CmaCh04G008160 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G008160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BnaC04g34710D protein
Location	Cma_Chr04 : 4179723 .. 4180335 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCATGTCGGTTTCTTTAGAGGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATGGAGAATGACATTCCGCCTCATTTATTAGCCGTTGAAGACGACGAGGAAGACGAAATGAGTACTAAGTTTCCAGCCACCAGATGCAGCTGCTGCCGGAAAGATGACGGTGTTGGTGGTGTGTCCTGCTCTCCGACGATCATGTGGCATTTGAGAAAAATCGCAGAGAAGAGAGATTTGAATTGCCTGAGCTCAATGGAAATAGTGGCGAGCGCTGTTGTAGGGTTCCTAATGTTAATGACCATAAAGATAATAGCTTCAAAAAGATCCAAATCCTAACAAGAACCGAACAATGTAAGCTTTTCATCAAATTGTTTGATGTAATAATTTGTCCAATTATCTCACATAGCCACAACCACACTCACACAATTGGTTGATCGTTGACCGAGGGTGGCGCGTTGTCCAAGCTGAGCCGAGTCGCACGTGATTTGAGCTGAGATCGTGTGGCTATAGGTTTAGGCTGCAGAACGAACTGGGTCGTGGGCTTTGTGTGAAGGCTGCTGGACTAGAGAGCTTCTAG

mRNA sequence

ATGACCATGTCGGTTTCTTTAGAGGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATGGAGAATGACATTCCGCCTCATTTATTAGCCGTTGAAGACGACGAGGAAGACGAAATGAGTACTAAGTTTCCAGCCACCAGATGCAGCTGCTGCCGGAAAGATGACGGTGTTGGTGGTGTGTCCTGCTCTCCGACGATCATGTGGCATTTGAGAAAAATCGCAGAGAAGAGAGATTTGAATTGCCTGAGCTCAATGGAAATAGTGGCGAGCGCTGTTGTAGGGTTTAGGCTGCAGAACGAACTGGGTCGTGGGCTTTGTGTGAAGGCTGCTGGACTAGAGAGCTTCTAG

Coding sequence (CDS)

ATGACCATGTCGGTTTCTTTAGAGGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATGGAGAATGACATTCCGCCTCATTTATTAGCCGTTGAAGACGACGAGGAAGACGAAATGAGTACTAAGTTTCCAGCCACCAGATGCAGCTGCTGCCGGAAAGATGACGGTGTTGGTGGTGTGTCCTGCTCTCCGACGATCATGTGGCATTTGAGAAAAATCGCAGAGAAGAGAGATTTGAATTGCCTGAGCTCAATGGAAATAGTGGCGAGCGCTGTTGTAGGGTTTAGGCTGCAGAACGAACTGGGTCGTGGGCTTTGTGTGAAGGCTGCTGGACTAGAGAGCTTCTAG

Protein sequence

MTMSVSLEALAMAGIDSNEWAMDAEEWERNEMENDIPPHLLAVEDDEEDEMSTKFPATRCSCCRKDDGVGGVSCSPTIMWHLRKIAEKRDLNCLSSMEIVASAVVGFRLQNELGRGLCVKAAGLESF

Homology

[Close]

BLAST of CmaCh04G008160 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 59/124 (47.58%), Postives = 73/124 (58.87%), Query Frame = 1


Query: 3   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDIPPHLLAVEDDEED------------- 62
           MSVSLEALAMAGIDSNEWAMDAEEWERNE++  +PPHLLA E+D+ED             
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 63  --EMSTKFPATRCSCCRKDDGVG----GVSCSPTIMWHLRKIAEKRDLNCLSSMEIVASA 108
              +   F   R   C+ D G G    G+ CS      L K+ EKR  N +SS+ I+   
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LSKVIEKRASNGMSSVRIIVRT 117

[Close]

BLAST of CmaCh04G008160 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-11
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEND--IPPHLLAVEDDEEDEMSTKFPAT 62
          M VSLEALAMAGIDSNEWAMDAEEW+ N  +MEND  IPPHLLA  D++E+ ++ K    
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLA--DEDEENIAAK--EL 60

Query: 63 RCSCCRKDDGVGGVSCSPTIMWHLRKIAEKR 90
            S  RKDDG+            LRK+ EKR
Sbjct: 61 CISGHRKDDGLVVFCAFRRSYAILRKMMEKR 87

[Close]

BLAST of CmaCh04G008160 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDIPPHLLAVEDDEEDEMST 54
          MSVS+EALAMAG D  EW MD EEWER ++E + PPHLLA E+++E+ +ST
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLST 51

[Close]

BLAST of CmaCh04G008160 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDIPPHLLAVEDDEEDEMST 54
          MSVS+EALAMAG D  EW MD EEWER ++E + PPHLLA E+++E+ +ST
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLST 51

[Close]

BLAST of CmaCh04G008160 vs. TrEMBL
Match: A0A0D2P3G6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDIPPHLLAVEDDEED----EMSTKFPAT 62
          M+VS+EALAMAG+D NEW +D E+WE ++  +  PPHLLA E++EE     E  T+   T
Sbjct: 1  MTVSIEALAMAGVDYNEWGLDIEKWEDDDDSHCPPPHLLAEENEEEPARVVEQGTRIIGT 60

Query: 63 RCSCCRKDDGVGG 72
               R +D  GG
Sbjct: 61 SSPTRRSEDDAGG 73

[Close]

BLAST of CmaCh04G008160 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 59/124 (47.58%), Postives = 73/124 (58.87%), Query Frame = 1


Query: 3   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDIPPHLLAVEDDEED------------- 62
           MSVSLEALAMAGIDSNEWAMDAEEWERNE++  +PPHLLA E+D+ED             
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 63  --EMSTKFPATRCSCCRKDDGVG----GVSCSPTIMWHLRKIAEKRDLNCLSSMEIVASA 108
              +   F   R   C+ D G G    G+ CS      L K+ EKR  N +SS+ I+   
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LSKVIEKRASNGMSSVRIIVRT 117

[Close]

BLAST of CmaCh04G008160 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 5.8e-11
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEND--IPPHLLAVEDDEEDEMSTKFPAT 62
          M VSLEALAMAGIDSNEWAMDAEEW+ N  +MEND  IPPHLLA  D++E+ ++ K    
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLA--DEDEENIAAK--EL 60

Query: 63 RCSCCRKDDGVGGVSCSPTIMWHLRKIAEKR 90
            S  RKDDG+            LRK+ EKR
Sbjct: 61 CISGHRKDDGLVVFCAFRRSYAILRKMMEKR 87

[Close]

BLAST of CmaCh04G008160 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDIPPHLLAVEDDEEDEMST 54
          MSVS+EALAMAG D  EW MD EEWER ++E + PPHLLA E+++E+ +ST
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLST 51

[Close]

BLAST of CmaCh04G008160 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDIPPHLLAVEDDEEDEMST 54
          MSVS+EALAMAG D  EW MD EEWER ++E + PPHLLA E+++E+ +ST
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLST 51

[Close]

BLAST of CmaCh04G008160 vs. NCBI nr
Match: gi|763753760|gb|KJB21148.1| (hypothetical protein B456_003G185100 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 3  MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDIPPHLLAVEDDEED----EMSTKFPAT 62
          M+VS+EALAMAG+D NEW +D E+WE ++  +  PPHLLA E++EE     E  T+   T
Sbjct: 1  MTVSIEALAMAGVDYNEWGLDIEKWEDDDDSHCPPPHLLAEENEEEPARVVEQGTRIIGT 60

Query: 63 RCSCCRKDDGVGG 72
               R +D  GG
Sbjct: 61 SSPTRRSEDDAGG 73

The following BLAST results are available for this feature:

BLAST of CmaCh04G008160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G008160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE7_CUCSA	1.1e-16	47.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1	[more]
A0A0A0KU90_CUCSA	4.0e-11	56.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1	[more]
V4SR82_9ROSI	1.9e-08	62.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1	[more]
V4SW68_9ROSI	1.9e-08	62.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1	[more]
A0A0D2P3G6_GOSRA	1.6e-07	46.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185100 PE=4 SV=1	[more]

BLAST of CmaCh04G008160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G008160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198046\|gb\|KGN53204.1\|	1.6e-16	47.58	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
gi\|700198047\|gb\|KGN53205.1\|	5.8e-11	56.04	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]
gi\|567871119\|ref\|XP_006428181.1\|	2.7e-08	62.75	hypothetical protein CICLE_v10027431mg [Citrus clementina]	[more]
gi\|567871177\|ref\|XP_006428210.1\|	2.7e-08	62.75	hypothetical protein CICLE_v10027432mg [Citrus clementina]	[more]
gi\|763753760\|gb\|KJB21148.1\|	2.3e-07	46.58	hypothetical protein B456_003G185100 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G008160.1	CmaCh04G008160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G008160	Cucsa.093760	Cucumber (Gy14) v1	cgycmaB0202
CmaCh04G008160	Cla010676	Watermelon (97103) v1	cmawmB689
CmaCh04G008160	Csa4G026810	Cucumber (Chinese Long) v2	cmacuB713
CmaCh04G008160	MELO3C017608	Melon (DHL92) v3.5.1	cmameB694
CmaCh04G008160	ClCG07G017350	Watermelon (Charleston Gray)	cmawcgB677
CmaCh04G008160	CSPI04G04480	Wild cucumber (PI 183967)	cmacpiB721
CmaCh04G008160	CmoCh16G007600	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G008160	CmoCh03G008510	Cucurbita moschata (Rifu)	cmacmoB727
CmaCh04G008160	Lsi07G001530	Bottle gourd (USVL1VR-Ls)	cmalsiB698
CmaCh04G008160	Cp4.1LG14g01100	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G008160	Cp4.1LG10g01140	Cucurbita pepo (Zucchini)	cmacpeB702
CmaCh04G008160	Cp4.1LG01g09170	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G008160	MELO3C017608.2	Melon (DHL92) v3.6.1	cmamedB782
CmaCh04G008160	CsaV3_UNG223590	Cucumber (Chinese Long) v3	cmacucB0859
CmaCh04G008160	CsaV3_4G004580	Cucumber (Chinese Long) v3	cmacucB0847
CmaCh04G008160	CsaV3_UNG120960	Cucumber (Chinese Long) v3	cmacucB0858
CmaCh04G008160	Cla97C07G144390	Watermelon (97103) v2	cmawmbB784
CmaCh04G008160	Bhi01G001957	Wax gourd	cmawgoB0846
CmaCh04G008160	CsGy4G004380	Cucumber (Gy14) v2	cgybcmaB547
CmaCh04G008160	Carg05815	Silver-seed gourd	carcmaB1414

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G008160	CmaCh16G007030	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G008160	Melon (DHL92) v3.6.1	cmamedB804
CmaCh04G008160	Silver-seed gourd	carcmaB1288
CmaCh04G008160	Cucumber (Chinese Long) v3	cmacucB0917
CmaCh04G008160	Cucumber (Chinese Long) v3	cmacucB0857
CmaCh04G008160	Watermelon (97103) v2	cmawmbB712
CmaCh04G008160	Wax gourd	cmawgoB0883
CmaCh04G008160	Cucurbita maxima (Rimu)	cmacmaB546
CmaCh04G008160	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G008160	Wild cucumber (PI 183967)	cmacpiB785
CmaCh04G008160	Melon (DHL92) v3.5.1	cmameB710
CmaCh04G008160	Watermelon (Charleston Gray)	cmawcgB639
CmaCh04G008160	Watermelon (97103) v1	cmawmB715
CmaCh04G008160	Cucurbita pepo (Zucchini)	cmacpeB741
CmaCh04G008160	Bottle gourd (USVL1VR-Ls)	cmalsiB639