CmoCh04G003570 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G003570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 1739763 .. 1743903 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCGATACCACTCCCTTCGAATTCGGCGGCGACGGTGACGGCGGCCGTCGATGCGGCAAGTCTTGCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATCTTCTTCGGTAAGGATGATATGAAGGAATACGCATGGGATGGAGCTTTCACTGAGAAAACGGTTCGATTCATTGAAAGTGAGTCCGCCATGAAAGCTCTGAGAAAGAGAAGCAATAGAAGGCCAGAAACATTCGATTGCTTTGAGTTCTTGAAATTCGTGTGGTGCTTCATATTTTAACTCTCTTCTTCTTCCACGAACATCGATTCGAATGTCTATATCCATCGATGAATTTCGATCTCCTTGTTTGTTTTCTTTCTCCTTCTTCTTCCTTGCTCGATCGATGCTGAATCATCGAAATTTTCCGAGCGAGGATTTGTAATTAATTAGAATTGTGATCTCTGGATCCGTCAATTGAAATGATTAAAATGCTTCAGATATCATCGATCTCTGCTCGTTTCAATCTGTTTGTATAGGAAGACGAGTGAAAATTGTGCTCTGAATCTGAATAATTTTCTTGGAATCCAAACAGTATTAGGTGAACCGAATGATGCCAAAATTTTGCTTGATCAACTCGAATTCCTTGGAAAGCAATTTGCATTCTACAATAATGGAGTTGTTGATAAATCTCTCTGTTCTTATTTTTCAATTGTCACACGTGAAAATCAAGTGTAAATATGAAGAAGAAGAACAACAACAAATTAGTGAAAAACAAAATTCAAATCCAATAAAACATATAAAATAATTCAAACATTTTTTGAAATTATGATTTGGAAAATGAACCCACCAAATTTGTCTGGACTAAAAAAAAATAATAACTTTGACCAAACCAAATAATTTATTTGGTTTATTAGAGTGACCTTTAATTCGGAGTAGCACGACGTAGCAACATTTTTATTAAAAATGTATAAAAAAAAAAATTAGAGTGACTCTTAATTCGAAATGATATAGAATAAAAATTTTAACAGATCGGAAAGCGACCTTACTACTTATAATTTTAAAAGTTTAATTTAGTCTGCACGGACTAAATTTAATATAAATTATAATATGGTTAGAAAATTTTGATTTTTATTATAAAATAAAATAGAAAATAATAAATAAAAAAGAGGTGAGGAAAATAAAATTTATAAATTGGAGGTTTGACCGTCGGTGCATTTGATTGTGTTGATGCTTTCCAAGTTTGATTGCCAAAGAGCTTATCATATTCCTTTTTCCTCCACTCATTTTTTTATATATTTTTTAATATTATTATTATTATTATTATTATTATTATTATTGTAAACATTATAAACATTATTTTATTTCTCAAACCTATAGAGGATTCATTTTGTCTGTGCATCACTTGAAACCGACCATCCATTTTTAAATCACAATAATTCCAATAATCTCAAGTGTTATTTTATTTTTTTTTATTTTTTCAATGTTTTTAATTTAAAAATAATTGTGGGAACCGAAATCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTACCTATTAGGAATGGGTTATTATTGCAAATTTATATTTCAGAAAATAAACAGAATTTTCCTTCCATTTTGGGCCTTGAATGGGCCCAACATGAATACAGGCCACGGCCCGTAATTTACTTAAAGCCCACATTCAAAAAAGGCTCGATACAATTTTTTTTTTTTTTTAATTAGGTTAAATTATAAATGTTTGTGTATATTTTATTATTAAAATATTTAAAAGTATTTAATAAATTATATGTTTAACAATAAGCATAATTAAGTTCTCCATAAATCCTGTTATTACTAAGGTTTGTACATTTAAAATAAAGAACAATAAGAGGATTTTACACATTAATTAATCAGTTAAATTATGTAGCCGTTCGACGGTTTTCCACGGTCAACGTCAAACGGTCTTCAGAGCCGTTATCCGTCACGCCAGCTGTCTCGACCTGCGCGGATTTTACACAGACTATATATTTCTCCCGCAGTCACACTCTTATTCGGCACATTCTCATACTAGAATCAGAGCGCTCCATCAATGGCCTCTTCCCTTTTGAGTGTTCGTTGCCGAAATCAAACGGATCATTACCAGGCAATCGGAGAGCAGAATCGAAAGAAGTATCTCGCCTCGTCTCGGTGATGCAAATAGAGGTAATGTAACTTAATTTCAGCCGGCTATTCCGAATTAGGGGTTCATTGGAGAACTTAATCAAATGATTGTTCGTTTTTGTCGACACGTTTTGTATTTTTTCGTGGTTTCGATTACGGAGGATTAGGGCGTTTTTAGTAGGTTCATTTCTCCCATGGTAGCGTGATTATTATCTTGGACTCCTCGTTTCATTCCCTGTCATCTTCTATCTCTTCTCTGTGTGATGAGCCAATGGACAATCCTGATATTCAAATTTATGTATTGGCAGAAGAGAGCAGGACGACGAACTCTTATGTCATCGAGTTTTGTTCCGATAACAGAGAGGGGAAGAACAAGGCAGTTGTTCTTGATGAAGTGATTGCTTGGGCAACAGAAAAGCAGTTCGTCTTGTCATTGAGGCTGGTTGGATTTTCGCATCTGCTAGGAATACTGGTATGATTCCAACCCCAAGGCTGTGAAGTTGAATTTAAGTTTTTAGGGGGCGTGGGAAGTAAATGTTGTTTTGAAGTTTTTATTTTATTTTATTTATCATTTGTTGGCTGTGAAGTTGTGTATTGTAGCTTTAGCTTCTTTAGATGTTACCTCTGTTTGGATTATGTCAACATTTGACTGCAAGTAAGAACAGATCACAAAATATTGCTTGAAACATGTCTGGCAATGCTACTAATTCTTAGATTTCTTAATTACTCAACTAACATGTTTAGAAACGAAACTGAGAGGCCTTTCAGGGTGCATCTTCCTTCTTATATTCCTCAAGCTTAGTACAGCACAGAACATATTTAAGACAACACTTTCTGTGCAGGACACCCTAACTGAAGGCACTATATAGTGCCAGTTCACAAAAAGAGTCAATAGGTTTAACTTTATCTTGGATACCACATGATTCCTTTCGATCCAATATAAAAGCTTCTAGCAGAAAGGACCAACCTCTAGCAGAAAAATTACAATGCAGGAACAAAAGGTCAAAGATTTTCTCTTCTTTTTAGTACATACAGCAAGCATTTGGAACTTTTGGAGCTTTTCCATGAATGTCAAGGCAAAAAGATACACTCTCAGCTTCTACAAAGCGGATTACCCTCTAACAAACTGCCACAAACAATCATAACGAACATCGTGTATACACTTCGGTGATTTGGGGTCTACCAGTTTTCTGGCACTAATTTTCGTTAGGCTGTAATATGACATGACAACATCCTCTGATTAAGTTATCAAGTGTGATATATGCAGATTCTTCCATAGATTTTTTTTTTTTACCAATATGAACAACATTCAGTTTTTGCTGTTTTATATTTTCAATGTGTGAATTAACAGCCCTGCAAAATGAAGGACAAACTTTGTTTTATTTTCTATTAAGTTTACGAGTTAAAACTTTTTGACATTTTCTGTTTCTTATATTTTCTCTTAAAGGTAGAAGAAAGAATTTGA

mRNA sequence

ATGGCCATCGATACCACTCCCTTCGAATTCGGCGGCGACGGTGACGGCGGCCGTCGATGCGGCAAGTCTTGCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATCTTCTTCGGTAAGGATGATATGAAGGAATACGCATGGGATGGAGCTTTCACTGAGAAAACGGTTCGATTCATTGAAAGTGAGTCCGCCATGAAAGCTCTGAGAAAGAGAAGCAATAGAAGGCCAGAAACATTCGATTGCTTTGAGTTCTTGAAATTCGTGTGGCAATCGGAGAGCAGAATCGAAAGAAGTATCTCGCCTCGTCTCGGTGATGCAAATAGAGAAGAGAGCAGGACGACGAACTCTTATGTCATCGAGTTTTGTTCCGATAACAGAGAGGGGAAGAACAAGGCAGTTGTTCTTGATGAAGTGATTGCTTGGGCAACAGAAAAGCAGTTCGTCTTGTCATTGAGGCTGGTTGGATTTTCGCATCTGCTAGGAATACTGGTAGAAGAAAGAATTTGA

Coding sequence (CDS)

ATGGCCATCGATACCACTCCCTTCGAATTCGGCGGCGACGGTGACGGCGGCCGTCGATGCGGCAAGTCTTGCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATCTTCTTCGGTAAGGATGATATGAAGGAATACGCATGGGATGGAGCTTTCACTGAGAAAACGGTTCGATTCATTGAAAGTGAGTCCGCCATGAAAGCTCTGAGAAAGAGAAGCAATAGAAGGCCAGAAACATTCGATTGCTTTGAGTTCTTGAAATTCGTGTGGCAATCGGAGAGCAGAATCGAAAGAAGTATCTCGCCTCGTCTCGGTGATGCAAATAGAGAAGAGAGCAGGACGACGAACTCTTATGTCATCGAGTTTTGTTCCGATAACAGAGAGGGGAAGAACAAGGCAGTTGTTCTTGATGAAGTGATTGCTTGGGCAACAGAAAAGCAGTTCGTCTTGTCATTGAGGCTGGTTGGATTTTCGCATCTGCTAGGAATACTGGTAGAAGAAAGAATTTGA

Homology

[Close]

BLAST of CmoCh04G003570 vs. TrEMBL
Match: A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 1  MAIDTTPFEFGGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MA D  PFEFGG G G    G            GDIFFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MARDILPFEFGGGGAGESERG------------GDIFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ESESAMKALRKRSNRRPETFDCFEFLKFVW 91
          E+ESA KALRKRS R+ E F+CFEFLK VW
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLKIVW 78

[Close]

BLAST of CmoCh04G003570 vs. NCBI nr
Match: gi|700202130|gb|KGN57263.1| (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 1  MAIDTTPFEFGGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MA D  PFEFGG G G    G            GDIFFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MARDILPFEFGGGGAGESERG------------GDIFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ESESAMKALRKRSNRRPETFDCFEFLKFVW 91
          E+ESA KALRKRS R+ E F+CFEFLK VW
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLKIVW 78

The following BLAST results are available for this feature:

BLAST of CmoCh04G003570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L658_CUCSA	1.4e-22	64.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1	[more]

BLAST of CmoCh04G003570 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202130\|gb\|KGN57263.1\|	2.0e-22	64.44	hypothetical protein Csa_3G175640 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G003570.1	CmoCh04G003570.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G003570	Cucsa.251690	Cucumber (Gy14) v1	cgycmoB0716
CmoCh04G003570	CmaCh04G003400	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G003570	Cla006273	Watermelon (97103) v1	cmowmB702
CmoCh04G003570	Csa3G175640	Cucumber (Chinese Long) v2	cmocuB694
CmoCh04G003570	MELO3C006808	Melon (DHL92) v3.5.1	cmomeB685
CmoCh04G003570	CSPI03G15900	Wild cucumber (PI 183967)	cmocpiB704
CmoCh04G003570	Lsi05G013270	Bottle gourd (USVL1VR-Ls)	cmolsiB681
CmoCh04G003570	Cp4.1LG01g03790	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G003570	MELO3C006808.2	Melon (DHL92) v3.6.1	cmomedB777
CmoCh04G003570	CsaV3_3G016110	Cucumber (Chinese Long) v3	cmocucB0823
CmoCh04G003570	Cla97C05G089100	Watermelon (97103) v2	cmowmbB739
CmoCh04G003570	Carg08016	Silver-seed gourd	carcmoB0514
CmoCh04G003570	Carg16741	Silver-seed gourd	carcmoB1177

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G003570	CmoCh16G002080	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G003570	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G003570	Watermelon (Charleston Gray)	cmowcgB664
CmoCh04G003570	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G003570	Cucumber (Gy14) v2	cgybcmoB394
CmoCh04G003570	Wax gourd	cmowgoB0852