Csa3G175640 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G175640
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 11832700 .. 11833154 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCCCTCGAAAGCTTCCATTCCATTTCTCCAAAAGACTACTCGCCGATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGCGGGCGAGAGCGAGCGCGGCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGTTTACACGGAGGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTCAGAAAGAGAAGCAGAAGAAAGCTAGAACCCTTCAATTGCTTTGAGTTCTTGAAAATCGTTTGGTGTTTCAAATTCTAACTAACTCTCTTGATTCTCTCTTATTTTTCCTCTTTGTGGATCGAATCAAATGATTCCTGATCCTTTTCTTGTGCTTCCCTCGATCTCGATGCTCATTCATCGGATTTTCCGAGCGAGGATATTTTGTAATTAGAAATTAATTAGAAATTTTGATTCCT

mRNA sequence

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGCGGGCGAGAGCGAGCGCGGCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGTTTACACGGAGGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTCAGAAAGAGAAGCAGAAGAAAGCTAGAACCCTTCAATTGCTTTGAGTTCTTGAAAATCGTTTGGTGTTTCAAATTCTAA

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGCGGGCGAGAGCGAGCGCGGCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGTTTACACGGAGGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTCAGAAAGAGAAGCAGAAGAAAGCTAGAACCCTTCAATTGCTTTGAGTTCTTGAAAATCGTTTGGTGTTTCAAATTCTAA

Protein sequence

MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKRSRRKLEPFNCFEFLKIVWCFKF*

Homology

[Close]

BLAST of Csa3G175640 vs. TrEMBL
Match: A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.4e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLKIVWCFKF 83
          SRRKLEPFNCFEFLKIVWCFKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

[Close]

BLAST of Csa3G175640 vs. NCBI nr
Match: gi|700202130|gb|KGN57263.1| (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 3.5e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLKIVWCFKF 83
          SRRKLEPFNCFEFLKIVWCFKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:

BLAST of Csa3G175640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L658_CUCSA	2.4e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1	[more]

BLAST of Csa3G175640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202130\|gb\|KGN57263.1\|	3.5e-41	100.00	hypothetical protein Csa_3G175640 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016049	cell growth
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0045053	protein retention in Golgi apparatus
biological_process	GO:0010016	shoot system morphogenesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0017119	Golgi transport complex
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU110570	cucumber EST collection version 3.0	transcribed_cluster
CU122618	cucumber EST collection version 3.0	transcribed_cluster
CU124623	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G175640.1	Csa3G175640.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU110570	CU110570	transcribed_cluster
CU122618	CU122618	transcribed_cluster
CU124623	CU124623	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G175640	Cla006273	Watermelon (97103) v1	cuwmB233
Csa3G175640	MELO3C006808	Melon (DHL92) v3.5.1	cumeB236
Csa3G175640	Lsi05G013270	Bottle gourd (USVL1VR-Ls)	culsiB210
Csa3G175640	MELO3C006808.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G175640	Cla97C05G089100	Watermelon (97103) v2	cuwmbB204
Csa3G175640	CSPI03G15900	Wild cucumber (PI 183967)	cpicuB120
Csa3G175640	Cucsa.251690	Cucumber (Gy14) v1	cgycuB366
Csa3G175640	CmoCh04G003570	Cucurbita moschata (Rifu)	cmocuB694
Csa3G175640	Cp4.1LG01g03790	Cucurbita pepo (Zucchini)	cpecuB394
Csa3G175640	Cp4.1LG14g05560	Cucurbita pepo (Zucchini)	cpecuB214
Csa3G175640	Carg08016	Silver-seed gourd	carcuB0401
Csa3G175640	Carg16741	Silver-seed gourd	carcuB0885

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G175640	Wax gourd	cuwgoB269
Csa3G175640	Cucurbita maxima (Rimu)	cmacuB329
Csa3G175640	Cucurbita maxima (Rimu)	cmacuB703
Csa3G175640	Cucurbita moschata (Rifu)	cmocuB317
Csa3G175640	Watermelon (Charleston Gray)	cuwcgB222
Csa3G175640	Cucumber (Gy14) v2	cgybcuB109