Cla006273 (gene) Watermelon (97103) v1

Overview
NameCla006273
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 7354433 .. 7354687 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGTGGCGACGGCGAGCGCGGCCACGTCGTCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGCAGTTTACACGGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCAGAGAAAGAGAAGCAAAAGAAGGCTACAATCATTCAATTGCTTCGAGTTCTTGAAAATCGTCTGGTGTTTCAAATTCTAA

mRNA sequence

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGTGGCGACGGCGAGCGCGGCCACGTCGTCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGCAGTTTACACGGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCAGAGAAAGAGAAGCAAAAGAAGGCTACAATCATTCAATTGCTTCGAGTTCTTGAAAATCGTCTGGTGTTTCAAATTCTAA

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGTGGCGACGGCGAGCGCGGCCACGTCGTCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGCAGTTTACACGGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCAGAGAAAGAGAAGCAAAAGAAGGCTACAATCATTCAATTGCTTCGAGTTCTTGAAAATCGTCTGGTGTTTCAAATTCTAA

Protein sequence

MARDILPFEFGGGGGDGERGHVVGDIFFGKDDMKEYAWDAVYTEETVRFLETESAMKAQRKRSKRRLQSFNCFEFLKIVWCFKF
Homology
[Close]
BLAST of Cla006273 vs. TrEMBL
Match: A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.4e-33
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1 

Query: 1  MARDILPFEFGGGG-GDGERGHVVGDIFFGKDDMKEYAWDAVYTEETVRFLETESAMKAQ 60
          MARDILPFEFGGGG G+ ERG   GDIFFGKDDMKEYAWD VYTEETVRF+ETESA KA 
Sbjct: 1  MARDILPFEFGGGGAGESERG---GDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKAL 60

Query: 61 RKRSKRRLQSFNCFEFLKIVWCFKF 85
          RKRS+R+L+ FNCFEFLKIVWCFKF
Sbjct: 61 RKRSRRKLEPFNCFEFLKIVWCFKF 82

[Close]
BLAST of Cla006273 vs. NCBI nr
Match: gi|700202130|gb|KGN57263.1| (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1 

Query: 1  MARDILPFEFGGGG-GDGERGHVVGDIFFGKDDMKEYAWDAVYTEETVRFLETESAMKAQ 60
          MARDILPFEFGGGG G+ ERG   GDIFFGKDDMKEYAWD VYTEETVRF+ETESA KA 
Sbjct: 1  MARDILPFEFGGGGAGESERG---GDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKAL 60

Query: 61 RKRSKRRLQSFNCFEFLKIVWCFKF 85
          RKRS+R+L+ FNCFEFLKIVWCFKF
Sbjct: 61 RKRSRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:
BLAST of Cla006273 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L658_CUCSA9.4e-3383.53Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1[more]
BLAST of Cla006273 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202130|gb|KGN57263.1|1.4e-3283.53hypothetical protein Csa_3G175640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016049 cell growth
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0007030 Golgi organization
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009933 meristem structural organization
biological_process GO:0045053 protein retention in Golgi apparatus
biological_process GO:0010016 shoot system morphogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
cellular_component GO:0017119 Golgi transport complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006273Cla006273.1mRNA