Lsi05G013270 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G013270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 21059460 .. 21059708 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGAGATATTCTTCCCTTCGAATTTGGCGGCGGCGGTGGCGACGGCGAGAGCGGCGACGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGTTTACACAGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCTGAGAAAGAGAAGCAAAAGAAGGCTAGAATCATTCAATTGCTTTGAGTTTTTGAAAATCGTGTGGTGCTTCAAATTCTAA

mRNA sequence

ATGGCCAGAGATATTCTTCCCTTCGAATTTGGCGGCGGCGGTGGCGACGGCGAGAGCGGCGACGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGTTTACACAGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCTGAGAAAGAGAAGCAAAAGAAGGCTAGAATCATTCAATTGCTTTGAGTTTTTGAAAATCGTGTGGTGCTTCAAATTCTAA

Coding sequence (CDS)

ATGGCCAGAGATATTCTTCCCTTCGAATTTGGCGGCGGCGGTGGCGACGGCGAGAGCGGCGACGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGTTTACACAGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCTGAGAAAGAGAAGCAAAAGAAGGCTAGAATCATTCAATTGCTTTGAGTTTTTGAAAATCGTGTGGTGCTTCAAATTCTAA

Protein sequence

MARDILPFEFGGGGGDGESGDGDIFFGKDDMKEYAWDGVYTEETVRFLETESAMKALRKRSKRRLESFNCFEFLKIVWCFKF
Homology
[Close]
BLAST of Lsi05G013270 vs. TrEMBL
Match: A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-32
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 1 

Query: 1  MARDILPFEFGGGGGDGESGDGDIFFGKDDMKEYAWDGVYTEETVRFLETESAMKALRKR 60
          MARDILPFEFGGGG       GDIFFGKDDMKEYAWDGVYTEETVRF+ETESA KALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SKRRLESFNCFEFLKIVWCFKF 83
          S+R+LE FNCFEFLKIVWCFKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

[Close]
BLAST of Lsi05G013270 vs. NCBI nr
Match: gi|700202130|gb|KGN57263.1| (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-32
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 1 

Query: 1  MARDILPFEFGGGGGDGESGDGDIFFGKDDMKEYAWDGVYTEETVRFLETESAMKALRKR 60
          MARDILPFEFGGGG       GDIFFGKDDMKEYAWDGVYTEETVRF+ETESA KALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SKRRLESFNCFEFLKIVWCFKF 83
          S+R+LE FNCFEFLKIVWCFKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:
BLAST of Lsi05G013270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G013270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L658_CUCSA1.6e-3285.37Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1[more]
BLAST of Lsi05G013270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G013270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202130|gb|KGN57263.1|2.3e-3285.37hypothetical protein Csa_3G175640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G013270.1Lsi05G013270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G013270Csa3G175640Cucumber (Chinese Long) v2culsiB210
Lsi05G013270CSPI03G15900Wild cucumber (PI 183967)cpilsiB208
Lsi05G013270Cucsa.251690Cucumber (Gy14) v1cgylsiB416
Lsi05G013270CmoCh16G002080Cucurbita moschata (Rifu)cmolsiB300
Lsi05G013270CmoCh04G003570Cucurbita moschata (Rifu)cmolsiB681
Lsi05G013270Cla006273Watermelon (97103) v1lsiwmB366
Lsi05G013270MELO3C006808Melon (DHL92) v3.5.1lsimeB379
Lsi05G013270MELO3C006808.2Melon (DHL92) v3.6.1lsimedB397
Lsi05G013270Cla97C05G089100Watermelon (97103) v2lsiwmbB334
Lsi05G013270Cp4.1LG01g03790Cucurbita pepo (Zucchini)cpelsiB367
Lsi05G013270Carg08016Silver-seed gourdcarlsiB345
Lsi05G013270Carg16741Silver-seed gourdcarlsiB791
Lsi05G013270CsaV3_3G016110Cucumber (Chinese Long) v3cuclsiB229
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G013270Cucumber (Chinese Long) v3cuclsiB245
Lsi05G013270Cucumber (Chinese Long) v3cuclsiB405
Lsi05G013270Wax gourdlsiwgoB444
Lsi05G013270Cucurbita maxima (Rimu)cmalsiB312
Lsi05G013270Cucurbita maxima (Rimu)cmalsiB688
Lsi05G013270Cucurbita pepo (Zucchini)cpelsiB172
Lsi05G013270Wild cucumber (PI 183967)cpilsiB384
Lsi05G013270Cucumber (Chinese Long) v2culsiB380
Lsi05G013270Watermelon (Charleston Gray)lsiwcgB328
Lsi05G013270Watermelon (Charleston Gray)lsiwcgB336
Lsi05G013270Cucumber (Gy14) v2cgyblsiB197
Lsi05G013270Cucumber (Gy14) v2cgyblsiB346
Lsi05G013270Melon (DHL92) v3.6.1lsimedB356