Bhi01M001957 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M001957
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Tetratricopeptide-like helical
Location	chr1 : 62198038 .. 62198427 (-)
Sequence length	390

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGATGCACAAGAATGGGAAAGAAATGAAACTGAGACCGACGTTCCACCGCATTTATTAGCCGACGAAGATGATAACAGTGACGACAAAAACATAACCAGTACTAACTATAGCTTTTCGGTTGCCGGATTCTCCGGGAGCTGGCACCGGAAAGATGGCAAAGCTGATGATGGTATCCATTACATTTGGGGGATTTTTTGTAGTTTATGCAAAGCCATAGAGAAAAGGGCTTCTAATGGAATGAGCTCAGTGAGAATAATGGTGAATACTATTTTAGGGTTTTTGATGGTGCTGACCATGAAGATAATTAGTGCACAAAGATCCAAGTTGTAA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGATGCACAAGAATGGGAAAGAAATGAAACTGAGACCGACGTTCCACCGCATTTATTAGCCGACGAAGATGATAACAGTGACGACAAAAACATAACCAGTACTAACTATAGCTTTTCGGTTGCCGGATTCTCCGGGAGCTGGCACCGGAAAGATGGCAAAGCTGATGATGGTATCCATTACATTTGGGGGATTTTTTGTAGTTTATGCAAAGCCATAGAGAAAAGGGCTTCTAATGGAATGAGCTCAGTGAGAATAATGGTGAATACTATTTTAGGGTTTTTGATGGTGCTGACCATGAAGATAATTAGTGCACAAAGATCCAAGTTGTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGATGCACAAGAATGGGAAAGAAATGAAACTGAGACCGACGTTCCACCGCATTTATTAGCCGACGAAGATGATAACAGTGACGACAAAAACATAACCAGTACTAACTATAGCTTTTCGGTTGCCGGATTCTCCGGGAGCTGGCACCGGAAAGATGGCAAAGCTGATGATGGTATCCATTACATTTGGGGGATTTTTTGTAGTTTATGCAAAGCCATAGAGAAAAGGGCTTCTAATGGAATGAGCTCAGTGAGAATAATGGTGAATACTATTTTAGGGTTTTTGATGGTGCTGACCATGAAGATAATTAGTGCACAAAGATCCAAGTTGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSDDKNITSTNYSFSVAGFSGSWHRKDGKADDGIHYIWGIFCSLCKAIEKRASNGMSSVRIMVNTILGFLMVLTMKIISAQRSKL

Homology

[Close]

BLAST of Bhi01M001957 vs. TAIR10
Match: AT2G22320.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 8.7e-05
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 5  LEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADE 43
          +EALAMAG+D  EW +  +EWE  E+   VP HLLAD+
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQESV--VPLHLLADD 36

[Close]

BLAST of Bhi01M001957 vs. TrEMBL
Match: tr|A0A0A0KWE7|A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.5e-38
Identity = 95/134 (70.90%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD-DKNITS---TNY 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE +  VPPHLLADE+D+ D D+++T+   +NY
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  SFSVAGFSGSWHRKDGKADDGI-HYIWGIFCSLCKAIEKRASNGMSSVRIMVNTILGFLM 120
            F V G    W  +D KAD G  H I GIFCSL K IEKRASNGMSSVRI+V TILGFLM
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VLTMKIISAQRSKL 130
           V+TMKIISAQRSK+
Sbjct: 121 VMTMKIISAQRSKM 133

[Close]

BLAST of Bhi01M001957 vs. TrEMBL
Match: tr|A0A0A0KU90|A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 52/108 (48.15%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERN----ETETDVPPHLLADEDDNSDDKNITSTNY 60
          M VSLEALAMAGIDSNEWAMDA+EW+ N    E +  +PPHLLADE    D++NI +   
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE----DEENIAAKEL 60

Query: 61 SFSVAGFSGSWHRKDGKADDGIHYIWGIFCS-------LCKAIEKRAS 98
                   S HRK    DDG+     +FC+       L K +EKRAS
Sbjct: 61 CI-------SGHRK----DDGL----VVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of Bhi01M001957 vs. TrEMBL
Match: tr|A0A1Q3CWR7|A0A1Q3CWR7_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-08
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSDDKNITSTNYSF 59
          MSVSLEALAMAG+D NEW +D +EWER + ET  PPHLLA+E++      I   +YSF
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEEE------IVKRDYSF 52

[Close]

BLAST of Bhi01M001957 vs. TrEMBL
Match: tr|V4SW68|V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD 48
          MSVS+EALAMAG D  EW MD +EWER + E + PPHLLADE++  +
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

[Close]

BLAST of Bhi01M001957 vs. TrEMBL
Match: tr|A0A2H5Q4J9|A0A2H5Q4J9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_195420 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD 48
          MSVS+EALAMAG D  EW MD +EWER + E + PPHLLADE++  +
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

[Close]

BLAST of Bhi01M001957 vs. NCBI nr
Match: KGN53204.1 (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 95/134 (70.90%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD-DKNITS---TNY 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE +  VPPHLLADE+D+ D D+++T+   +NY
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  SFSVAGFSGSWHRKDGKADDGI-HYIWGIFCSLCKAIEKRASNGMSSVRIMVNTILGFLM 120
            F V G    W  +D KAD G  H I GIFCSL K IEKRASNGMSSVRI+V TILGFLM
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VLTMKIISAQRSKL 130
           V+TMKIISAQRSK+
Sbjct: 121 VMTMKIISAQRSKM 133

[Close]

BLAST of Bhi01M001957 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSDDKNITSTNYSFSV 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE E D+PPHLLADEDD  D+    ST +  + 
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDE---MSTKFPATR 60

Query: 61  AGFSGSWHRKDGKADDGIHYIWGIFCS------LCKAIEKRASNGMSSVRIMVNTILGFL 120
                       + DDG   + G+ CS      L K  EKR  N +SS+ I+ + ++GFL
Sbjct: 61  CSCC--------RKDDG---VGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFL 120

Query: 121 MVLTMKIISAQRSK 129
           M +T+KII+++RSK
Sbjct: 121 MFMTIKIIASKRSK 120

[Close]

BLAST of Bhi01M001957 vs. NCBI nr
Match: KGN53205.1 (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 4.3e-10
Identity = 52/108 (48.15%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERN----ETETDVPPHLLADEDDNSDDKNITSTNY 60
          M VSLEALAMAGIDSNEWAMDA+EW+ N    E +  +PPHLLADE    D++NI +   
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE----DEENIAAKEL 60

Query: 61 SFSVAGFSGSWHRKDGKADDGIHYIWGIFCS-------LCKAIEKRAS 98
                   S HRK    DDG+     +FC+       L K +EKRAS
Sbjct: 61 CI-------SGHRK----DDGL----VVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of Bhi01M001957 vs. NCBI nr
Match: GAV84674.1 (hypothetical protein CFOL_v3_28116 [Cephalotus follicularis])

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-08
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSDDKNITSTNYSF 59
          MSVSLEALAMAG+D NEW +D +EWER + ET  PPHLLA+E++      I   +YSF
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEEE------IVKRDYSF 52

[Close]

BLAST of Bhi01M001957 vs. NCBI nr
Match: ESR41421.1 (hypothetical protein CICLE_v10027431mg [Citrus clementina] >GAY59570.1 hypothetical protein CUMW_195420 [Citrus unshiu])

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETETDVPPHLLADEDDNSD 48
          MSVS+EALAMAG D  EW MD +EWER + E + PPHLLADE++  +
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELEPPPHLLADEEEKEE 47

The following BLAST results are available for this feature:

BLAST of Bhi01M001957 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22320.1	8.7e-05	55.26	unknown protein	[more]

BLAST of Bhi01M001957 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01M001957 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWE7\|A0A0A0KWE7_CUCSA	1.5e-38	70.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
tr\|A0A0A0KU90\|A0A0A0KU90_CUCSA	2.9e-10	48.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]
tr\|A0A1Q3CWR7\|A0A1Q3CWR7_CEPFO	2.1e-08	58.62	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4...	[more]
tr\|V4SW68\|V4SW68_9ROSI	3.0e-07	61.70	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027431mg PE=4 ...	[more]
tr\|A0A2H5Q4J9\|A0A2H5Q4J9_CITUN	3.0e-07	61.70	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_195420 PE=4 SV=1	[more]

BLAST of Bhi01M001957 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53204.1	2.2e-38	70.90	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
XP_022943015.1	1.7e-22	51.49	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]
KGN53205.1	4.3e-10	48.15	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]
GAV84674.1	3.1e-08	58.62	hypothetical protein CFOL_v3_28116 [Cephalotus follicularis]	[more]
ESR41421.1	4.5e-07	61.70	hypothetical protein CICLE_v10027431mg [Citrus clementina] >GAY59570.1 hypotheti...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G001957	Bhi01G001957	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M001957	cds.Bhi01M001957	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001957.exon1	Bhi01M001957.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M001957	Bhi01M001957-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..49