Cp4.1LG01g03790 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 1683304 .. 1683588 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCGATACCACTCCCCTCGAATTCGGCGGCGAGAGTGACGGCGGCCGTCGATGCGGCAAGTCTTCCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATCTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGCTTTCACTGAGAAAACGGTTCGATTCATTGAAAGTGAGTCCGCCATGAAATCTCTGAGAAAGAGAAGCAATAGAAGGCCAGAAACATTCGATTGCTTTGAGTTCTTGAAATTCGTGTGGTGCTTCATATTTTAA

mRNA sequence

ATGGCCATCGATACCACTCCCCTCGAATTCGGCGGCGAGAGTGACGGCGGCCGTCGATGCGGCAAGTCTTCCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATCTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGCTTTCACTGAGAAAACGGTTCGATTCATTGAAAGTGAGTCCGCCATGAAATCTCTGAGAAAGAGAAGCAATAGAAGGCCAGAAACATTCGATTGCTTTGAGTTCTTGAAATTCGTGTGGTGCTTCATATTTTAA

Coding sequence (CDS)

ATGGCCATCGATACCACTCCCCTCGAATTCGGCGGCGAGAGTGACGGCGGCCGTCGATGCGGCAAGTCTTCCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATCTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGCTTTCACTGAGAAAACGGTTCGATTCATTGAAAGTGAGTCCGCCATGAAATCTCTGAGAAAGAGAAGCAATAGAAGGCCAGAAACATTCGATTGCTTTGAGTTCTTGAAATTCGTGTGGTGCTTCATATTTTAA

Protein sequence

MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFIESESAMKSLRKRSNRRPETFDCFEFLKFVWCFIF
Homology
[Close]
BLAST of Cp4.1LG01g03790 vs. TrEMBL
Match: A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 58/94 (61.70%), Postives = 64/94 (68.09%), Query Frame = 1 

Query: 1  MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MA D  P EFGG   G    G            GDIFFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MARDILPFEFGGGGAGESERG------------GDIFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ESESAMKSLRKRSNRRPETFDCFEFLKFVWCFIF 95
          E+ESA K+LRKRS R+ E F+CFEFLK VWCF F
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLKIVWCFKF 82

[Close]
BLAST of Cp4.1LG01g03790 vs. NCBI nr
Match: gi|700202130|gb|KGN57263.1| (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 58/94 (61.70%), Postives = 64/94 (68.09%), Query Frame = 1 

Query: 1  MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MA D  P EFGG   G    G            GDIFFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MARDILPFEFGGGGAGESERG------------GDIFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ESESAMKSLRKRSNRRPETFDCFEFLKFVWCFIF 95
          E+ESA K+LRKRS R+ E F+CFEFLK VWCF F
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L658_CUCSA1.3e-2261.70Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1[more]
BLAST of Cp4.1LG01g03790 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202130|gb|KGN57263.1|1.9e-2261.70hypothetical protein Csa_3G175640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03790.1Cp4.1LG01g03790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03790Cucsa.251690Cucumber (Gy14) v1cgycpeB0681
Cp4.1LG01g03790CmoCh16G002080Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g03790CmoCh04G003570Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03790Cla006273Watermelon (97103) v1cpewmB437
Cp4.1LG01g03790Csa3G175640Cucumber (Chinese Long) v2cpecuB394
Cp4.1LG01g03790MELO3C006808Melon (DHL92) v3.5.1cpemeB414
Cp4.1LG01g03790CSPI03G15900Wild cucumber (PI 183967)cpecpiB393
Cp4.1LG01g03790Lsi05G013270Bottle gourd (USVL1VR-Ls)cpelsiB367
Cp4.1LG01g03790MELO3C006808.2Melon (DHL92) v3.6.1cpemedB483
Cp4.1LG01g03790CsaV3_3G016110Cucumber (Chinese Long) v3cpecucB0492
Cp4.1LG01g03790Carg08016Silver-seed gourdcarcpeB0527
Cp4.1LG01g03790Carg16741Silver-seed gourdcarcpeB1216
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03790Cucumber (Gy14) v2cgybcpeB370
Cp4.1LG01g03790Wax gourdcpewgoB0520
Cp4.1LG01g03790Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g03790Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g03790Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03790Watermelon (Charleston Gray)cpewcgB399