ClCG01G018710 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G018710
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 33196601 .. 33196804 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCAGTCTCTTTGGAAGCTCTGGCAATGGCCGGAATGGACTCCGGCAAGTGGGGACTAGATGTTGAGGAATGGGAAAGCCAAGACTTGCACCACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGATGACGATAACGAAGCTGCAGATCAACAACCAAGTCCTACTGATCCACCGTCGCAGACCCGCCGCCCATGA

mRNA sequence

ATGTCGTCAGTCTCTTTGGAAGCTCTGGCAATGGCCGGAATGGACTCCGGCAAGTGGGGACTAGATGTTGAGGAATGGGAAAGCCAAGACTTGCACCACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGATGACGATAACGAAGCTGCAGATCAACAACCAAGTCCTACTGATCCACCGTCGCAGACCCGCCGCCCATGA

Coding sequence (CDS)

ATGTCGTCAGTCTCTTTGGAAGCTCTGGCAATGGCCGGAATGGACTCCGGCAAGTGGGGACTAGATGTTGAGGAATGGGAAAGCCAAGACTTGCACCACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGATGACGATAACGAAGCTGCAGATCAACAACCAAGTCCTACTGATCCACCGTCGCAGACCCGCCGCCCATGA

Protein sequence

MSSVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNEAADQQPSPTDPPSQTRRP

Homology

[Close]

BLAST of ClCG01G018710 vs. TrEMBL
Match: A0A0A0KK23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499860 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.0e-18
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1  MSSVSLEALAMAGMD-SGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNEAA--DQQPSP 60
          MSSVSLEA AMAGM+ SG+WG+DVEEWESQDL +CPPPYLLAEGR +DN+ A  +Q PS 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60

Query: 61 TDPPSQTRR 67
          ++PPSQ  R
Sbjct: 61 SEPPSQACR 69

[Close]

BLAST of ClCG01G018710 vs. TrEMBL
Match: A0A0D2P3G6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.6e-09
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDD 48
          +VS+EALAMAG+D  +WGLD+E+WE  D  HCPPP+LLAE  +++
Sbjct: 2  TVSIEALAMAGVDYNEWGLDIEKWEDDDDSHCPPPHLLAEENEEE 46

[Close]

BLAST of ClCG01G018710 vs. TrEMBL
Match: G7J3Q9_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g087110 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 4  VSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDD 47
          VSLEALAMAG  S ++G+D+EEWE  DL   PPP+LLA+  DD
Sbjct: 3  VSLEALAMAGTSSVEYGIDIEEWERNDLEQYPPPHLLAQEEDD 45

[Close]

BLAST of ClCG01G018710 vs. TrEMBL
Match: A0A0D2QES3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G039700 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-06
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNE 50
          SVS+EALAMAG+D  +WG+DVEEWE  D    PPP+LLA+G +++ +
Sbjct: 2  SVSIEALAMAGVDYMEWGMDVEEWEHDD--ELPPPHLLADGDNEEEK 46

[Close]

BLAST of ClCG01G018710 vs. TrEMBL
Match: A0A061DJF8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_001093 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-06
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDD 48
          SVS+EALAMAG+D  +WG+++EEWE +DL   PPP+LLAE  ++D
Sbjct: 2  SVSIEALAMAGIDYLEWGMEIEEWELEDLE--PPPHLLAEEAEED 44

[Close]

BLAST of ClCG01G018710 vs. TAIR10
Match: AT2G22320.1 (AT2G22320.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.4e-06
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 1


Query: 6  LEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNEAADQQPSPTD 60
          +EALAMAG+D  +WGL +EEWE Q+     P +LLA+   ++ +  D Q +  D
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQE--SVVPLHLLADDFKEEEQEEDHQDNDDD 52

[Close]

BLAST of ClCG01G018710 vs. NCBI nr
Match: gi|700193538|gb|KGN48742.1| (hypothetical protein Csa_6G499860 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-18
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1  MSSVSLEALAMAGMD-SGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNEAA--DQQPSP 60
          MSSVSLEA AMAGM+ SG+WG+DVEEWESQDL +CPPPYLLAEGR +DN+ A  +Q PS 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60

Query: 61 TDPPSQTRR 67
          ++PPSQ  R
Sbjct: 61 SEPPSQACR 69

[Close]

BLAST of ClCG01G018710 vs. NCBI nr
Match: gi|659080058|ref|XP_008440588.1| (PREDICTED: uncharacterized protein LOC103484965 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1


Query: 1  MSSVSLEALAMAGMD-SGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNE----AADQQ- 60
          MSSVSLEA AMAGM+ SG+WG+DVE+WESQDL +CPPPYLLAEGR +DN+    A+DQQ 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60

Query: 61 PSPTDPPSQTRR 67
          PS ++PPSQ  R
Sbjct: 61 PSLSEPPSQACR 72

[Close]

BLAST of ClCG01G018710 vs. NCBI nr
Match: gi|763753760|gb|KJB21148.1| (hypothetical protein B456_003G185100 [Gossypium raimondii])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDD 48
          +VS+EALAMAG+D  +WGLD+E+WE  D  HCPPP+LLAE  +++
Sbjct: 2  TVSIEALAMAGVDYNEWGLDIEKWEDDDDSHCPPPHLLAEENEEE 46

[Close]

BLAST of ClCG01G018710 vs. NCBI nr
Match: gi|357463323|ref|XP_003601943.1| (hypothetical protein MTR_3g087110 [Medicago truncatula])

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 4  VSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDD 47
          VSLEALAMAG  S ++G+D+EEWE  DL   PPP+LLA+  DD
Sbjct: 3  VSLEALAMAGTSSVEYGIDIEEWERNDLEQYPPPHLLAQEEDD 45

[Close]

BLAST of ClCG01G018710 vs. NCBI nr
Match: gi|729468301|ref|XP_010526659.1| (PREDICTED: prostatic spermine-binding protein [Tarenaya hassleriana])

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 1


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQ--DLHHCPPPYLLAEGRDDDNEAADQQP 56
          +VSLEALAMAG D  +WGLD+EEWE Q  D+ H PP  L  +  ++  E  D QP
Sbjct: 2  AVSLEALAMAGADYRQWGLDIEEWEDQDSDVDHVPPHLLADDDEEEQEEHDDHQP 56

The following BLAST results are available for this feature:

BLAST of ClCG01G018710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK23_CUCSA	4.0e-18	71.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499860 PE=4 SV=1	[more]
A0A0D2P3G6_GOSRA	7.6e-09	60.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1	[more]
G7J3Q9_MEDTR	1.2e-06	62.79	Uncharacterized protein OS=Medicago truncatula GN=MTR_3g087110 PE=4 SV=1	[more]
A0A0D2QES3_GOSRA	2.1e-06	57.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G039700 PE=4 SV=1	[more]
A0A061DJF8_THECC	2.1e-06	60.00	Uncharacterized protein OS=Theobroma cacao GN=TCM_001093 PE=4 SV=1	[more]

BLAST of ClCG01G018710 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22320.1	5.4e-06	42.59	unknown protein	[more]

BLAST of ClCG01G018710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193538\|gb\|KGN48742.1\|	5.7e-18	71.01	hypothetical protein Csa_6G499860 [Cucumis sativus]	[more]
gi\|659080058\|ref\|XP_008440588.1\|	2.9e-17	69.44	PREDICTED: uncharacterized protein LOC103484965 [Cucumis melo]	[more]
gi\|763753760\|gb\|KJB21148.1\|	1.1e-08	60.00	hypothetical protein B456_003G185100 [Gossypium raimondii]	[more]
gi\|357463323\|ref\|XP_003601943.1\|	1.7e-06	62.79	hypothetical protein MTR_3g087110 [Medicago truncatula]	[more]
gi\|729468301\|ref\|XP_010526659.1\|	1.7e-06	52.73	PREDICTED: prostatic spermine-binding protein [Tarenaya hassleriana]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G018710.1	ClCG01G018710.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G018710	Csa6G499860	Cucumber (Chinese Long) v2	cuwcgB432
ClCG01G018710	MELO3C007751	Melon (DHL92) v3.5.1	mewcgB514
ClCG01G018710	Cla97C01G018110	Watermelon (97103) v2	wcgwmbB089
ClCG01G018710	Bhi03G000897	Wax gourd	wcgwgoB223
ClCG01G018710	CSPI06G30170	Wild cucumber (PI 183967)	cpiwcgB453
ClCG01G018710	CmoCh03G008510	Cucurbita moschata (Rifu)	cmowcgB575
ClCG01G018710	Cp4.1LG10g01140	Cucurbita pepo (Zucchini)	cpewcgB061
ClCG01G018710	CsGy6G029650	Cucumber (Gy14) v2	cgybwcgB399
ClCG01G018710	MELO3C007751.2	Melon (DHL92) v3.6.1	medwcgB509
ClCG01G018710	Carg00700	Silver-seed gourd	carwcgB0397
ClCG01G018710	Carg05815	Silver-seed gourd	carwcgB0994
ClCG01G018710	CsaV3_6G045370	Cucumber (Chinese Long) v3	cucwcgB455

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G018710	Wild cucumber (PI 183967)	cpiwcgB122
ClCG01G018710	Cucumber (Chinese Long) v2	cuwcgB115
ClCG01G018710	Melon (DHL92) v3.5.1	mewcgB279
ClCG01G018710	Watermelon (97103) v1	wcgwmB122
ClCG01G018710	Watermelon (97103) v1	wcgwmB141
ClCG01G018710	Cucurbita pepo (Zucchini)	cpewcgB102
ClCG01G018710	Cucurbita pepo (Zucchini)	cpewcgB204
ClCG01G018710	Cucurbita pepo (Zucchini)	cpewcgB374
ClCG01G018710	Cucurbita pepo (Zucchini)	cpewcgB425
ClCG01G018710	Cucurbita pepo (Zucchini)	cpewcgB731
ClCG01G018710	Bottle gourd (USVL1VR-Ls)	lsiwcgB127
ClCG01G018710	Bottle gourd (USVL1VR-Ls)	lsiwcgB426
ClCG01G018710	Cucumber (Gy14) v2	cgybwcgB112
ClCG01G018710	Melon (DHL92) v3.6.1	medwcgB269
ClCG01G018710	Silver-seed gourd	carwcgB0061
ClCG01G018710	Silver-seed gourd	carwcgB0631
ClCG01G018710	Silver-seed gourd	carwcgB0732
ClCG01G018710	Silver-seed gourd	carwcgB0915
ClCG01G018710	Cucumber (Chinese Long) v3	cucwcgB129
ClCG01G018710	Watermelon (97103) v2	wcgwmbB124
ClCG01G018710	Wax gourd	wcgwgoB218
ClCG01G018710	Watermelon (Charleston Gray)	wcgwcgB114
ClCG01G018710	Cucumber (Gy14) v1	cgywcgB134
ClCG01G018710	Cucumber (Gy14) v1	cgywcgB277
ClCG01G018710	Cucurbita maxima (Rimu)	cmawcgB155
ClCG01G018710	Cucurbita maxima (Rimu)	cmawcgB754
ClCG01G018710	Cucurbita maxima (Rimu)	cmawcgB579
ClCG01G018710	Cucurbita maxima (Rimu)	cmawcgB692
ClCG01G018710	Cucurbita maxima (Rimu)	cmawcgB639
ClCG01G018710	Cucurbita moschata (Rifu)	cmowcgB755
ClCG01G018710	Cucurbita moschata (Rifu)	cmowcgB143
ClCG01G018710	Cucurbita moschata (Rifu)	cmowcgB641
ClCG01G018710	Cucurbita moschata (Rifu)	cmowcgB698