CSPI03G15900 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G15900
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 11910371 .. 11910964 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGCGGGCGAGAGCGAGCGCGGCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGTTTACACGGAGGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTCAGAAAGAGAAGCAGAAGAAAGCTAGAACCCTTCAATTGCTTTGAGTTCTTGAAAATCGTTTGGTGTTTCAAATTCTAACTAACTCTCTTGATTCTCTCTTATTTTTCCTCTTTGTGGATCGAATCAAATGATTCCTGATCCTTTTCTTGTGCTTCCCTCGATCTCGATGCTCATTCATCGGAATTTTCCGAGCGAGGATATTTTGTAATTAGAAATTAATTAGAAATTTTGATTCCTGTATATACTTGAATTGCTTAGAAAGCTTCAGAATGTATATAAAATATCTTCTTGTTATTATTGTTGCAATTTCAATTCCAATTCCAATTTGCTTTTAGGAGTTTTCTTGGAATCCAAACAGTATCAGGTCAACTGAGTGATGGAGATTTTGCTTGGATCGATGAACTCGAATTCCTTGGAAAGTAG

mRNA sequence

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGCGGGCGAGAGCGAGCGCGGCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGTTTACACGGAGGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTCAGAAAGAGAAGCAGAAGAAAGCTAGAACCCTTCAATTGCTTTGAGAGTTTTCTTGGAATCCAAACAGTATCAGGTCAACTGAGTGATGGAGATTTTGCTTGGATCGATGAACTCGAATTCCTTGGAAAGTAG

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGGGGCGGCGGCGCGGGCGAGAGCGAGCGCGGCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGTTTACACGGAGGAAACAGTCCGATTCATCGAAACAGAATCCGCCAAGAAAGCTCTCAGAAAGAGAAGCAGAAGAAAGCTAGAACCCTTCAATTGCTTTGAGAGTTTTCTTGGAATCCAAACAGTATCAGGTCAACTGAGTGATGGAGATTTTGCTTGGATCGATGAACTCGAATTCCTTGGAAAGTAG

Homology

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BLAST of CSPI03G15900 vs. TrEMBL
Match: A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.0e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFE 73
          SRRKLEPFNCFE
Sbjct: 61 SRRKLEPFNCFE 72

[Close]

BLAST of CSPI03G15900 vs. NCBI nr
Match: gi|700202130|gb|KGN57263.1| (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60
          MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SRRKLEPFNCFE 73
          SRRKLEPFNCFE
Sbjct: 61 SRRKLEPFNCFE 72

The following BLAST results are available for this feature:

BLAST of CSPI03G15900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G15900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L658_CUCSA	1.0e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1	[more]

BLAST of CSPI03G15900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G15900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202130\|gb\|KGN57263.1\|	1.5e-33	100.00	hypothetical protein Csa_3G175640 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016049	cell growth
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0045053	protein retention in Golgi apparatus
biological_process	GO:0010016	shoot system morphogenesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0017119	Golgi transport complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G15900.1	CSPI03G15900.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G15900	Cla006273	Watermelon (97103) v1	cpiwmB231
CSPI03G15900	Csa3G175640	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G15900	MELO3C006808	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G15900	Lsi05G013270	Bottle gourd (USVL1VR-Ls)	cpilsiB208
CSPI03G15900	MELO3C006808.2	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G15900	CsaV3_3G016110	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G15900	Cla97C05G089100	Watermelon (97103) v2	cpiwmbB209
CSPI03G15900	Cucsa.251690	Cucumber (Gy14) v1	cgycpiB383
CSPI03G15900	CmoCh04G003570	Cucurbita moschata (Rifu)	cmocpiB704
CSPI03G15900	Cp4.1LG01g03790	Cucurbita pepo (Zucchini)	cpecpiB393
CSPI03G15900	Cp4.1LG14g05560	Cucurbita pepo (Zucchini)	cpecpiB217
CSPI03G15900	Carg08016	Silver-seed gourd	carcpiB0406
CSPI03G15900	Carg16741	Silver-seed gourd	carcpiB0905

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G15900	Wax gourd	cpiwgoB269
CSPI03G15900	Cucurbita maxima (Rimu)	cmacpiB335
CSPI03G15900	Cucurbita maxima (Rimu)	cmacpiB712
CSPI03G15900	Cucurbita moschata (Rifu)	cmocpiB325
CSPI03G15900	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G15900	Cucumber (Gy14) v2	cgybcpiB110