CsGy3G020960 (gene) Cucumber (Gy14) v2

NameCsGy3G020960
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionCalcium-binding EF-hand family protein
LocationChr3 : 18711446 .. 18711697 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACAGTGGCGTAAACTCAGCCGATTTGGAGAGAATTTTCAAACGATTCGATGCCAATGGCGACGGCAAGATCTCGGCAACAGAGCTGGGAGATGCTTTGAACGAGTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGTGATGGCTACATTTCCTTCCAAGAATTCTTTGATTTCGCTAAGGATAATCGCGCTTTGATGAAGGATTTCGCCAAGGCGTTTTAG

mRNA sequence

ATGGCAGACAGTGGCGTAAACTCAGCCGATTTGGAGAGAATTTTCAAACGATTCGATGCCAATGGCGACGGCAAGATCTCGGCAACAGAGCTGGGAGATGCTTTGAACGAGTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGTGATGGCTACATTTCCTTCCAAGAATTCTTTGATTTCGCTAAGGATAATCGCGCTTTGATGAAGGATTTCGCCAAGGCGTTTTAG

Coding sequence (CDS)

ATGGCAGACAGTGGCGTAAACTCAGCCGATTTGGAGAGAATTTTCAAACGATTCGATGCCAATGGCGACGGCAAGATCTCGGCAACAGAGCTGGGAGATGCTTTGAACGAGTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGTGATGGCTACATTTCCTTCCAAGAATTCTTTGATTTCGCTAAGGATAATCGCGCTTTGATGAAGGATTTCGCCAAGGCGTTTTAG

Protein sequence

MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
BLAST of CsGy3G020960 vs. NCBI nr
Match: XP_004149790.1 (PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus] >KGN57835.1 putative calcium-binding protein CML28 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60
          MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXAKDNRALMKDFAKAF 84
          XXXXXXXXAKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXXAKDNRALMKDFAKAF 83

BLAST of CsGy3G020960 vs. NCBI nr
Match: XP_016902062.1 (PREDICTED: polcalcin Bra n 2-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60
          MADSGVNSAD ERIFKRFDANGDGKISATELGDALN XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXAKDNRALMKDFAKAF 84
          XXXXXXXXAKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXXAKDNRALMKDFAKAF 83

BLAST of CsGy3G020960 vs. NCBI nr
Match: XP_022948513.1 (probable calcium-binding protein CML28 [Cucurbita moschata] >XP_022998721.1 probable calcium-binding protein CML28 [Cucurbita maxima] >XP_023523664.1 probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60
          MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXAKDNRALMKDFAKAF 84
          XXXX    AKDNRALMKDFAKAF
Sbjct: 61 XXXXFFEFAKDNRALMKDFAKAF 83

BLAST of CsGy3G020960 vs. NCBI nr
Match: XP_022982739.1 (polcalcin Syr v 3-like [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1   MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60
           MA+S +++A+ ERIFKRFDANGDG ISA ELGDALN   XXXXXXXXXXXXXXXXXXXXX
Sbjct: 30  MAESDISAAECERIFKRFDANGDGMISAAELGDALNGLGXXXXXXXXXXXXXXXXXXXXX 89

Query: 61  XXXXXXXXAKDNRALMKDFAKAF 84
           XXXXXXX  K+NRALMKDFAKAF
Sbjct: 90  XXXXXXXFTKENRALMKDFAKAF 112

BLAST of CsGy3G020960 vs. NCBI nr
Match: XP_023526616.1 (probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60
          MA+S V++A+ ERIFKRFDANGDG ISA EL DALN   XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAESDVSAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXAKDNRALMKDFAKAF 84
          XXXXXXX AKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXFAKDNRALMKDFAKAF 83

BLAST of CsGy3G020960 vs. TAIR10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 53.1 bits (126), Expect = 9.3e-08
Identity = 36/84 (42.86%), Postives = 40/84 (47.62%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDAL-NXXXXXXXXXXXXXXXXXXXXXXX 60
          MAD+    A+ +RIFK+FDANGDGKISA ELGDAL N                       
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 XXXXXXXXXAKDNRALMKDFAKAF 84
                   A  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

BLAST of CsGy3G020960 vs. TAIR10
Match: AT5G17480.1 (pollen calcium-binding protein 1)

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-05
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDAL 36
          MAD+    A+ +RIFK+FDANGDGKISA EL +AL
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELEEAL 34

BLAST of CsGy3G020960 vs. Swiss-Prot
Match: sp|P69199|POLC2_BRACM (Polcalcin Bra r 2 OS=Brassica campestris OX=3711 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 51/84 (60.71%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDAL-NXXXXXXXXXXXXXXXXXXXXXXX 60
          MAD+    A+ +RIFK+FDANGDGKISA+ELGDAL N              XXXXXXXXX
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAXXXXXXXXX 60

Query: 61 XXXXXXXXXAKDNRALMKDFAKAF 84
          XXXXXX   A  NR LMKD AK F
Sbjct: 61 XXXXXXSDFASANRGLMKDVAKIF 83

BLAST of CsGy3G020960 vs. Swiss-Prot
Match: sp|P69198|POLC2_BRANA (Polcalcin Bra n 2 OS=Brassica napus OX=3708 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 51/84 (60.71%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDAL-NXXXXXXXXXXXXXXXXXXXXXXX 60
          MAD+    A+ +RIFK+FDANGDGKISA+ELGDAL N              XXXXXXXXX
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAXXXXXXXXX 60

Query: 61 XXXXXXXXXAKDNRALMKDFAKAF 84
          XXXXXX   A  NR LMKD AK F
Sbjct: 61 XXXXXXSDFASANRGLMKDVAKIF 83

BLAST of CsGy3G020960 vs. Swiss-Prot
Match: sp|Q9SRP7|CML28_ARATH (Probable calcium-binding protein CML28 OS=Arabidopsis thaliana OX=3702 GN=CML28 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06
Identity = 36/84 (42.86%), Postives = 40/84 (47.62%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDAL-NXXXXXXXXXXXXXXXXXXXXXXX 60
          MAD+    A+ +RIFK+FDANGDGKISA ELGDAL N                       
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 XXXXXXXXXAKDNRALMKDFAKAF 84
                   A  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

BLAST of CsGy3G020960 vs. Swiss-Prot
Match: sp|Q8VWY7|POLC2_TOBAC (Polcalcin Nic t 2 OS=Nicotiana tabacum OX=4097 GN=Nict2 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.9e-06
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0

Query: 2  ADSGVNSADLERIFKRFDANGDGKISATELGDAL 36
          AD   + AD ERIFKRFDANGDG+ISATELG+ L
Sbjct: 4  ADDPQDIADRERIFKRFDANGDGQISATELGETL 37

BLAST of CsGy3G020960 vs. Swiss-Prot
Match: sp|Q84V36|POLC3_CHEAL (Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.3e-06
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0

Query: 3  DSGVNSADLERIFKRFDANGDGKISATELGDAL 36
          D+  + AD ERIFKRFD NGDGKIS++ELGDAL
Sbjct: 5  DTPQDIADRERIFKRFDTNGDGKISSSELGDAL 37

BLAST of CsGy3G020960 vs. TrEMBL
Match: tr|A0A0A0L775|A0A0A0L775_CUCSA (Putative calcium-binding protein CML28 OS=Cucumis sativus OX=3659 GN=Csa_3G345360 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60
          MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXAKDNRALMKDFAKAF 84
          XXXXXXXXAKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXXAKDNRALMKDFAKAF 83

BLAST of CsGy3G020960 vs. TrEMBL
Match: tr|A0A1S4E1G1|A0A1S4E1G1_CUCME (polcalcin Bra n 2-like OS=Cucumis melo OX=3656 GN=LOC103496835 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-15
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60
          MADSGVNSAD ERIFKRFDANGDGKISATELGDALN XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXAKDNRALMKDFAKAF 84
          XXXXXXXXAKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXXAKDNRALMKDFAKAF 83

BLAST of CsGy3G020960 vs. TrEMBL
Match: tr|A0A2G9HP39|A0A2G9HP39_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08025 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-05
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDAL 36
          MAD   + AD ER+FKRFDANGDGKISATELGDAL
Sbjct: 1  MADDQQDVADWERLFKRFDANGDGKISATELGDAL 35

BLAST of CsGy3G020960 vs. TrEMBL
Match: tr|A0A2P5E779|A0A2P5E779_9ROSA (Parvalbumin OS=Trema orientalis OX=63057 GN=TorRG33x02_228240 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-05
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDAL 36
          MAD+  +  ++ERIFKRFD+NGDGKISATELGDAL
Sbjct: 1  MADAQRDKVEIERIFKRFDSNGDGKISATELGDAL 35

BLAST of CsGy3G020960 vs. TrEMBL
Match: tr|A0A2P4GR13|A0A2P4GR13_QUESU (Polcalcin bet v 4 OS=Quercus suber OX=58331 GN=CFP56_56695 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-05
Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDAL 36
          MAD   N AD ERIFKRFDANGDGKIS  ELG+AL
Sbjct: 1  MADEAQNKADCERIFKRFDANGDGKISLAELGNAL 35

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004149790.12.9e-15100.00PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus] >KGN57835.1 ... [more]
XP_016902062.11.1e-1497.59PREDICTED: polcalcin Bra n 2-like [Cucumis melo][more]
XP_022948513.17.9e-1386.75probable calcium-binding protein CML28 [Cucurbita moschata] >XP_022998721.1 prob... [more]
XP_022982739.11.1e-0981.93polcalcin Syr v 3-like [Cucurbita maxima][more]
XP_023526616.11.1e-0984.34probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT3G03430.19.3e-0842.86Calcium-binding EF-hand family protein[more]
AT5G17480.12.5e-0565.71pollen calcium-binding protein 1[more]
Match NameE-valueIdentityDescription
sp|P69199|POLC2_BRACM1.3e-0660.71Polcalcin Bra r 2 OS=Brassica campestris OX=3711 PE=1 SV=1[more]
sp|P69198|POLC2_BRANA1.3e-0660.71Polcalcin Bra n 2 OS=Brassica napus OX=3708 PE=1 SV=1[more]
sp|Q9SRP7|CML28_ARATH1.7e-0642.86Probable calcium-binding protein CML28 OS=Arabidopsis thaliana OX=3702 GN=CML28 ... [more]
sp|Q8VWY7|POLC2_TOBAC4.9e-0673.53Polcalcin Nic t 2 OS=Nicotiana tabacum OX=4097 GN=Nict2 PE=1 SV=1[more]
sp|Q84V36|POLC3_CHEAL8.3e-0672.73Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0L775|A0A0A0L775_CUCSA1.9e-15100.00Putative calcium-binding protein CML28 OS=Cucumis sativus OX=3659 GN=Csa_3G34536... [more]
tr|A0A1S4E1G1|A0A1S4E1G1_CUCME7.3e-1597.59polcalcin Bra n 2-like OS=Cucumis melo OX=3656 GN=LOC103496835 PE=4 SV=1[more]
tr|A0A2G9HP39|A0A2G9HP39_9LAMI1.8e-0580.00Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08025 P... [more]
tr|A0A2P5E779|A0A2P5E779_9ROSA4.0e-0574.29Parvalbumin OS=Trema orientalis OX=63057 GN=TorRG33x02_228240 PE=4 SV=1[more]
tr|A0A2P4GR13|A0A2P4GR13_QUESU4.0e-0577.14Polcalcin bet v 4 OS=Quercus suber OX=58331 GN=CFP56_56695 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G020960.1CsGy3G020960.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 44..72
e-value: 1.2E-4
score: 31.4
coord: 10..38
e-value: 9.6E-5
score: 31.8
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 10..69
e-value: 1.5E-12
score: 47.7
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 6..41
score: 15.434
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 43..75
score: 12.784
IPR002048EF-hand domainCDDcd00051EFhcoord: 10..65
e-value: 6.72444E-14
score: 59.8689
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 5..83
e-value: 1.1E-21
score: 78.5
NoneNo IPR availablePANTHERPTHR44833FAMILY NOT NAMEDcoord: 1..83
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 19..31
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 53..65
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 9..69