Lsi05G003120 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Calcium binding protein
Location	chr05 : 3993198 .. 3994363 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGGATGAAGAACACATCCCCAATGGCTTCGCAAAATCACAAATCTGATTGCCCTAACTTCAGCAAAAATCAGTTGAACAGAGCGATTTCGATGTAGAAGGAGACAACACCAGGTGTTTCCAATGCCAATAATTTAGGGCAAAATAGCGATTATTAAAGGAGCAATGAAAATTGAAGAAGAGGAGAAAGAAAGAAGCATTTGCCCTAAGTTTCAGATTCATTCCAAATCAAAGTTAAGTGCAGAAAATGGCGGACAGTGGCGTAAGCTCAGCCGAATGCGAGAGGATTTTCAAGCGATTCGATGCTAATGGCGACGGGAAGATCTCGGCGACGGAGCTGGGCGATGCTTTGAACGGATTTGGAGTGAACGCTGAGGACGCCAAGAGGATGATGGACGCCATTGATAAAGATGGCGATGGCTGCATTTCCTTTGAAGAGTTCGCCGATTTTGCTAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAGGCGTTTTAGGTTTTTGTTTCAATTTAAGATCTGATATATGATGAAGAAAATATGGATATGGTTACAATGAAGGAGATTTTTTTTTTTTTTTACTACGTATATTTAAACATAACATACTATGTTTCTCCTCAATGAATGTTACAAATATTAACTTTGATTAAATCTCATTTTCGTCCCTAAACTTTATTCATAAGCTCTAATTTGAACTTTAGAAAAATGTTTTTTTTGTCCTTCACTTTTAAAATATTTATTTTGATCCTCAAACTTTGATTATTTTGTTCTTACCTTGTGTCTTACTATCTTTAAGATTGATAATTTAAATAGGATCCAACTAAAAAAGACTAGTGATTGGCTCTTAGTATCATTATTATTATTTTCATTTTTTTTTCTAATTTGCTTTTACCTCCCGTGAATATATGCTAATTATTGTTAAGTTATATTTACTTTGGCTTTTTCGAGCTTCGTAGTTCTCCATTGCCTTGCCACTTGTTCTCGATGGTGCCCTCACTGGTAGTCTCCGTTTCAGAAAAAGTGGCATCGGCTTGAGAGTGGTTGCCTCTAACTTATCTATGGAAAGGTTGCTTGGCTTGAGAGTGGTTGCCTCTAACTTATCTATGGAAAGGTTGCTTAAAGTGCATATACACAGAGGCAAAGAGAGAGAATTAATGTACACAGG

mRNA sequence

GATGGATGAAGAACACATCCCCAATGGCTTCGCAAAATCACAAATCTGATTGCCCTAACTTCAGCAAAAATCAGTTGAACAGAGCGATTTCGATGTAGAAGGAGACAACACCAGGTGTTTCCAATGCCAATAATTTAGGGCAAAATAGCGATTATTAAAGGAGCAATGAAAATTGAAGAAGAGGAGAAAGAAAGAAGCATTTGCCCTAAGTTTCAGATTCATTCCAAATCAAAGTTAAGTGCAGAAAATGGCGGACAGTGGCGTAAGCTCAGCCGAATGCGAGAGGATTTTCAAGCGATTCGATGCTAATGGCGACGGGAAGATCTCGGCGACGGAGCTGGGCGATGCTTTGAACGGATTTGGAGTGAACGCTGAGGACGCCAAGAGGATGATGGACGCCATTGATAAAGATGGCGATGGCTGCATTTCCTTTGAAGAGTTCGCCGATTTTGCTAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAGGCGTTTTAGTTCTCCATTGCCTTGCCACTTGTTCTCGATGGTGCCCTCACTGGTAGTCTCCGTTTCAGAAAAAGTGGCATCGGCTTGAGAGTGGTTGCCTCTAACTTATCTATGGAAAGGTTGCTTGGCTTGAGAGTGGTTGCCTCTAACTTATCTATGGAAAGGTTGCTTAAAGTGCATATACACAGAGGCAAAGAGAGAGAATTAATGTACACAGG

Coding sequence (CDS)

ATGGCGGACAGTGGCGTAAGCTCAGCCGAATGCGAGAGGATTTTCAAGCGATTCGATGCTAATGGCGACGGGAAGATCTCGGCGACGGAGCTGGGCGATGCTTTGAACGGATTTGGAGTGAACGCTGAGGACGCCAAGAGGATGATGGACGCCATTGATAAAGATGGCGATGGCTGCATTTCCTTTGAAGAGTTCGCCGATTTTGCTAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAGGCGTTTTAG

Protein sequence

MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

Homology

[Close]

BLAST of Lsi05G003120 vs. Swiss-Prot
Match: CML28_ARATH (Probable calcium-binding protein CML28 OS=Arabidopsis thaliana GN=CML28 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 56/84 (66.67%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+    AE +RIFK+FDANGDGKISA ELGDAL   G V  ED KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          IS++EF DFA  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

[Close]

BLAST of Lsi05G003120 vs. Swiss-Prot
Match: POLC2_BRANA (Polcalcin Bra n 2 OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+    AE +RIFK+FDANGDGKISA+ELGDAL   G V  +D KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAEIDTDGDGY 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          IS++EF+DFA  NR LMKD AK F
Sbjct: 61 ISYQEFSDFASANRGLMKDVAKIF 83

[Close]

BLAST of Lsi05G003120 vs. Swiss-Prot
Match: POLC2_BRACM (Polcalcin Bra r 2 OS=Brassica campestris PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+    AE +RIFK+FDANGDGKISA+ELGDAL   G V  +D KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAEIDTDGDGY 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          IS++EF+DFA  NR LMKD AK F
Sbjct: 61 ISYQEFSDFASANRGLMKDVAKIF 83

[Close]

BLAST of Lsi05G003120 vs. Swiss-Prot
Match: CML29_ARATH (Probable calcium-binding protein CML29 OS=Arabidopsis thaliana GN=CML29 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-19
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+    AE +RIFK+FDANGDGKISA EL +AL   G V A+D KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGN 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          IS++EF DFA  NR LMKD AK F
Sbjct: 61 ISYQEFTDFAGANRGLMKDVAKIF 83

[Close]

BLAST of Lsi05G003120 vs. Swiss-Prot
Match: ALL3_OLEEU (Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-19
Identity = 53/84 (63.10%), Postives = 60/84 (71.43%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD     AE ERIFKRFDANGDGKIS++ELG+ L   G V  E+ +RMM  ID DGDG 
Sbjct: 1  MADDPQEVAEHERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGF 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          ISFEEF  FA+ NR L+KD AK F
Sbjct: 61 ISFEEFTVFARANRGLVKDVAKIF 84

[Close]

BLAST of Lsi05G003120 vs. TrEMBL
Match: A0A0A0L775_CUCSA (Putative calcium-binding protein CML28 OS=Cucumis sativus GN=Csa_3G345360 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.3e-33
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCI 60
          MADSGV+SA+ ERIFKRFDANGDGKISATELGDALN FGV++EDAKRMMDAIDKDGDG I
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFEEFADFAKDNRALMKDFAKAF 84
          SF+EF DFAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFDFAKDNRALMKDFAKAF 83

[Close]

BLAST of Lsi05G003120 vs. TrEMBL
Match: R0GAJ1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015861mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.0e-20
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+    AE +RIFKRFDANGDGKISA ELGDAL   G V  ED KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKRFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          IS+EEF+DFA  NR LMKD AK F
Sbjct: 61 ISYEEFSDFASANRGLMKDVAKIF 83

[Close]

BLAST of Lsi05G003120 vs. TrEMBL
Match: F6HKV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08830 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.0e-20
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+     E ERIFKRFD NGDGKIS+TELGDAL   G V+A++ +RMM  ID DGDG 
Sbjct: 1  MADNPQDQEERERIFKRFDTNGDGKISSTELGDALKTLGSVSADEVQRMMQEIDTDGDGF 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          ISF+EFADF + NR LMKD AK F
Sbjct: 61 ISFDEFADFHRANRGLMKDVAKVF 84

[Close]

BLAST of Lsi05G003120 vs. TrEMBL
Match: B9T2J7_RICCO (Dc3, putative OS=Ricinus communis GN=RCOM_0284980 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 56/84 (66.67%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          M D     AE ERIFKRFD NGDGKISATELGD L   G V  ++ KRMM  ID DGDG 
Sbjct: 1  MGDDAHDQAERERIFKRFDLNGDGKISATELGDCLKTLGSVTPDEIKRMMAEIDTDGDGF 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          ISF+EF DFAK NR LMKD AK F
Sbjct: 61 ISFDEFTDFAKANRGLMKDVAKIF 84

[Close]

BLAST of Lsi05G003120 vs. TrEMBL
Match: D7L0H4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_896345 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-19
Identity = 56/84 (66.67%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+    AE +RIFK+FDANGDGKISA ELGDAL   G V  ED KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          IS++EF+DFA  NR LMKD AK F
Sbjct: 61 ISYQEFSDFASANRGLMKDVAKIF 83

[Close]

BLAST of Lsi05G003120 vs. TAIR10
Match: AT3G03430.1 (AT3G03430.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 100.9 bits (250), Expect = 3.9e-22
Identity = 56/84 (66.67%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+    AE +RIFK+FDANGDGKISA ELGDAL   G V  ED KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          IS++EF DFA  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

[Close]

BLAST of Lsi05G003120 vs. TAIR10
Match: AT5G17480.1 (AT5G17480.1 pollen calcium-binding protein 1)

HSP 1 Score: 96.3 bits (238), Expect = 9.5e-21
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+    AE +RIFK+FDANGDGKISA EL +AL   G V A+D KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGN 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          IS++EF DFA  NR LMKD AK F
Sbjct: 61 ISYQEFTDFAGANRGLMKDVAKIF 83

[Close]

BLAST of Lsi05G003120 vs. TAIR10
Match: AT1G24620.1 (AT1G24620.1 EF hand calcium-binding protein family)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-09
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 10  ECERIFKRFDANGDGKISATELGDALNGFG--VNAEDAKRMMDAIDKDGDGCISFEEFAD 69
           E E +FK+FD NGDGKIS+ ELG  +   G  V  E+ ++ +  ID+ GDG I+FEEF +
Sbjct: 37  ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVE 96

Query: 70  F---AKDNRALMKDFAKAF 84
                 D   ++++   AF
Sbjct: 97  LNTKGMDQNDVLENLKDAF 115

[Close]

BLAST of Lsi05G003120 vs. TAIR10
Match: AT1G73630.1 (AT1G73630.1 EF hand calcium-binding protein family)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-09
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 10 ECERIFKRFDANGDGKISATELGDALNGFGVN--AEDAKRMMDAIDKDGDGCISFEEFAD 69
          E +++F +FDANGDGKIS +ELG+     G +   E+  R++D ID D DG I+ EEFA 
Sbjct: 20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFAT 79

Query: 70 FAKDNRALMK 78
            + + + ++
Sbjct: 80 ICRSSSSAVE 89

[Close]

BLAST of Lsi05G003120 vs. TAIR10
Match: AT2G43290.1 (AT2G43290.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 6   VSSAECERIFKRFDANGDGKISATELGDALNGFGVNA--EDAKRMMDAIDKDGDGCISFE 65
           +  +E +R+F+ FD NGDG+I+  EL D+L   G+    +D  +M+  ID +GDGC+  +
Sbjct: 61  IDPSELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDID 120

[Close]

BLAST of Lsi05G003120 vs. NCBI nr
Match: gi|659114464|ref|XP_008457063.1| (PREDICTED: polcalcin Bra n 2-like [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 4.9e-35
Identity = 76/83 (91.57%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCI 60
          MADSGV+SA+CERIFKRFDANGDGKISATELGDALNGFGV++EDAKRMMDAIDKDGDG I
Sbjct: 1  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFEEFADFAKDNRALMKDFAKAF 84
          SF+EF+DFAKDNRALMKDFAKAF
Sbjct: 61 SFQEFSDFAKDNRALMKDFAKAF 83

[Close]

BLAST of Lsi05G003120 vs. NCBI nr
Match: gi|449464146|ref|XP_004149790.1| (PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCI 60
          MADSGV+SA+ ERIFKRFDANGDGKISATELGDALN FGV++EDAKRMMDAIDKDGDG I
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFEEFADFAKDNRALMKDFAKAF 84
          SF+EF DFAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFDFAKDNRALMKDFAKAF 83

[Close]

BLAST of Lsi05G003120 vs. NCBI nr
Match: gi|565484066|ref|XP_006299673.1| (hypothetical protein CARUB_v10015861mg [Capsella rubella])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+    AE +RIFKRFDANGDGKISA ELGDAL   G V  ED KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKRFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          IS+EEF+DFA  NR LMKD AK F
Sbjct: 61 ISYEEFSDFASANRGLMKDVAKIF 83

[Close]

BLAST of Lsi05G003120 vs. NCBI nr
Match: gi|225441878|ref|XP_002284297.1| (PREDICTED: polcalcin Che a 3 [Vitis vinifera])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          MAD+     E ERIFKRFD NGDGKIS+TELGDAL   G V+A++ +RMM  ID DGDG 
Sbjct: 1  MADNPQDQEERERIFKRFDTNGDGKISSTELGDALKTLGSVSADEVQRMMQEIDTDGDGF 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          ISF+EFADF + NR LMKD AK F
Sbjct: 61 ISFDEFADFHRANRGLMKDVAKVF 84

[Close]

BLAST of Lsi05G003120 vs. NCBI nr
Match: gi|255583413|ref|XP_002532466.1| (PREDICTED: polcalcin Che a 3 [Ricinus communis])

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 56/84 (66.67%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 1  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGC 60
          M D     AE ERIFKRFD NGDGKISATELGD L   G V  ++ KRMM  ID DGDG 
Sbjct: 1  MGDDAHDQAERERIFKRFDLNGDGKISATELGDCLKTLGSVTPDEIKRMMAEIDTDGDGF 60

Query: 61 ISFEEFADFAKDNRALMKDFAKAF 84
          ISF+EF DFAK NR LMKD AK F
Sbjct: 61 ISFDEFTDFAKANRGLMKDVAKIF 84

The following BLAST results are available for this feature:

BLAST of Lsi05G003120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CML28_ARATH	6.9e-21	66.67	Probable calcium-binding protein CML28 OS=Arabidopsis thaliana GN=CML28 PE=3 SV=...	[more]
POLC2_BRANA	6.9e-21	65.48	Polcalcin Bra n 2 OS=Brassica napus PE=1 SV=1	[more]
POLC2_BRACM	6.9e-21	65.48	Polcalcin Bra r 2 OS=Brassica campestris PE=1 SV=1	[more]
CML29_ARATH	1.7e-19	64.29	Probable calcium-binding protein CML29 OS=Arabidopsis thaliana GN=CML29 PE=3 SV=...	[more]
ALL3_OLEEU	2.2e-19	63.10	Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV=1	[more]

BLAST of Lsi05G003120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L775_CUCSA	9.3e-33	89.16	Putative calcium-binding protein CML28 OS=Cucumis sativus GN=Csa_3G345360 PE=4 S...	[more]
R0GAJ1_9BRAS	9.0e-20	69.05	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015861mg PE=4 SV=1	[more]
F6HKV0_VITVI	9.0e-20	65.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08830 PE=4 SV=...	[more]
B9T2J7_RICCO	1.5e-19	66.67	Dc3, putative OS=Ricinus communis GN=RCOM_0284980 PE=4 SV=1	[more]
D7L0H4_ARALL	4.5e-19	66.67	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]

BLAST of Lsi05G003120 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03430.1	3.9e-22	66.67	Calcium-binding EF-hand family protein	[more]
AT5G17480.1	9.5e-21	64.29	pollen calcium-binding protein 1	[more]
AT1G24620.1	1.7e-09	40.51	EF hand calcium-binding protein family	[more]
AT1G73630.1	1.7e-09	41.43	EF hand calcium-binding protein family	[more]
AT2G43290.1	1.1e-08	40.32	Calcium-binding EF-hand family protein	[more]

BLAST of Lsi05G003120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114464\|ref\|XP_008457063.1\|	4.9e-35	91.57	PREDICTED: polcalcin Bra n 2-like [Cucumis melo]	[more]
gi\|449464146\|ref\|XP_004149790.1\|	1.3e-32	89.16	PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus]	[more]
gi\|565484066\|ref\|XP_006299673.1\|	1.3e-19	69.05	hypothetical protein CARUB_v10015861mg [Capsella rubella]	[more]
gi\|225441878\|ref\|XP_002284297.1\|	1.3e-19	65.48	PREDICTED: polcalcin Che a 3 [Vitis vinifera]	[more]
gi\|255583413\|ref\|XP_002532466.1\|	2.2e-19	66.67	PREDICTED: polcalcin Che a 3 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044464	cell part
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003120.1	Lsi05G003120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 11..69 score: 1.1
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 10..38 score: 2.8E-4coord: 44..72 score: 4.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 6..41 score: 15.434coord: 43..75 score: 13
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 8..76 score: 2.8
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 10..69 score: 3.32
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 19..31 score: -coord: 53..65 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 10..83 score: 2.0
None	No IPR available	PANTHER	PTHR10891:SF605	CALCIUM-BINDING PROTEIN CML25-RELATED	coord: 10..83 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003120	Csa3G345360	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003120	CSPI03G21770	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003120	Cucsa.012590	Cucumber (Gy14) v1	cgylsiB322
Lsi05G003120	CmaCh14G008490	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003120	CmaCh01G003590	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003120	CmoCh14G008630	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003120	CmoCh01G003750	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003120	Cla013179	Watermelon (97103) v1	lsiwmB361
Lsi05G003120	MELO3C020277	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003120	ClCG05G011030	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003120	MELO3C020277.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003120	Bhi01G001354	Wax gourd	lsiwgoB431
Lsi05G003120	Cp4.1LG02g16720	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003120	Cp4.1LG03g05820	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003120	CsGy3G020790	Cucumber (Gy14) v2	cgyblsiB192
Lsi05G003120	CsGy3G020960	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003120	Carg24222	Silver-seed gourd	carlsiB158
Lsi05G003120	Carg07447	Silver-seed gourd	carlsiB700
Lsi05G003120	CsaV3_3G021560	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003120	Watermelon (97103) v2	lsiwmbB329