Cla97C01G018110 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G018110
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
Location	Cla97Chr01 : 31458029 .. 31458232 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCAGTCTCTTTGGAAGCTCTGGCAATGGCCGGAATGGACTCCGGCAAGTGGGGACTAGATGTTGAGGAATGGGAAAGCCAAGACTTGCACCACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGATGACGATAACGAAGCTGCAGATCAACAACCAAGTCCTACTGATCCACCGTCGCAGACCCGCCGCCCATGA

mRNA sequence

ATGTCGTCAGTCTCTTTGGAAGCTCTGGCAATGGCCGGAATGGACTCCGGCAAGTGGGGACTAGATGTTGAGGAATGGGAAAGCCAAGACTTGCACCACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGATGACGATAACGAAGCTGCAGATCAACAACCAAGTCCTACTGATCCACCGTCGCAGACCCGCCGCCCATGA

Coding sequence (CDS)

ATGTCGTCAGTCTCTTTGGAAGCTCTGGCAATGGCCGGAATGGACTCCGGCAAGTGGGGACTAGATGTTGAGGAATGGGAAAGCCAAGACTTGCACCACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGATGACGATAACGAAGCTGCAGATCAACAACCAAGTCCTACTGATCCACCGTCGCAGACCCGCCGCCCATGA

Protein sequence

MSSVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNEAADQQPSPTDPPSQTRRP

Homology

[Close]

BLAST of Cla97C01G018110 vs. NCBI nr
Match: KGN48742.1 (hypothetical protein Csa_6G499860 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-16
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MSSVSLEALAMAGMD-SGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNEAA--DQQPSP 60
          MSSVSLEA AMAGM+ SG+WG+DVEEWESQDL +CPPPYLLAEGR +DN+ A  +Q PS 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60

Query: 61 TDPPSQTRR 67
          ++PPSQ  R
Sbjct: 61 SEPPSQACR 69

[Close]

BLAST of Cla97C01G018110 vs. NCBI nr
Match: XP_022132368.1 (uncharacterized protein LOC111005244 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNE 50
          +VSLEALAMAGMDSG WG+D +EWE+QD    PPPYLLAEG D++ E
Sbjct: 2  TVSLEALAMAGMDSGNWGVDFDEWETQDSDQYPPPYLLAEGPDNEAE 48

[Close]

BLAST of Cla97C01G018110 vs. NCBI nr
Match: GAV84674.1 (hypothetical protein CFOL_v3_28116 [Cephalotus follicularis])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAE 43
          SVSLEALAMAG+D  +WGLD EEWE +DL   PPP+LLAE
Sbjct: 2  SVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAE 41

[Close]

BLAST of Cla97C01G018110 vs. NCBI nr
Match: XP_003601943.1 (uncharacterized protein LOC11415027 [Medicago truncatula] >AES72194.1 hypothetical protein MTR_3g087110 [Medicago truncatula])

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 4  VSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDD 47
          VSLEALAMAG  S ++G+D+EEWE  DL   PPP+LLA+  DD
Sbjct: 3  VSLEALAMAGTSSVEYGIDIEEWERNDLEQYPPPHLLAQEEDD 45

[Close]

BLAST of Cla97C01G018110 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNEAADQQPS 57
          SVSLEALAMAG+DS +W +D EEWE  ++    PP+LLA+  D+++E + + P+
Sbjct: 2  SVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPA 55

[Close]

BLAST of Cla97C01G018110 vs. TrEMBL
Match: tr|A0A0A0KK23|A0A0A0KK23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499860 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-16
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MSSVSLEALAMAGMD-SGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNEAA--DQQPSP 60
          MSSVSLEA AMAGM+ SG+WG+DVEEWESQDL +CPPPYLLAEGR +DN+ A  +Q PS 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDEQPPSL 60

Query: 61 TDPPSQTRR 67
          ++PPSQ  R
Sbjct: 61 SEPPSQACR 69

[Close]

BLAST of Cla97C01G018110 vs. TrEMBL
Match: tr|A0A1Q3CWR7|A0A1Q3CWR7_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAE 43
          SVSLEALAMAG+D  +WGLD EEWE +DL   PPP+LLAE
Sbjct: 2  SVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAE 41

[Close]

BLAST of Cla97C01G018110 vs. TrEMBL
Match: tr|G7J3Q9|G7J3Q9_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11415027 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 4  VSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDD 47
          VSLEALAMAG  S ++G+D+EEWE  DL   PPP+LLA+  DD
Sbjct: 3  VSLEALAMAGTSSVEYGIDIEEWERNDLEQYPPPHLLAQEEDD 45

[Close]

BLAST of Cla97C01G018110 vs. TrEMBL
Match: tr|V4SR82|V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDD 48
          SVS+EALAMAG D  +WG+DVEEWE +D+   PPP+LLA+  + +
Sbjct: 2  SVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKE 46

[Close]

BLAST of Cla97C01G018110 vs. TrEMBL
Match: tr|V4SW68|V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-06
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 3  SVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDD 48
          SVS+EALAMAG D  +WG+DVEEWE +D+   PPP+LLA+  + +
Sbjct: 2  SVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKE 46

[Close]

BLAST of Cla97C01G018110 vs. TAIR10
Match: AT2G22320.1 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 2.3e-04
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 6  LEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAE 43
          +EALAMAG+D  +WGL +EEWE Q+     P +LLA+
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQE--SVVPLHLLAD 35

The following BLAST results are available for this feature:

BLAST of Cla97C01G018110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48742.1	2.8e-16	71.01	hypothetical protein Csa_6G499860 [Cucumis sativus]	[more]
XP_022132368.1	3.9e-10	70.21	uncharacterized protein LOC111005244 [Momordica charantia]	[more]
GAV84674.1	1.8e-07	72.50	hypothetical protein CFOL_v3_28116 [Cephalotus follicularis]	[more]
XP_003601943.1	3.4e-06	62.79	uncharacterized protein LOC11415027 [Medicago truncatula] >AES72194.1 hypothetic...	[more]
XP_022943015.1	4.4e-06	50.00	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]

BLAST of Cla97C01G018110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KK23\|A0A0A0KK23_CUCSA	1.8e-16	71.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499860 PE=4 SV=1	[more]
tr\|A0A1Q3CWR7\|A0A1Q3CWR7_CEPFO	1.2e-07	72.50	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4...	[more]
tr\|G7J3Q9\|G7J3Q9_MEDTR	2.2e-06	62.79	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11415027 PE=4 SV=1	[more]
tr\|V4SR82\|V4SR82_9ROSI	3.8e-06	57.78	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027432mg PE=4 ...	[more]
tr\|V4SW68\|V4SW68_9ROSI	5.0e-06	57.78	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027431mg PE=4 ...	[more]

BLAST of Cla97C01G018110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G018110 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22320.1	2.3e-04	54.05	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G018110.1	Cla97C01G018110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G018110	Csa6G499860	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G018110	MELO3C007751	Melon (DHL92) v3.5.1	mewmbB513
Cla97C01G018110	ClCG01G018710	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G018110	CSPI06G30170	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G018110	CsGy6G029650	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G018110	MELO3C007751.2	Melon (DHL92) v3.6.1	medwmbB505
Cla97C01G018110	CsaV3_6G045370	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G018110	Bhi03G000897	Wax gourd	wgowmbB398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G018110	Watermelon (97103) v2	wmbwmbB041
Cla97C01G018110	Silver-seed gourd	carwmbB0056
Cla97C01G018110	Silver-seed gourd	carwmbB0426
Cla97C01G018110	Silver-seed gourd	carwmbB0677
Cla97C01G018110	Silver-seed gourd	carwmbB0791
Cla97C01G018110	Silver-seed gourd	carwmbB0987
Cla97C01G018110	Silver-seed gourd	carwmbB1073
Cla97C01G018110	Cucumber (Gy14) v2	cgybwmbB093
Cla97C01G018110	Cucumber (Gy14) v2	cgybwmbB254
Cla97C01G018110	Cucumber (Gy14) v1	cgywmbB127
Cla97C01G018110	Cucumber (Gy14) v1	cgywmbB272
Cla97C01G018110	Cucurbita maxima (Rimu)	cmawmbB165
Cla97C01G018110	Cucurbita maxima (Rimu)	cmawmbB331
Cla97C01G018110	Cucurbita maxima (Rimu)	cmawmbB670
Cla97C01G018110	Cucurbita maxima (Rimu)	cmawmbB712
Cla97C01G018110	Cucurbita maxima (Rimu)	cmawmbB801
Cla97C01G018110	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G018110	Cucurbita moschata (Rifu)	cmowmbB150
Cla97C01G018110	Cucurbita moschata (Rifu)	cmowmbB314
Cla97C01G018110	Cucurbita moschata (Rifu)	cmowmbB642
Cla97C01G018110	Cucurbita moschata (Rifu)	cmowmbB682
Cla97C01G018110	Cucurbita moschata (Rifu)	cmowmbB775
Cla97C01G018110	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G018110	Wild cucumber (PI 183967)	cpiwmbB101
Cla97C01G018110	Wild cucumber (PI 183967)	cpiwmbB273
Cla97C01G018110	Cucumber (Chinese Long) v3	cucwmbB103
Cla97C01G018110	Cucumber (Chinese Long) v3	cucwmbB268
Cla97C01G018110	Cucumber (Chinese Long) v2	cuwmbB099
Cla97C01G018110	Cucumber (Chinese Long) v2	cuwmbB266
Cla97C01G018110	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G018110	Bottle gourd (USVL1VR-Ls)	lsiwmbB389
Cla97C01G018110	Bottle gourd (USVL1VR-Ls)	lsiwmbB424
Cla97C01G018110	Melon (DHL92) v3.6.1	medwmbB260
Cla97C01G018110	Melon (DHL92) v3.6.1	medwmbB451
Cla97C01G018110	Melon (DHL92) v3.5.1	mewmbB275
Cla97C01G018110	Melon (DHL92) v3.5.1	mewmbB457
Cla97C01G018110	Watermelon (Charleston Gray)	wcgwmbB316
Cla97C01G018110	Watermelon (97103) v1	wmwmbB080
Cla97C01G018110	Watermelon (97103) v1	wmwmbB234
Cla97C01G018110	Wax gourd	wgowmbB171
Cla97C01G018110	Wax gourd	wgowmbB287