MELO3C006808.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006808.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 6249169 .. 6249860 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACCTCCAAAGGTTCCATTTCTCCAAAAGGCTACTCCCCGATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGGGGGCGAGAGCGAGCGCGGCGGAGACGTTTTCTTCGGTAAGGATGATATGAAAGAGTACGCATGGGATGGAGTTTACACCGAAGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTGAGAAAGAGAAGCAGAAGAAAGCTAGAACCATTCAATTGCTTTGAGTTCTTGAGAATCGTTTGCTCTTTCAAATTCTAACTCTCTTCATTCTCTTTTAATTTTTCCTCTTTGTAGATCGAATGAAATGTTCATATCCATTTAATGATCTTCGATCCTTTTTCTTGTGCTTCGCTCGATCTCGATGCTCATTCATCGGAATTTTCTGAGCCAGGATTTTGTAATTAGAAATTGTGATTTCTGTATATACTTCTATTGTTTAGAAAGCTTCAGAATGTGTATAAAATCTCTTTCTCTTTTGCAATTTCAATTTCAATTTGGTGTGAGGAATTTTCTTGGATTTCAAACAGCACCGGGTCAACCGAGTGACGCAGATTTTGCTTGAATCGATGAACTCGAATTCTTTTGAAAGTAAATTACATTTTTTTTCATGCGTAAACGTGACTTCGTTTACGCAAACTAATGTCTACATTTAGTGAAATT

mRNA sequence

AGACCTCCAAAGGTTCCATTTCTCCAAAAGGCTACTCCCCGATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGGGGGCGAGAGCGAGCGCGGCGGAGACGTTTTCTTCGGTAAGGATGATATGAAAGAGTACGCATGGGATGGAGTTTACACCGAAGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTGAGAAAGAGAAGCAGAAGAAAGCTAGAACCATTCAATTGCTTTGAGTTCTTGAGAATCGTTTGCTCTTTCAAATTCTAACTCTCTTCATTCTCTTTTAATTTTTCCTCTTTGTAGATCGAATGAAATGTTCATATCCATTTAATGATCTTCGATCCTTTTTCTTGTGCTTCGCTCGATCTCGATGCTCATTCATCGGAATTTTCTGAGCCAGGATTTTGTAATTAGAAATTGTGATTTCTGTATATACTTCTATTGTTTAGAAAGCTTCAGAATGTGTATAAAATCTCTTTCTCTTTTGCAATTTCAATTTCAATTTGGTGTGAGGAATTTTCTTGGATTTCAAACAGCACCGGGTCAACCGAGTGACGCAGATTTTGCTTGAATCGATGAACTCGAATTCTTTTGAAAGTAAATTACATTTTTTTTCATGCGTAAACGTGACTTCGTTTACGCAAACTAATGTCTACATTTAGTGAAATT

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGGGGGCGAGAGCGAGCGCGGCGGAGACGTTTTCTTCGGTAAGGATGATATGAAAGAGTACGCATGGGATGGAGTTTACACCGAAGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTGAGAAAGAGAAGCAGAAGAAAGCTAGAACCATTCAATTGCTTTGAGTTCTTGAGAATCGTTTGCTCTTTCAAATTCTAA

Protein sequence

MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKRSRRKLEPFNCFEFLRIVCSFKF

Homology

[Close]

BLAST of MELO3C006808.2 vs. NCBI nr
Match: KGN57263.1 (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 70/82 (85.37%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 1  MARDILPFEFGXXXXXXXXRGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFG        RGGD+FFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLRIVCSFKF 83
          SRRKLEPFNCFEFL+IV  FKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

[Close]

BLAST of MELO3C006808.2 vs. TrEMBL
Match: tr|A0A0A0L658|A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.4e-32
Identity = 70/82 (85.37%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 1  MARDILPFEFGXXXXXXXXRGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFG        RGGD+FFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLRIVCSFKF 83
          SRRKLEPFNCFEFL+IV  FKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:

BLAST of MELO3C006808.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57263.1	1.3e-31	85.37	hypothetical protein Csa_3G175640 [Cucumis sativus]	[more]

BLAST of MELO3C006808.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C006808.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006808.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L658\|A0A0A0L658_CUCSA	8.4e-32	85.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016049	cell growth
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0045053	protein retention in Golgi apparatus
biological_process	GO:0010016	shoot system morphogenesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0017119	Golgi transport complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006808.2.1	MELO3C006808.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006808.2	Csa3G175640	Cucumber (Chinese Long) v2	cumedB223
MELO3C006808.2	CSPI03G15900	Wild cucumber (PI 183967)	cpimedB224
MELO3C006808.2	Cucsa.251690	Cucumber (Gy14) v1	cgymedB432
MELO3C006808.2	CmoCh04G003570	Cucurbita moschata (Rifu)	cmomedB777
MELO3C006808.2	CmoCh16G002080	Cucurbita moschata (Rifu)	cmomedB331
MELO3C006808.2	Lsi05G013270	Bottle gourd (USVL1VR-Ls)	lsimedB397
MELO3C006808.2	Cp4.1LG14g05560	Cucurbita pepo (Zucchini)	cpemedB233
MELO3C006808.2	Cp4.1LG01g03790	Cucurbita pepo (Zucchini)	cpemedB483
MELO3C006808.2	Cla006273	Watermelon (97103) v1	medwmB447
MELO3C006808.2	Cla97C05G089100	Watermelon (97103) v2	medwmbB423
MELO3C006808.2	Carg08016	Silver-seed gourd	carmedB0385
MELO3C006808.2	Carg16741	Silver-seed gourd	carmedB0869
MELO3C006808.2	CsaV3_3G016110	Cucumber (Chinese Long) v3	cucmedB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006808.2	Wax gourd	medwgoB530
MELO3C006808.2	Cucumber (Gy14) v2	cgybmedB201
MELO3C006808.2	Cucurbita maxima (Rimu)	cmamedB344
MELO3C006808.2	Cucurbita maxima (Rimu)	cmamedB779
MELO3C006808.2	Watermelon (Charleston Gray)	medwcgB416