Cla006273.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006273
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 7354433 .. 7354687 (-)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGTGGCGACGGCGAGCGCGGCCACGTCGTCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGCAGTTTACACGGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCAGAGAAAGAGAAGCAAAAGAAGGCTACAATCATTCAATTGCTTCGAGTTCTTGAAAATCGTCTGGTGTTTCAAATTCTAA

mRNA sequence

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGTGGCGACGGCGAGCGCGGCCACGTCGTCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGCAGTTTACACGGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCAGAGAAAGAGAAGCAAAAGAAGGCTACAATCATTCAATTGCTTCGAGTTCTTGAAAATCGTCTGGTGTTTCAAATTCTAA

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCCTTCGAATTCGGCGGCGGCGGTGGCGACGGCGAGCGCGGCCACGTCGTCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGCAGTTTACACGGAAGAAACAGTCCGATTCCTGGAAACAGAGTCCGCCATGAAAGCTCAGAGAAAGAGAAGCAAAAGAAGGCTACAATCATTCAATTGCTTCGAGTTCTTGAAAATCGTCTGGTGTTTCAAATTCTAA

Protein sequence

MARDILPFEFGGGGGDGERGHVVGDIFFGKDDMKEYAWDAVYTEETVRFLETESAMKAQRKRSKRRLQSFNCFEFLKIVWCFKF

Homology

[Close]

BLAST of Cla006273 vs. TrEMBL
Match: A0A0A0L658_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.4e-33
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 1  MARDILPFEFGGGG-GDGERGHVVGDIFFGKDDMKEYAWDAVYTEETVRFLETESAMKAQ 60
          MARDILPFEFGGGG G+ ERG   GDIFFGKDDMKEYAWD VYTEETVRF+ETESA KA 
Sbjct: 1  MARDILPFEFGGGGAGESERG---GDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKAL 60

Query: 61 RKRSKRRLQSFNCFEFLKIVWCFKF 85
          RKRS+R+L+ FNCFEFLKIVWCFKF
Sbjct: 61 RKRSRRKLEPFNCFEFLKIVWCFKF 82

[Close]

BLAST of Cla006273 vs. NCBI nr
Match: gi|700202130|gb|KGN57263.1| (hypothetical protein Csa_3G175640 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 1  MARDILPFEFGGGG-GDGERGHVVGDIFFGKDDMKEYAWDAVYTEETVRFLETESAMKAQ 60
          MARDILPFEFGGGG G+ ERG   GDIFFGKDDMKEYAWD VYTEETVRF+ETESA KA 
Sbjct: 1  MARDILPFEFGGGGAGESERG---GDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKAL 60

Query: 61 RKRSKRRLQSFNCFEFLKIVWCFKF 85
          RKRS+R+L+ FNCFEFLKIVWCFKF
Sbjct: 61 RKRSRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:

BLAST of Cla006273 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L658_CUCSA	9.4e-33	83.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175640 PE=4 SV=1	[more]

BLAST of Cla006273 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202130\|gb\|KGN57263.1\|	1.4e-32	83.53	hypothetical protein Csa_3G175640 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla006273	Cla006273	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla006273	Cla006273.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla006273.1.cds1	Cla006273.1.cds1	CDS