MELO3C006808 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006808
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase II subunit RPB2
Locationchr6 : 6250194 .. 6250885 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACCTCCAAAGGTTCCATTTCTCCAAAAGGCTACTCCCCGATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGGGGGCGAGAGCGAGCGCGGCGGAGACGTTTTCTTCGGTAAGGATGATATGAAAGAGTACGCATGGGATGGAGTTTACACCGAAGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTGAGAAAGAGAAGCAGAAGAAAGCTAGAACCATTCAATTGCTTTGAGTTCTTGAGAATCGTTTGCTCTTTCAAATTCTAACTCTCTTCATTCTCTTTTAATTTTTCCTCTTTGTAGATCGAATGAAATGTTCATATCCATTTAATGATCTTCGATCCTTTTTCTTGTGCTTCGCTCGATCTCGATGCTCATTCATCGGAATTTTCTGAGCCAGGATTTTGTAATTAGAAATTGTGATTTCTGTATATACTTCTATTGTTTAGAAAGCTTCAGAATGTGTATAAAATCTCTTTCTCTTTTGCAATTTCAATTTCAATTTGGTGTGAGGAATTTTCTTGGATTTCAAACAGCACCGGGTCAACCGAGTGACGCAGATTTTGCTTGAATCGATGAACTCGAATTCTTTTGAAAGTAAATTACATTTTTTTTCATGCGTAAACGTGACTTCGTTTACGCAAACTAATGTCTACATTTAGTGAAATT

mRNA sequence

AGACCTCCAAAGGTTCCATTTCTCCAAAAGGCTACTCCCCGATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGGGGGCGAGAGCGAGCGCGGCGGAGACGTTTTCTTCGGTAAGGATGATATGAAAGAGTACGCATGGGATGGAGTTTACACCGAAGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTGAGAAAGAGAAGCAGAAGAAAGCTAGAACCATTCAATTGCTTTGAGTTCTTGAGAATCGTTTGCTCTTTCAAATTCTAACTCTCTTCATTCTCTTTTAATTTTTCCTCTTTGTAGATCGAATGAAATGTTCATATCCATTTAATGATCTTCGATCCTTTTTCTTGTGCTTCGCTCGATCTCGATGCTCATTCATCGGAATTTTCTGAGCCAGGATTTTGTAATTAGAAATTGTGATTTCTGTATATACTTCTATTGTTTAGAAAGCTTCAGAATGTGTATAAAATCTCTTTCTCTTTTGCAATTTCAATTTCAATTTGGTGTGAGGAATTTTCTTGGATTTCAAACAGCACCGGGTCAACCGAGTGACGCAGATTTTGCTTGAATCGATGAACTCGAATTCTTTTGAAAGTAAATTACATTTTTTTTCATGCGTAAACGTGACTTCGTTTACGCAAACTAATGTCTACATTTAGTGAAATT

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGGGGGCGAGAGCGAGCGCGGCGGAGACGTTTTCTTCGGTAAGGATGATATGAAAGAGTACGCATGGGATGGAGTTTACACCGAAGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTGAGAAAGAGAAGCAGAAGAAAGCTAGAACCATTCAATTGCTTTGAGTTCTTGAGAATCGTTTGCTCTTTCAAATTCTAA

Protein sequence

MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKRSRRKLEPFNCFEFLRIVCSFKF*
Homology
[Close]
BLAST of MELO3C006808 vs. TrEMBL
Match: A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.6e-38
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGG GESERGGD+FFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLRIVCSFKF 83
          SRRKLEPFNCFEFL+IV  FKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

[Close]
BLAST of MELO3C006808 vs. NCBI nr
Match: gi|700202130|gb|KGN57263.1| (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 

Query: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGG GESERGGD+FFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFEFLRIVCSFKF 83
          SRRKLEPFNCFEFL+IV  FKF
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:
BLAST of MELO3C006808 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L658_CUCSA9.6e-3893.90Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1[more]
BLAST of MELO3C006808 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202130|gb|KGN57263.1|1.4e-3793.90hypothetical protein Csa_3G175640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016049 cell growth
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0007030 Golgi organization
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009933 meristem structural organization
biological_process GO:0045053 protein retention in Golgi apparatus
biological_process GO:0010016 shoot system morphogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005829 cytosol
cellular_component GO:0017119 Golgi transport complex
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU43612melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006808T1MELO3C006808T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU43612MU43612transcribed_cluster