed gourdcarcpeB1300