Carg16741 (gene) Silver-seed gourd

Overview
NameCarg16741
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_087 : 234935 .. 235204 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGAGATACCCTTCCCTACGAATTTGGCGTCGGCGGCGGCGGCAAGTCTTGCAGCAGTCCTTCGAAATACGATGTCGTCGGAGACATCTTTTTCGGTAAGGATGATATGAAAGGATACGTATGGGATGAAGTTTTCACTGAAGAAACAGTTCGATTCCTGGAAACAGAGTCCGCCGTGGAAGTTCTGAGAAAGAGAAGCAAGAGAAGGCTAGAAACGTTCAAATGCTTTGAGTTCTTGAAGTTTCTGTGGTGTTTCAATTTCTAA

mRNA sequence

ATGGCGAGAGATACCCTTCCCTACGAATTTGGCGTCGGCGGCGGCGGCAAGTCTTGCAGCAGTCCTTCGAAATACGATGTCGTCGGAGACATCTTTTTCGGTAAGGATGATATGAAAGGATACGTATGGGATGAAGTTTTCACTGAAGAAACAGTTCGATTCCTGGAAACAGAGTCCGCCGTGGAAGTTCTGAGAAAGAGAAGCAAGAGAAGGCTAGAAACGTTCAAATGCTTTGAGTTCTTGAAGTTTCTGTGGTGTTTCAATTTCTAA

Coding sequence (CDS)

ATGGCGAGAGATACCCTTCCCTACGAATTTGGCGTCGGCGGCGGCGGCAAGTCTTGCAGCAGTCCTTCGAAATACGATGTCGTCGGAGACATCTTTTTCGGTAAGGATGATATGAAAGGATACGTATGGGATGAAGTTTTCACTGAAGAAACAGTTCGATTCCTGGAAACAGAGTCCGCCGTGGAAGTTCTGAGAAAGAGAAGCAAGAGAAGGCTAGAAACGTTCAAATGCTTTGAGTTCTTGAAGTTTCTGTGGTGTTTCAATTTCTAA

Protein sequence

MARDTLPYEFGVGGGGKSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVRFLETESAVEVLRKRSKRRLETFKCFEFLKFLWCFNF
Homology
[Close]
BLAST of Carg16741 vs. NCBI nr
Match: KGN57263.1 (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 3.6e-24
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 0 

Query: 1  MARDTLPYEFGVGGGGKSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVRFLETESA 60
          MARD LP+EFG GG G+S       +  GDIFFGKDDMK Y WD V+TEETVRF+ETESA
Sbjct: 1  MARDILPFEFGGGGAGES-------ERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESA 60

Query: 61 VEVLRKRSKRRLETFKCFEFLKFLWCFNF 90
           + LRKRS+R+LE F CFEFLK +WCF F
Sbjct: 61 KKALRKRSRRKLEPFNCFEFLKIVWCFKF 82

[Close]
BLAST of Carg16741 vs. TrEMBL
Match: tr|A0A0A0L658|A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-24
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 0 

Query: 1  MARDTLPYEFGVGGGGKSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVRFLETESA 60
          MARD LP+EFG GG G+S       +  GDIFFGKDDMK Y WD V+TEETVRF+ETESA
Sbjct: 1  MARDILPFEFGGGGAGES-------ERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESA 60

Query: 61 VEVLRKRSKRRLETFKCFEFLKFLWCFNF 90
           + LRKRS+R+LE F CFEFLK +WCF F
Sbjct: 61 KKALRKRSRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:
BLAST of Carg16741 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57263.13.6e-2466.29hypothetical protein Csa_3G175640 [Cucumis sativus][more]
BLAST of Carg16741 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg16741 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg16741 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L658|A0A0A0L658_CUCSA2.4e-2466.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16741-RACarg16741-RAmRNA