Cla97C05G089100 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G089100
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr05 : 7324531 .. 7324785 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGTGGCGACGGCGAGCGCGGCCACGTCGTCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGCAGTTTACACGGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCAGAGAAAGAGAAGCAAAAGAAGGCTACAATCATTCAATTGCTTCGAGTTCTTGAAAATCGTCTGGTGTTTCAAATTCTAA

mRNA sequence

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGTGGCGACGGCGAGCGCGGCCACGTCGTCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGCAGTTTACACGGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCAGAGAAAGAGAAGCAAAAGAAGGCTACAATCATTCAATTGCTTCGAGTTCTTGAAAATCGTCTGGTGTTTCAAATTCTAA

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGTGGCGACGGCGAGCGCGGCCACGTCGTCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGCAGTTTACACGGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCAGAGAAAGAGAAGCAAAAGAAGGCTACAATCATTCAATTGCTTCGAGTTCTTGAAAATCGTCTGGTGTTTCAAATTCTAA

Protein sequence

MARDILPFEFGGGGGDGERGHVVGDIFFGKDDMKEYAWDAVYTEETVRFLETESAMKAQRKRSKRRLQSFNCFEFLKIVWCFKF

Homology

[Close]

BLAST of Cla97C05G089100 vs. NCBI nr
Match: KGN57263.1 (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 5.0e-31
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MARDILPFEFGGGG-GDGERGHVVGDIFFGKDDMKEYAWDAVYTEETVRFLETESAMKAQ 60
          MARDILPFEFGGGG G+ ERG   GDIFFGKDDMKEYAWD VYTEETVRF+ETESA KA 
Sbjct: 1  MARDILPFEFGGGGAGESERG---GDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKAL 60

Query: 61 RKRSKRRLQSFNCFEFLKIVWCFKF 85
          RKRS+R+L+ FNCFEFLKIVWCFKF
Sbjct: 61 RKRSRRKLEPFNCFEFLKIVWCFKF 82

[Close]

BLAST of Cla97C05G089100 vs. TrEMBL
Match: tr|A0A0A0L658|A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.3e-31
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MARDILPFEFGGGG-GDGERGHVVGDIFFGKDDMKEYAWDAVYTEETVRFLETESAMKAQ 60
          MARDILPFEFGGGG G+ ERG   GDIFFGKDDMKEYAWD VYTEETVRF+ETESA KA 
Sbjct: 1  MARDILPFEFGGGGAGESERG---GDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKAL 60

Query: 61 RKRSKRRLQSFNCFEFLKIVWCFKF 85
          RKRS+R+L+ FNCFEFLKIVWCFKF
Sbjct: 61 RKRSRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:

BLAST of Cla97C05G089100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57263.1	5.0e-31	83.53	hypothetical protein Csa_3G175640 [Cucumis sativus]	[more]

BLAST of Cla97C05G089100 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L658\|A0A0A0L658_CUCSA	3.3e-31	83.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1	[more]

BLAST of Cla97C05G089100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G089100 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G089100.1	Cla97C05G089100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G089100	Cla006273	Watermelon (97103) v1	wmwmbB206
Cla97C05G089100	Csa3G175640	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G089100	MELO3C006808	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G089100	CSPI03G15900	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G089100	Cucsa.251690	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G089100	CmoCh04G003570	Cucurbita moschata (Rifu)	cmowmbB739
Cla97C05G089100	CmoCh16G002080	Cucurbita moschata (Rifu)	cmowmbB331
Cla97C05G089100	Lsi05G013270	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G089100	MELO3C006808.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G089100	Carg16741	Silver-seed gourd	carwmbB0910
Cla97C05G089100	CsaV3_3G016110	Cucumber (Chinese Long) v3	cucwmbB206

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G089100	Silver-seed gourd	carwmbB0398
Cla97C05G089100	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G089100	Cucurbita maxima (Rimu)	cmawmbB346
Cla97C05G089100	Cucurbita maxima (Rimu)	cmawmbB767
Cla97C05G089100	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G089100	Wax gourd	wgowmbB178