CsaV3_UNG223590 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG223590
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationscaffold69 : 179061 .. 179314 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGAAAACAAATACTCATCAAATGGAGAACGACGACATAATTCCACCGCATTTATTAGCCGACGAAGACGAAGAAAATATAGCAGCCAAGGAATTATGCATTTCCGGTCACCGAAAAGATGACGGACTGGTGGTGTTTTGTGCTTTCCGGCGATCATATGCAATTTTAAGAAAAATGATGGAGAAGAGAGCTTCCTAA

mRNA sequence

GCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGAAAACAAATACTCATCAAATGGAGAACGACGACATAATTCCACCGCATTTATTAGCCGACGAAGACGAAGAAAATATAGCAGCCAAGGAATTATGCATTTCCGGTCACCGAAAAGATGACGGACTGGTGGTGTTTTGTGCTTTCCGGCGATCATATGCAATTTTAAGAAAAATGATGGAGAAGAGAGCTTCCTAA

Coding sequence (CDS)

GCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGAAAACAAATACTCATCAAATGGAGAACGACGACATAATTCCACCGCATTTATTAGCCGACGAAGACGAAGAAAATATAGCAGCCAAGGAATTATGCATTTCCGGTCACCGAAAAGATGACGGACTGGTGGTGTTTTGTGCTTTCCGGCGATCATATGCAATTTTAAGAAAAATGATGGAGAAGAGAGCTTCCTAA

Protein sequence

ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDGLVVFCAFRRSYAILRKMMEKRAS
Homology
[Close]
BLAST of CsaV3_UNG223590 vs. NCBI nr
Match: KGN53205.1 (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 3.4e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 60
          ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG
Sbjct: 7  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 66

Query: 61 LVVFCAFRRSYAILRKMMEKRAS 84
          LVVFCAFRRSYAILRKMMEKRAS
Sbjct: 67 LVVFCAFRRSYAILRKMMEKRAS 89

[Close]
BLAST of CsaV3_UNG223590 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-09
Identity = 46/85 (54.12%), Postives = 52/85 (61.18%), Query Frame = 0 

Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE----NIAAKELCISGHR 60
          ALAMAGIDSNEWAMDAEEW+ N  +ME D  IPPHLLADED+E    +        S  R
Sbjct: 7  ALAMAGIDSNEWAMDAEEWERN--EMEKD--IPPHLLADEDDEEDEMSTKFPATRCSCCR 66

Query: 61 KDDGLVVFCAFRRSYAILRKMMEKR 82
          KDDG+            LRK+ EKR
Sbjct: 67 KDDGVGGVSCSPTIMWHLRKITEKR 87

[Close]
BLAST of CsaV3_UNG223590 vs. NCBI nr
Match: KGN53204.1 (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 44
          ALAMAGIDSNEWAMDAEEW+ N       D++PPHLLADE+++
Sbjct: 7  ALAMAGIDSNEWAMDAEEWERN-----EIDVVPPHLLADEEDD 44

[Close]
BLAST of CsaV3_UNG223590 vs. TAIR10
Match: AT2G22320.1 (unknown protein)

HSP 1 Score: 40.8 bits (94), Expect = 4.8e-04
Identity = 18/40 (45.00%), Postives = 25/40 (62.50%), Query Frame = 0 

Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE 41
          ALAMAG+D  EW +  EEW+        + ++P HLLAD+
Sbjct: 3  ALAMAGVDYQEWGLSIEEWEL------QESVVPLHLLADD 36

[Close]
BLAST of CsaV3_UNG223590 vs. TrEMBL
Match: tr|A0A0A0KU90|A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 60
          ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG
Sbjct: 7  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 66

Query: 61 LVVFCAFRRSYAILRKMMEKRAS 84
          LVVFCAFRRSYAILRKMMEKRAS
Sbjct: 67 LVVFCAFRRSYAILRKMMEKRAS 89

[Close]
BLAST of CsaV3_UNG223590 vs. TrEMBL
Match: tr|A0A0A0KWE7|A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.6e-07
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 44
          ALAMAGIDSNEWAMDAEEW+ N       D++PPHLLADE+++
Sbjct: 7  ALAMAGIDSNEWAMDAEEWERN-----EIDVVPPHLLADEEDD 44

The following BLAST results are available for this feature:
BLAST of CsaV3_UNG223590 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53205.13.4e-40100.00hypothetical protein Csa_4G026820 [Cucumis sativus][more]
XP_022943015.12.4e-0954.12uncharacterized protein LOC111447880 [Cucurbita moschata][more]
KGN53204.18.5e-0767.44hypothetical protein Csa_4G026810 [Cucumis sativus][more]
BLAST of CsaV3_UNG223590 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22320.14.8e-0445.00unknown protein[more]
BLAST of CsaV3_UNG223590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG223590 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KU90|A0A0A0KU90_CUCSA2.3e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
tr|A0A0A0KWE7|A0A0A0KWE7_CUCSA5.6e-0767.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG223590.1CsaV3_UNG223590.1mRNA