MELO3C017608 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017608
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Galactose oxidase/kelch repeat superfamily protein
Location	chr7 : 23456835 .. 23457224 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGGTATGGACGCTCAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGAATATGTAACGAGTACTATTAGTAACTATTGCTTTCGCGTTGATGGGTCCTTCGGGGGATGGCGTCGGAGAGATTGGAAAGCTGATGGTGCCCTTCGCATTTTGGGGATTTTTTATAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAATTCAGTGAGAATAATAGTTAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAG

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGGTATGGACGCTCAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGAATATGTAACGAGTACTATTAGTAACTATTGCTTTCGCGTTGATGGGTCCTTCGGGGGATGGCGTCGGAGAGATTGGAAAGCTGATGGTGCCCTTCGCATTTTGGGGATTTTTTATAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAATTCAGTGAGAATAATAGTTAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAG

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGGTATGGACGCTCAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGAATATGTAACGAGTACTATTAGTAACTATTGCTTTCGCGTTGATGGGTCCTTCGGGGGATGGCGTCGGAGAGATTGGAAAGCTGATGGTGCCCTTCGCATTTTGGGGATTTTTTATAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAATTCAGTGAGAATAATAGTTAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAG

Protein sequence

MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTMKIISAQRSKM*

Homology

[Close]

BLAST of MELO3C017608 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.3e-53
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60
           MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60

Query: 61  FRVDGSFGGWRRRDWKADG--ALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 120
           F VDGSF GWR RD KADG     ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120

Query: 121 MTMKIISAQRSKM 130
           MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 133

[Close]

BLAST of MELO3C017608 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-09
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNY 58
          MSVS+EALAMAG D  EWGMD +EWER +I++  PPHLLADEE+ E  EY+ ST S++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKE--EYL-STASHF 55

[Close]

BLAST of MELO3C017608 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-09
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNY 58
          MSVS+EALAMAG D  EWGMD +EWER ++++  PPHLLADEE+ E  EY+ ST S++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKE--EYL-STASHF 55

[Close]

BLAST of MELO3C017608 vs. TrEMBL
Match: V4SR86_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027542mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-09
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTST 54
          M VSLEALAM G D  EWGMDA+EWER++ D+ PPHLLA+EE++E+   + ST
Sbjct: 1  MLVSLEALAMTGADYVEWGMDAEEWERDD-DLTPPHLLAEEEEEEEHSALPST 52

[Close]

BLAST of MELO3C017608 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERN-----EIDVVPPHLLADEEDD 45
          M VSLEALAMAGIDSNEW MDA+EW+ N       D++PPHLLADE+++
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 49

[Close]

BLAST of MELO3C017608 vs. TAIR10
Match: AT2G22320.1 (AT2G22320.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-07
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1


Query: 5  LEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE 49
          +EALAMAG+D  EWG+  +EWE  E  VVP HLLAD+  +E+ E
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQE-SVVPLHLLADDFKEEEQE 43

[Close]

BLAST of MELO3C017608 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 4.8e-53
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 1


Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60
           MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60

Query: 61  FRVDGSFGGWRRRDWKADG--ALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 120
           F VDGSF GWR RD KADG     ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120

Query: 121 MTMKIISAQRSKM 130
           MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 133

[Close]

BLAST of MELO3C017608 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 69.7 bits (169), Expect = 4.2e-09
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNY 58
          MSVS+EALAMAG D  EWGMD +EWER +I++  PPHLLADEE+ E  EY+ ST S++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKE--EYL-STASHF 55

[Close]

BLAST of MELO3C017608 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNY 58
          MSVS+EALAMAG D  EWGMD +EWER ++++  PPHLLADEE+ E  EY+ ST S++
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKE--EYL-STASHF 55

[Close]

BLAST of MELO3C017608 vs. NCBI nr
Match: gi|567871187|ref|XP_006428215.1| (hypothetical protein CICLE_v10027542mg [Citrus clementina])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTST 54
          M VSLEALAM G D  EWGMDA+EWER++ D+ PPHLLA+EE++E+   + ST
Sbjct: 1  MLVSLEALAMTGADYVEWGMDAEEWERDD-DLTPPHLLAEEEEEEEHSALPST 52

[Close]

BLAST of MELO3C017608 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 7.2e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERN-----EIDVVPPHLLADEEDD 45
          M VSLEALAMAGIDSNEW MDA+EW+ N       D++PPHLLADE+++
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 49

The following BLAST results are available for this feature:

BLAST of MELO3C017608 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE7_CUCSA	3.3e-53	86.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1	[more]
V4SR82_9ROSI	3.0e-09	63.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1	[more]
V4SW68_9ROSI	3.9e-09	62.07	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1	[more]
V4SR86_9ROSI	3.9e-09	62.26	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027542mg PE=4 SV=1	[more]
A0A0A0KU90_CUCSA	5.0e-09	65.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of MELO3C017608 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22320.1	1.5e-07	56.82	unknown protein	[more]

BLAST of MELO3C017608 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198046\|gb\|KGN53204.1\|	4.8e-53	86.47	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
gi\|567871177\|ref\|XP_006428210.1\|	4.2e-09	63.79	hypothetical protein CICLE_v10027432mg [Citrus clementina]	[more]
gi\|567871119\|ref\|XP_006428181.1\|	5.5e-09	62.07	hypothetical protein CICLE_v10027431mg [Citrus clementina]	[more]
gi\|567871187\|ref\|XP_006428215.1\|	5.5e-09	62.26	hypothetical protein CICLE_v10027542mg [Citrus clementina]	[more]
gi\|700198047\|gb\|KGN53205.1\|	7.2e-09	65.31	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017608T1	MELO3C017608T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C017608	Csa4G026810	Cucumber (Chinese Long) v2	cumeB312
MELO3C017608	Cla010676	Watermelon (97103) v1	mewmB506
MELO3C017608	ClCG07G017350	Watermelon (Charleston Gray)	mewcgB493
MELO3C017608	Cla97C07G144390	Watermelon (97103) v2	mewmbB498
MELO3C017608	Bhi01G001957	Wax gourd	mewgoB568
MELO3C017608	CSPI04G04480	Wild cucumber (PI 183967)	cpimeB310
MELO3C017608	Cucsa.093760	Cucumber (Gy14) v1	cgymeB111
MELO3C017608	CmaCh04G008160	Cucurbita maxima (Rimu)	cmameB694
MELO3C017608	CmaCh16G007030	Cucurbita maxima (Rimu)	cmameB301
MELO3C017608	CmoCh16G007600	Cucurbita moschata (Rifu)	cmomeB294
MELO3C017608	Lsi07G001530	Bottle gourd (USVL1VR-Ls)	lsimeB454
MELO3C017608	Cp4.1LG14g01100	Cucurbita pepo (Zucchini)	cpemeB196
MELO3C017608	Cp4.1LG01g09170	Cucurbita pepo (Zucchini)	cpemeB416
MELO3C017608	CsGy4G004380	Cucumber (Gy14) v2	cgybmeB269
MELO3C017608	Carg05815	Silver-seed gourd	carmeB0992
MELO3C017608	CsaV3_UNG120960	Cucumber (Chinese Long) v3	cucmeB347
MELO3C017608	CsaV3_UNG223590	Cucumber (Chinese Long) v3	cucmeB348
MELO3C017608	CsaV3_4G004580	Cucumber (Chinese Long) v3	cucmeB315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017608	Watermelon (97103) v2	mewmbB457
MELO3C017608	Cucurbita maxima (Rimu)	cmameB304
MELO3C017608	Cucurbita maxima (Rimu)	cmameB702
MELO3C017608	Cucurbita moschata (Rifu)	cmomeB299
MELO3C017608	Cucurbita moschata (Rifu)	cmomeB686
MELO3C017608	Cucurbita moschata (Rifu)	cmomeB694
MELO3C017608	Cucurbita pepo (Zucchini)	cpemeB202
MELO3C017608	Cucurbita pepo (Zucchini)	cpemeB425
MELO3C017608	Cucurbita pepo (Zucchini)	cpemeB432
MELO3C017608	Silver-seed gourd	carmeB0384
MELO3C017608	Silver-seed gourd	carmeB0862
MELO3C017608	Silver-seed gourd	carmeB0924
MELO3C017608	Cucumber (Chinese Long) v3	cucmeB346