CmoCh16G002080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 916129 .. 916436 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGAGATACCCTTCCCTACGAATTCGGCGGCGGCGGCGGCAAGTCTTGCAGCAGTCCTTCGAAATACGATGTCGTCGGAGACATCTTTTTCGGAAAGGATGATATGAAAGGATACGTATGGGATGAAGTTTTCACTGAAGAAACAGTTCGATTCCTGGAAACAGAGTCCGCCGTGGAAGTTCTGAGAAAGAGAAGCAAGAGAAGGCTAGAAACGTTCAAATGCTTTGAGTTCTTGAAGTTTCTGTGGTGTTTCAATTTCTAACTCTCTCTCTTTTTTATTTTTCGTCTTTGTAGATCGATTAA

mRNA sequence

ATGGCGAGAGATACCCTTCCCTACGAATTCGGCGGCGGCGGCGGCAAGTCTTGCAGCAGTCCTTCGAAATACGATGTCGTCGGAGACATCTTTTTCGGAAAGGATGATATGAAAGGATACGTATGGGATGAAGTTTTCACTGAAGAAACAGTTCGATTCCTGGAAACAGAGTCCGCCGTGGAAATCGATTAA

Coding sequence (CDS)

ATGGCGAGAGATACCCTTCCCTACGAATTCGGCGGCGGCGGCGGCAAGTCTTGCAGCAGTCCTTCGAAATACGATGTCGTCGGAGACATCTTTTTCGGAAAGGATGATATGAAAGGATACGTATGGGATGAAGTTTTCACTGAAGAAACAGTTCGATTCCTGGAAACAGAGTCCGCCGTGGAAATCGATTAA
Homology
[Close]
BLAST of CmoCh16G002080 vs. TrEMBL
Match: A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-12
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 1  MARDTLPYEFGGGGGKSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVRFLETESA 60
          MARD LP+EFGGGG        + +  GDIFFGKDDMK Y WD V+TEETVRF+ETESA
Sbjct: 1  MARDILPFEFGGGGA------GESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESA 53

[Close]
BLAST of CmoCh16G002080 vs. NCBI nr
Match: gi|700202130|gb|KGN57263.1| (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-12
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 1  MARDTLPYEFGGGGGKSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVRFLETESA 60
          MARD LP+EFGGGG        + +  GDIFFGKDDMK Y WD V+TEETVRF+ETESA
Sbjct: 1  MARDILPFEFGGGGA------GESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESA 53

The following BLAST results are available for this feature:
BLAST of CmoCh16G002080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L658_CUCSA2.4e-1266.10Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1[more]
BLAST of CmoCh16G002080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202130|gb|KGN57263.1|3.4e-1266.10hypothetical protein Csa_3G175640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002080.1CmoCh16G002080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002080Lsi05G013270Bottle gourd (USVL1VR-Ls)cmolsiB300
CmoCh16G002080Cp4.1LG01g03790Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002080MELO3C006808.2Melon (DHL92) v3.6.1cmomedB331
CmoCh16G002080CsaV3_3G016110Cucumber (Chinese Long) v3cmocucB0379
CmoCh16G002080Cla97C05G089100Watermelon (97103) v2cmowmbB331
CmoCh16G002080Carg08016Silver-seed gourdcarcmoB0509
CmoCh16G002080Carg16741Silver-seed gourdcarcmoB1175
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G002080CmoCh04G003570Cucurbita moschata (Rifu)cmocmoB286
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002080Wax gourdcmowgoB0436
CmoCh16G002080Cucumber (Gy14) v1cgycmoB0704
CmoCh16G002080Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002080Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002080Wild cucumber (PI 183967)cmocpiB325
CmoCh16G002080Cucumber (Chinese Long) v2cmocuB317
CmoCh16G002080Melon (DHL92) v3.5.1cmomeB289
CmoCh16G002080Watermelon (Charleston Gray)cmowcgB290
CmoCh16G002080Watermelon (97103) v1cmowmB310
CmoCh16G002080Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002080Cucumber (Gy14) v2cgybcmoB312