CmaCh16G007030 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G007030
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 3663000 .. 3663404 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATCGAGAACGACGTTCCACCGCATTTATTAGCCGATGAAGACGACGACGACGACGATAACGATAACGTAACGAGTAGTGTCAGCAATCATAGCTTCCTGGTCGCTGGATTCTTCGATAGCTTGCGTCGGAAAGATGGCGGAGCCGACGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTAAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTAGGGTTTCTACTGGTGAAGATCATCAAGATCATTAGTGCACACACATCCAATATGATTATTCCTTGA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATCGAGAACGACGTTCCACCGCATTTATTAGCCGATGAAGACGACGACGACGACGATAACGATAACGTAACGAGTAGTGTCAGCAATCATAGCTTCCTGGTCGCTGGATTCTTCGATAGCTTGCGTCGGAAAGATGGCGGAGCCGACGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTAAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTAGGGTTTCTACTGGTGAAGATCATCAAGATCATTAGTGCACACACATCCAATATGATTATTCCTTGA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATCGAGAACGACGTTCCACCGCATTTATTAGCCGATGAAGACGACGACGACGACGATAACGATAACGTAACGAGTAGTGTCAGCAATCATAGCTTCCTGGTCGCTGGATTCTTCGATAGCTTGCGTCGGAAAGATGGCGGAGCCGACGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTAAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTAGGGTTTCTACTGGTGAAGATCATCAAGATCATTAGTGCACACACATCCAATATGATTATTCCTTGA

Protein sequence

MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDDNDNVTSSVSNHSFLVAGFFDSLRRKDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKIIKIISAHTSNMIIP
Homology
[Close]
BLAST of CmaCh16G007030 vs. TrEMBL
Match: A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.5e-35
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 1 

Query: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDDNDNV-TSSVSNH 60
           MSVSLEALAMAGI SNEWAMDAEEWERNEI+  VPPHLLADE+DD+D +++V TS++SN+
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  SFLVAGFFDSLRRKDGGAD--DIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLL 120
            F V G F+  R +D  AD    H   GI CSLSK +EKRASNGMSSVRIIVRTILGFL+
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VKIIKIISAHTSNM 132
           V  +KIISA  S M
Sbjct: 121 VMTMKIISAQRSKM 133

[Close]
BLAST of CmaCh16G007030 vs. TrEMBL
Match: A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.6e-11
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 1 

Query: 1   MSVSLEALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDDDDNDNVTSSV 60
           M VSLEALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADED++         ++
Sbjct: 1   MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE---------NI 60

Query: 61  SNHSFLVAGFFDSLRRKDGGADDIHCFWGILCSLSKSLEKRAS 100
           +     ++G      RKD G      F      L K +EKRAS
Sbjct: 61  AAKELCISG-----HRKDDGLVVFCAFRRSYAILRKMMEKRAS 89

[Close]
BLAST of CmaCh16G007030 vs. TrEMBL
Match: V4SR82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDD----------DDND 53
          MSVS+EALAMAG    EW MD EEWER +IE + PPHLLADE++ +          +DND
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLSTASHFSEDND 60

[Close]
BLAST of CmaCh16G007030 vs. TrEMBL
Match: V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDD----------DDND 53
          MSVS+EALAMAG    EW MD EEWER ++E + PPHLLADE++ +          +DND
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLSTASHFSEDND 60

[Close]
BLAST of CmaCh16G007030 vs. TrEMBL
Match: G7J3Q9_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g087110 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-06
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDD 46
          M VSLEALAMAG +S E+ +D EEWERN++E   PPHLLA E+DD
Sbjct: 1  MVVSLEALAMAGTSSVEYGIDIEEWERNDLEQYPPPHLLAQEEDD 45

[Close]
BLAST of CmaCh16G007030 vs. NCBI nr
Match: gi|700198046|gb|KGN53204.1| (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 3.6e-35
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 1 

Query: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDDNDNV-TSSVSNH 60
           MSVSLEALAMAGI SNEWAMDAEEWERNEI+  VPPHLLADE+DD+D +++V TS++SN+
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  SFLVAGFFDSLRRKDGGAD--DIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLL 120
            F V G F+  R +D  AD    H   GI CSLSK +EKRASNGMSSVRIIVRTILGFL+
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VKIIKIISAHTSNM 132
           V  +KIISA  S M
Sbjct: 121 VMTMKIISAQRSKM 133

[Close]
BLAST of CmaCh16G007030 vs. NCBI nr
Match: gi|700198047|gb|KGN53205.1| (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 8.0e-11
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 1 

Query: 1   MSVSLEALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDDDDNDNVTSSV 60
           M VSLEALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADED++         ++
Sbjct: 1   MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE---------NI 60

Query: 61  SNHSFLVAGFFDSLRRKDGGADDIHCFWGILCSLSKSLEKRAS 100
           +     ++G      RKD G      F      L K +EKRAS
Sbjct: 61  AAKELCISG-----HRKDDGLVVFCAFRRSYAILRKMMEKRAS 89

[Close]
BLAST of CmaCh16G007030 vs. NCBI nr
Match: gi|567871177|ref|XP_006428210.1| (hypothetical protein CICLE_v10027432mg [Citrus clementina])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDD----------DDND 53
          MSVS+EALAMAG    EW MD EEWER +IE + PPHLLADE++ +          +DND
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDIELEPPPHLLADEEEKEEYLSTASHFSEDND 60

[Close]
BLAST of CmaCh16G007030 vs. NCBI nr
Match: gi|567871119|ref|XP_006428181.1| (hypothetical protein CICLE_v10027431mg [Citrus clementina])

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDD----------DDND 53
          MSVS+EALAMAG    EW MD EEWER ++E + PPHLLADE++ +          +DND
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEEYLSTASHFSEDND 60

[Close]
BLAST of CmaCh16G007030 vs. NCBI nr
Match: gi|357463323|ref|XP_003601943.1| (hypothetical protein MTR_3g087110 [Medicago truncatula])

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 

Query: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDD 46
          M VSLEALAMAG +S E+ +D EEWERN++E   PPHLLA E+DD
Sbjct: 1  MVVSLEALAMAGTSSVEYGIDIEEWERNDLEQYPPPHLLAQEEDD 45

The following BLAST results are available for this feature:
BLAST of CmaCh16G007030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G007030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWE7_CUCSA2.5e-3568.66Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026810 PE=4 SV=1[more]
A0A0A0KU90_CUCSA5.6e-1147.57Uncharacterized protein OS=Cucumis sativus GN=Csa_4G026820 PE=4 SV=1[more]
V4SR82_9ROSI1.4e-0654.84Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027432mg PE=4 SV=1[more]
V4SW68_9ROSI1.9e-0653.23Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027431mg PE=4 SV=1[more]
G7J3Q9_MEDTR3.2e-0666.67Uncharacterized protein OS=Medicago truncatula GN=MTR_3g087110 PE=4 SV=1[more]
BLAST of CmaCh16G007030 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh16G007030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198046|gb|KGN53204.1|3.6e-3568.66hypothetical protein Csa_4G026810 [Cucumis sativus][more]
gi|700198047|gb|KGN53205.1|8.0e-1147.57hypothetical protein Csa_4G026820 [Cucumis sativus][more]
gi|567871177|ref|XP_006428210.1|2.0e-0654.84hypothetical protein CICLE_v10027432mg [Citrus clementina][more]
gi|567871119|ref|XP_006428181.1|2.7e-0653.23hypothetical protein CICLE_v10027431mg [Citrus clementina][more]
gi|357463323|ref|XP_003601943.1|4.5e-0666.67hypothetical protein MTR_3g087110 [Medicago truncatula][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G007030.1CmaCh16G007030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G007030Cucsa.093760Cucumber (Gy14) v1cgycmaB0195
CmaCh16G007030Cla010676Watermelon (97103) v1cmawmB312
CmaCh16G007030Csa4G026810Cucumber (Chinese Long) v2cmacuB337
CmaCh16G007030MELO3C017608Melon (DHL92) v3.5.1cmameB301
CmaCh16G007030ClCG07G017350Watermelon (Charleston Gray)cmawcgB304
CmaCh16G007030CSPI04G04480Wild cucumber (PI 183967)cmacpiB342
CmaCh16G007030CmoCh16G007600Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G007030Lsi07G001530Bottle gourd (USVL1VR-Ls)cmalsiB326
CmaCh16G007030Cp4.1LG01g09170Cucurbita pepo (Zucchini)cmacpeB350
CmaCh16G007030Cp4.1LG14g01100Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G007030MELO3C017608.2Melon (DHL92) v3.6.1cmamedB350
CmaCh16G007030CsaV3_UNG223590Cucumber (Chinese Long) v3cmacucB0401
CmaCh16G007030CsaV3_4G004580Cucumber (Chinese Long) v3cmacucB0393
CmaCh16G007030CsaV3_UNG120960Cucumber (Chinese Long) v3cmacucB0400
CmaCh16G007030Cla97C07G144390Watermelon (97103) v2cmawmbB354
CmaCh16G007030Bhi01G001957Wax gourdcmawgoB0432
CmaCh16G007030CsGy4G004380Cucumber (Gy14) v2cgybcmaB498
CmaCh16G007030Carg05815Silver-seed gourdcarcmaB1409
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh16G007030CmaCh04G008160Cucurbita maxima (Rimu)cmacmaB350
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G007030Silver-seed gourdcarcmaB1286
CmaCh16G007030Cucumber (Chinese Long) v3cmacucB0399
CmaCh16G007030Watermelon (97103) v2cmawmbB331
CmaCh16G007030Watermelon (97103) v2cmawmbB336
CmaCh16G007030Cucurbita moschata (Rifu)cmacmoB337