CmoCh01G003750 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G003750
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium binding protein
LocationCmo_Chr01 : 1832905 .. 1833156 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACAATGGCGTAGACTCAGCCGAGTGCGAGAGGATTTTCAAGCGATTCGATGCGAACGGCGACGGGCAGATCTCGGCGACGGAGCTCGGCGACGCATTGAACGGAATCGGAGTGAGCTCTGAAGATGCGAAGAGGATGATGGACGCCATTGATAAAGATGGCGACGGCTTCATTTCGTTCCAAGAATTCTTCGAGTTTGCCAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAAGCCTTTTAG

mRNA sequence

ATGGCAGACAATGGCGTAGACTCAGCCGAGTGCGAGAGGATTTTCAAGCGATTCGATGCGAACGGCGACGGGCAGATCTCGGCGACGGAGCTCGGCGACGCATTGAACGGAATCGGAGTGAGCTCTGAAGATGCGAAGAGGATGATGGACGCCATTGATAAAGATGGCGACGGCTTCATTTCGTTCCAAGAATTCTTCGAGTTTGCCAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAAGCCTTTTAG

Coding sequence (CDS)

ATGGCAGACAATGGCGTAGACTCAGCCGAGTGCGAGAGGATTTTCAAGCGATTCGATGCGAACGGCGACGGGCAGATCTCGGCGACGGAGCTCGGCGACGCATTGAACGGAATCGGAGTGAGCTCTGAAGATGCGAAGAGGATGATGGACGCCATTGATAAAGATGGCGACGGCTTCATTTCGTTCCAAGAATTCTTCGAGTTTGCCAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAAGCCTTTTAG
BLAST of CmoCh01G003750 vs. Swiss-Prot
Match: CML28_ARATH (Probable calcium-binding protein CML28 OS=Arabidopsis thaliana GN=CML28 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-21
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA ELGDAL  +G V+ ED KRMM  ID DGDG+
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

BLAST of CmoCh01G003750 vs. Swiss-Prot
Match: POLC2_TOBAC (Polcalcin Nic t 2 OS=Nicotiana tabacum GN=Nict2 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 1

Query: 2  ADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFI 61
          AD+  D A+ ERIFKRFDANGDGQISATELG+ L  +G V+ E+ K MMD ID + DGFI
Sbjct: 4  ADDPQDIADRERIFKRFDANGDGQISATELGETLQTLGSVTPEEVKYMMDEIDTNKDGFI 63

Query: 62 SFQEFFEFAKDNRALMKDFAKAF 84
          SFQEF EFA+ NR L++D AK F
Sbjct: 64 SFQEFIEFARANRGLIRDVAKIF 86

BLAST of CmoCh01G003750 vs. Swiss-Prot
Match: POLC2_BRANA (Polcalcin Bra n 2 OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA+ELGDAL  +G V+ +D KRMM  ID DGDG+
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFSDFASANRGLMKDVAKIF 83

BLAST of CmoCh01G003750 vs. Swiss-Prot
Match: POLC2_BRACM (Polcalcin Bra r 2 OS=Brassica campestris PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA+ELGDAL  +G V+ +D KRMM  ID DGDG+
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFSDFASANRGLMKDVAKIF 83

BLAST of CmoCh01G003750 vs. Swiss-Prot
Match: POLC4_BETPN (Polcalcin Bet v 4 OS=Betula pendula GN=BETV4 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-20
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1

Query: 3  DNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFIS 62
          D+  D AE ERIFKRFDANGDG+ISA ELG+AL  +G ++ ++ K MM  ID DGDGFIS
Sbjct: 4  DHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDGFIS 63

Query: 63 FQEFFEFAKDNRALMKDFAKAF 84
          FQEF +F + NR L+KD AK F
Sbjct: 64 FQEFTDFGRANRGLLKDVAKIF 85

BLAST of CmoCh01G003750 vs. TrEMBL
Match: A0A0A0L775_CUCSA (Putative calcium-binding protein CML28 OS=Cucumis sativus GN=Csa_3G345360 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-33
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFI 60
          MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+I
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFEFAKDNRALMKDFAKAF 84
          SFQEFF+FAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFDFAKDNRALMKDFAKAF 83

BLAST of CmoCh01G003750 vs. TrEMBL
Match: A0A164UEU9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025870 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-21
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1

Query: 7  DSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEF 66
          D+AE ERIFK+FDANGDGQIS+TELGDAL  +G V+ ++ KRMM  ID DGDG+ISFQEF
Sbjct: 5  DAAEHERIFKKFDANGDGQISSTELGDALQNLGNVTVDEVKRMMSEIDTDGDGYISFQEF 64

Query: 67 FEFAKDNRALMKDFAKAF 84
           EFAK N+ LMKD AK F
Sbjct: 65 TEFAKANKGLMKDVAKVF 82

BLAST of CmoCh01G003750 vs. TrEMBL
Match: I1MBX4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G216000 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MA++  D A+ ERIFKRFDANGDGQIS+ ELG+AL  +G V++E+ KRMM+ ID DGDG+
Sbjct: 1  MAEDPQDVADRERIFKRFDANGDGQISSAELGEALKALGSVTAEEVKRMMEEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF EFAK NR L+KD AK F
Sbjct: 61 ISYQEFTEFAKANRGLVKDVAKIF 84

BLAST of CmoCh01G003750 vs. TrEMBL
Match: A0A0B2S5H4_GLYSO (Polcalcin Nic t 1 OS=Glycine soja GN=glysoja_016839 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MA++  D A+ ERIFKRFDANGDGQIS+ ELG+AL  +G V++E+ KRMM+ ID DGDG+
Sbjct: 1  MAEDPQDVADRERIFKRFDANGDGQISSAELGEALKALGSVTAEEVKRMMEEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF EFAK NR L+KD AK F
Sbjct: 61 ISYQEFTEFAKANRGLVKDVAKIF 84

BLAST of CmoCh01G003750 vs. TrEMBL
Match: F6HKV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08830 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-20
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MADN  D  E ERIFKRFD NGDG+IS+TELGDAL  +G VS+++ +RMM  ID DGDGF
Sbjct: 1  MADNPQDQEERERIFKRFDTNGDGKISSTELGDALKTLGSVSADEVQRMMQEIDTDGDGF 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          ISF EF +F + NR LMKD AK F
Sbjct: 61 ISFDEFADFHRANRGLMKDVAKVF 84

BLAST of CmoCh01G003750 vs. TAIR10
Match: AT3G03430.1 (AT3G03430.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-22
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA ELGDAL  +G V+ ED KRMM  ID DGDG+
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

BLAST of CmoCh01G003750 vs. TAIR10
Match: AT5G17480.1 (AT5G17480.1 pollen calcium-binding protein 1)

HSP 1 Score: 93.2 bits (230), Expect = 8.1e-20
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA EL +AL  +G V+++D KRMM  ID DGDG 
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGN 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFTDFAGANRGLMKDVAKIF 83

BLAST of CmoCh01G003750 vs. TAIR10
Match: AT1G24620.1 (AT1G24620.1 EF hand calcium-binding protein family)

HSP 1 Score: 60.1 bits (144), Expect = 7.6e-10
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1

Query: 10  ECERIFKRFDANGDGQISATELGDALNGIG--VSSEDAKRMMDAIDKDGDGFISFQEFFE 69
           E E +FK+FD NGDG+IS+ ELG  +  +G  V  E+ ++ +  ID+ GDG+I+F+EF E
Sbjct: 37  ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVE 96

Query: 70  F---AKDNRALMKDFAKAF 84
                 D   ++++   AF
Sbjct: 97  LNTKGMDQNDVLENLKDAF 115

BLAST of CmoCh01G003750 vs. TAIR10
Match: AT3G07490.1 (AT3G07490.1 ARF-GAP domain 11)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-09
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 1

Query: 6  VDSAECERIFKRFDANGDGQISATELGDALNGIG--VSSEDAKRMMDAIDKDGDGFISFQ 65
          +D AE  RIF+ FD NGDG+I+  EL D+L  +G  +  +D  +M++ ID +GDG++  +
Sbjct: 1  MDQAELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIE 60

Query: 66 EF---FEFAKDNRALMKDFAKAF 84
          EF   ++   + R   +D  +AF
Sbjct: 61 EFGGLYQTIMEERDEEEDMREAF 83

BLAST of CmoCh01G003750 vs. TAIR10
Match: AT1G73630.1 (AT1G73630.1 EF hand calcium-binding protein family)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-09
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1

Query: 10 ECERIFKRFDANGDGQISATELGDALNGIGVS--SEDAKRMMDAIDKDGDGFISFQEFFE 69
          E +++F +FDANGDG+IS +ELG+    +G S   E+  R++D ID D DGFI+ +EF  
Sbjct: 20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFAT 79

Query: 70 FAKDNRALMK 78
            + + + ++
Sbjct: 80 ICRSSSSAVE 89

BLAST of CmoCh01G003750 vs. NCBI nr
Match: gi|659114464|ref|XP_008457063.1| (PREDICTED: polcalcin Bra n 2-like [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 3.2e-34
Identity = 75/83 (90.36%), Postives = 81/83 (97.59%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFI 60
          MAD+GV+SA+CERIFKRFDANGDG+ISATELGDALNG GVSSEDAKRMMDAIDKDGDG+I
Sbjct: 1  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFEFAKDNRALMKDFAKAF 84
          SFQEF +FAKDNRALMKDFAKAF
Sbjct: 61 SFQEFSDFAKDNRALMKDFAKAF 83

BLAST of CmoCh01G003750 vs. NCBI nr
Match: gi|449464146|ref|XP_004149790.1| (PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFI 60
          MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+I
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFEFAKDNRALMKDFAKAF 84
          SFQEFF+FAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFDFAKDNRALMKDFAKAF 83

BLAST of CmoCh01G003750 vs. NCBI nr
Match: gi|1021031010|gb|KZM88795.1| (hypothetical protein DCAR_025870 [Daucus carota subsp. sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1

Query: 7  DSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEF 66
          D+AE ERIFK+FDANGDGQIS+TELGDAL  +G V+ ++ KRMM  ID DGDG+ISFQEF
Sbjct: 5  DAAEHERIFKKFDANGDGQISSTELGDALQNLGNVTVDEVKRMMSEIDTDGDGYISFQEF 64

Query: 67 FEFAKDNRALMKDFAKAF 84
           EFAK N+ LMKD AK F
Sbjct: 65 TEFAKANKGLMKDVAKVF 82

BLAST of CmoCh01G003750 vs. NCBI nr
Match: gi|356553301|ref|XP_003544995.1| (PREDICTED: polcalcin Nic t 1 [Glycine max])

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MA++  D A+ ERIFKRFDANGDGQIS+ ELG+AL  +G V++E+ KRMM+ ID DGDG+
Sbjct: 1  MAEDPQDVADRERIFKRFDANGDGQISSAELGEALKALGSVTAEEVKRMMEEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF EFAK NR L+KD AK F
Sbjct: 61 ISYQEFTEFAKANRGLVKDVAKIF 84

BLAST of CmoCh01G003750 vs. NCBI nr
Match: gi|225441878|ref|XP_002284297.1| (PREDICTED: polcalcin Che a 3 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-20
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1

Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MADN  D  E ERIFKRFD NGDG+IS+TELGDAL  +G VS+++ +RMM  ID DGDGF
Sbjct: 1  MADNPQDQEERERIFKRFDTNGDGKISSTELGDALKTLGSVSADEVQRMMQEIDTDGDGF 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          ISF EF +F + NR LMKD AK F
Sbjct: 61 ISFDEFADFHRANRGLMKDVAKVF 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CML28_ARATH2.4e-2165.48Probable calcium-binding protein CML28 OS=Arabidopsis thaliana GN=CML28 PE=3 SV=... [more]
POLC2_TOBAC6.9e-2165.06Polcalcin Nic t 2 OS=Nicotiana tabacum GN=Nict2 PE=1 SV=1[more]
POLC2_BRANA6.9e-2164.29Polcalcin Bra n 2 OS=Brassica napus PE=1 SV=1[more]
POLC2_BRACM6.9e-2164.29Polcalcin Bra r 2 OS=Brassica campestris PE=1 SV=1[more]
POLC4_BETPN3.4e-2062.20Polcalcin Bet v 4 OS=Betula pendula GN=BETV4 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L775_CUCSA3.2e-3389.16Putative calcium-binding protein CML28 OS=Cucumis sativus GN=Csa_3G345360 PE=4 S... [more]
A0A164UEU9_DAUCA8.2e-2170.51Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025870 PE=4 SV=1[more]
I1MBX4_SOYBN1.1e-2065.48Uncharacterized protein OS=Glycine max GN=GLYMA_14G216000 PE=4 SV=1[more]
A0A0B2S5H4_GLYSO1.1e-2065.48Polcalcin Nic t 1 OS=Glycine soja GN=glysoja_016839 PE=4 SV=1[more]
F6HKV0_VITVI3.1e-2065.48Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08830 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G03430.11.3e-2265.48 Calcium-binding EF-hand family protein[more]
AT5G17480.18.1e-2061.90 pollen calcium-binding protein 1[more]
AT1G24620.17.6e-1039.24 EF hand calcium-binding protein family[more]
AT3G07490.11.7e-0937.35 ARF-GAP domain 11[more]
AT1G73630.12.2e-0940.00 EF hand calcium-binding protein family[more]
Match NameE-valueIdentityDescription
gi|659114464|ref|XP_008457063.1|3.2e-3490.36PREDICTED: polcalcin Bra n 2-like [Cucumis melo][more]
gi|449464146|ref|XP_004149790.1|4.6e-3389.16PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus][more]
gi|1021031010|gb|KZM88795.1|1.2e-2070.51hypothetical protein DCAR_025870 [Daucus carota subsp. sativus][more]
gi|356553301|ref|XP_003544995.1|1.5e-2065.48PREDICTED: polcalcin Nic t 1 [Glycine max][more]
gi|225441878|ref|XP_002284297.1|4.5e-2065.48PREDICTED: polcalcin Che a 3 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0044464 cell part
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G003750.1CmoCh01G003750.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 11..69
score: 9.6
IPR002048EF-hand domainSMARTSM00054efh_1coord: 10..38
score: 2.1E-4coord: 44..72
score: 3.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 43..75
score: 12.728coord: 6..41
score: 14
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 8..76
score: 5.9
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 8..69
score: 8.9
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 53..65
score: -coord: 19..31
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 10..83
score: 1.8
NoneNo IPR availablePANTHERPTHR10891:SF605CALCIUM-BINDING PROTEIN CML25-RELATEDcoord: 10..83
score: 1.8